| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodopseudomonas palustris CGA009 | 1.0 | TX73_010150 | | tRNA dihydrouridine(20/20a) synthase DusA | 1.0 | TX73_004390 | | response regulator transcription factor | 0.46 | 17 |
| Bosea sp. OAE506 | 0.62 | ABIE41_RS21285 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.63 | ABIE41_RS24085 | | response regulator transcription factor | — | — |
| Azospirillum brasilense Sp245 | 0.58 | AZOBR_RS15935 | | tRNA-dihydrouridine synthase A | 0.41 | AZOBR_RS12735 | | transcriptional regulator | low | > 97 |
| Azospirillum sp. SherDot2 | 0.58 | MPMX19_00670 | | tRNA-dihydrouridine(20/20a) synthase | 0.46 | MPMX19_06084 | | Transcriptional regulatory protein LnrK | low | > 112 |
| Shewanella amazonensis SB2B | 0.57 | Sama_3055 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.51 | Sama_2076 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.57 | A4249_RS10515 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.36 | A4249_RS15200 | | response regulator transcription factor | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.57 | CSW01_01985 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.44 | CSW01_13640 | | DNA-binding response regulator | low | > 62 |
| Shewanella loihica PV-4 | 0.56 | Shew_0536 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.50 | Shew_1545 | | two component LuxR family transcriptional regulator (RefSeq) | — | — |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_0718 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.50 | Shewana3_1732 | | two component LuxR family transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.56 | SO3912 | | TIM-barrel protein, yjbN family (NCBI ptt file) | 0.49 | SO2648 | | DNA-binding response regulator, LuxR family (NCBI ptt file) | low | > 76 |
| Serratia liquefaciens MT49 | 0.55 | IAI46_22970 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.22 | IAI46_19165 | | response regulator transcription factor | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.55 | ABZR86_RS18350 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | ABZR86_RS15195 | | response regulator transcription factor | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.55 | OKGIIK_00625 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.44 | OKGIIK_15195 | | LuxR family transcriptional regulator | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.55 | LRK54_RS05995 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.45 | LRK54_RS08425 | | response regulator transcription factor | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.55 | LRK55_RS05750 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.45 | LRK55_RS08190 | | response regulator transcription factor | 0.83 | 25 |
| Rhizobium sp. OAE497 | 0.55 | ABIE40_RS10895 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.52 | ABIE40_RS02405 | | response regulator transcription factor | low | > 107 |
| Agrobacterium fabrum C58 | 0.54 | Atu1515 | | hypothetical protein | 0.52 | Atu0484 | | two component response regulator | low | > 89 |
| Enterobacter sp. TBS_079 | 0.54 | MPMX20_00265 | | tRNA-dihydrouridine(20/20a) synthase | 0.21 | MPMX20_01186 | | Transcriptional activator protein ExaE | low | > 85 |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_4263 | | tRNA dihydrouridine synthase A | 0.18 | EX28DRAFT_2442 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.53 | QEN71_RS22650 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.24 | QEN71_RS07810 | | response regulator transcription factor | low | > 153 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS03925 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.47 | ABIE51_RS01665 | | response regulator transcription factor | — | — |
| Herbaspirillum seropedicae SmR1 | 0.52 | HSERO_RS17905 | | tRNA-dihydrouridine synthase A | 0.26 | HSERO_RS06185 | | response regulator protein | low | > 78 |
| Alteromonas macleodii MIT1002 | 0.51 | MIT1002_03387 | | putative tRNA-dihydrouridine synthase | 0.41 | MIT1002_02224 | | Protease production enhancer protein | low | > 70 |
| Marinobacter adhaerens HP15 | 0.51 | HP15_2240 | | tRNA-dihydrouridine synthase, TIM-barrel, YjbN | 0.51 | HP15_812 | | two component transcriptional regulator, LuxR family | — | — |
| Pseudomonas putida KT2440 | 0.51 | PP_2169 | | tRNA-dihydrouridine synthase A | 0.48 | PP_1635 | | DNA-binding response regulator | low | > 96 |
| Burkholderia phytofirmans PsJN | 0.51 | BPHYT_RS08700 | | tRNA-dihydrouridine synthase A | 0.23 | BPHYT_RS24080 | | LuxR family transcriptional regulator | — | — |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS06510 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.22 | RS_RS12325 | | DNA-binding response regulator | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.50 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | 0.46 | Psyr_1384 | | regulatory protein, LuxR:Response regulator receiver | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.50 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | 0.46 | Psyr_1384 | | regulatory protein, LuxR:Response regulator receiver | — | — |
| Rhodospirillum rubrum S1H | 0.50 | Rru_A1621 | | Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) | 0.29 | Rru_A3229 | | Two Component Transcriptional Regulator, LuxR family (NCBI) | low | > 58 |
| Acinetobacter radioresistens SK82 | 0.50 | MPMX26_00482 | | tRNA-dihydrouridine(20/20a) synthase | 0.50 | MPMX26_02902 | | Transcriptional activator protein ExaE | low | > 36 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.50 | H281DRAFT_00766 | | tRNA-U16,U17-dihydrouridine synthase | 0.25 | H281DRAFT_05306 | | two component transcriptional regulator, LuxR family | low | > 103 |
| Ralstonia solanacearum UW163 | 0.49 | UW163_RS13175 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.22 | UW163_RS08905 | | DNA-binding response regulator | — | — |
| Phaeobacter inhibens DSM 17395 | 0.49 | PGA1_c19230 | | tRNA-dihydrouridine synthase A | 0.33 | PGA1_c22610 | | putative transcriptional regulator, containing response regulator domain | low | > 62 |
| Ralstonia solanacearum IBSBF1503 | 0.49 | RALBFv3_RS15730 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.22 | RALBFv3_RS04765 | | DNA-binding response regulator | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.49 | RR42_RS12665 | | tRNA-dihydrouridine synthase A | 0.29 | RR42_RS27790 | | LuxR family transcriptional regulator | low | > 128 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.48 | PFLU_RS05910 | | response regulator transcription factor | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.48 | PFLU_RS05910 | | response regulator transcription factor | — | — |
| Ralstonia solanacearum PSI07 | 0.49 | RPSI07_RS17630 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.22 | RPSI07_RS12620 | | DNA-binding response regulator | low | > 81 |
| Dinoroseobacter shibae DFL-12 | 0.49 | Dshi_2512 | | TIM-barrel protein, yjbN family (RefSeq) | 0.31 | Dshi_0465 | | two component transcriptional regulator, LuxR family (RefSeq) | low | > 64 |
| Paraburkholderia graminis OAS925 | 0.49 | ABIE53_001975 | | tRNA-dihydrouridine synthase A | 0.26 | ABIE53_006519 | | DNA-binding NarL/FixJ family response regulator | low | > 113 |
| Pseudomonas simiae WCS417 | 0.49 | PS417_07740 | | tRNA-dihydrouridine synthase A | 0.48 | PS417_05840 | | LuxR family transcriptional regulator | low | > 88 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS13915 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | ABID97_RS05205 | | response regulator transcription factor | 0.40 | 48 |
| Pseudomonas stutzeri RCH2 | 0.49 | Psest_2706 | | tRNA dihydrouridine synthase A | 0.48 | Psest_2864 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | low | > 67 |
| Pseudomonas fluorescens FW300-N1B4 | 0.48 | Pf1N1B4_57 | | tRNA dihydrouridine synthase A | 0.46 | Pf1N1B4_3150 | | Transcriptional regulator, LuxR family | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_2257 | | tRNA dihydrouridine synthase A | 0.46 | Pf6N2E2_2986 | | Transcriptional regulator, LuxR family | low | > 103 |
| Pseudomonas sp. S08-1 | 0.48 | OH686_22745 | | tRNA-dihydrouridine(20/20a) synthase | 0.48 | OH686_18240 | | Two-component transcriptional response regulator, LuxR family | low | > 80 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.48 | GFF4791 | | tRNA dihydrouridine synthase A | 0.24 | GFF2850 | | Proline sensor-regulator PrlR | — | — |
| Acidovorax sp. GW101-3H11 | 0.48 | Ac3H11_2288 | | tRNA dihydrouridine synthase A | 0.41 | Ac3H11_716 | | Transcriptional regulator, LuxR family | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_02170 | | tRNA-dihydrouridine synthase A | 0.46 | AO356_05640 | | LuxR family transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_00295 | | tRNA-dihydrouridine synthase A | 0.48 | AO353_16835 | | LuxR family transcriptional regulator | low | > 101 |
| Variovorax sp. SCN45 | 0.47 | GFF928 | | tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) | 0.24 | GFF2712 | | no description | low | > 127 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_01143 | | tRNA-dihydrouridine(20/20a) synthase | 0.46 | PFR28_00478 | | Transcriptional regulatory protein DegU | low | > 88 |
| Sinorhizobium meliloti 1021 | 0.46 | SMc04235 | | tRNA-dihydrouridine synthase A | 0.52 | SMc02248 | | transcriptional regulator | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_3987 | | tRNA dihydrouridine synthase A | 0.46 | PfGW456L13_4662 | | Transcriptional regulator, LuxR family | low | > 87 |
Not shown: 29 genomes with orthologs for TX73_010150 only; 2 genomes with orthologs for TX73_004390 only