| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sinorhizobium meliloti 1021 | 1.0 | SMc00770 | | putrescine-binding periplasmic protein | 1.0 | SMc01124 | | PII uridylyl-transferase | 0.46 | 4 |
| Rhizobium sp. OAE497 | 0.77 | ABIE40_RS03265 | | polyamine ABC transporter substrate-binding protein | 0.74 | ABIE40_RS01765 | | [protein-PII] uridylyltransferase | low | > 107 |
| Rhodopseudomonas palustris CGA009 | 0.61 | TX73_010380 | | polyamine ABC transporter substrate-binding protein | 0.53 | TX73_003060 | | [protein-PII] uridylyltransferase | low | > 86 |
| Agrobacterium fabrum C58 | 0.61 | Atu0609 | | ABC transporter, substrate binding protein (putrescine) | 0.72 | Atu0346 | | uridylyltransferase/uridylyl-removing enzyme UTase | low | > 89 |
| Pseudomonas stutzeri RCH2 | 0.56 | Psest_4284 | | Spermidine/putrescine-binding periplasmic protein | 0.23 | Psest_2845 | | [Protein-PII] uridylyltransferase | 0.29 | 20 |
| Phaeobacter inhibens DSM 17395 | 0.55 | PGA1_c34420 | | putrescine-binding periplasmic protein PotF | 0.36 | PGA1_c26750 | | uridylyltransferase GlnD | — | — |
| Shewanella amazonensis SB2B | 0.54 | Sama_2642 | | polyamine ABC transporter, periplasmic polyamine-binding protein (RefSeq) | 0.18 | Sama_1137 | | PII uridylyl-transferase (RefSeq) | low | > 62 |
| Pseudomonas fluorescens GW456-L13 | 0.54 | PfGW456L13_929 | | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | 0.22 | PfGW456L13_4711 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.54 | Pf6N2E2_4514 | | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | 0.22 | Pf6N2E2_3072 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | low | > 103 |
| Rahnella sp. WP5 | 0.54 | EX31_RS09630 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | EX31_RS13045 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 89 |
| Pseudomonas fluorescens FW300-N1B4 | 0.53 | Pf1N1B4_2260 | | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | 0.22 | Pf1N1B4_3081 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | low | > 87 |
| Bosea sp. OAE506 | 0.53 | ABIE41_RS21650 | | polyamine ABC transporter substrate-binding protein | 0.50 | ABIE41_RS00205 | | [protein-PII] uridylyltransferase | low | > 77 |
| Pseudomonas sp. RS175 | 0.53 | PFR28_04294 | | Spermidine-binding periplasmic protein SpuE | 0.21 | PFR28_00394 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | low | > 88 |
| Pseudomonas sp. S08-1 | 0.53 | OH686_11465 | | Putrescine ABC transporter putrescine-binding protein PotF | 0.23 | OH686_06495 | | protein-P-II uridylyltransferase | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.53 | AO356_13160 | | putrescine ABC transporter, substrate-binding component (from data) | 0.22 | AO356_06050 | | protein-PII uridylyltransferase | low | > 104 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.53 | Psyr_4864 | | extracellular solute-binding protein, family 1 | 0.21 | Psyr_1341 | | Protein-P-II uridylyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.53 | Psyr_4864 | | extracellular solute-binding protein, family 1 | 0.21 | Psyr_1341 | | Protein-P-II uridylyltransferase | low | > 86 |
| Dickeya dadantii 3937 | 0.53 | DDA3937_RS09460 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | DDA3937_RS05105 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 74 |
| Pseudomonas putida KT2440 | 0.53 | PP_5180 | | spermidine/putrescine ABC transporter - periplasmic subunit | 0.23 | PP_1589 | | uridylyltransferase | low | > 96 |
| Shewanella sp. ANA-3 | 0.53 | Shewana3_3097 | | extracellular solute-binding protein (RefSeq) | 0.18 | Shewana3_2817 | | PII uridylyl-transferase (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.53 | SO1270 | | polyamine ABC transporter, periplasmic polyamine-binding protein (NCBI ptt file) | 0.18 | SO1626 | glnD | protein-P-II uridylyltransferase (NCBI ptt file) | 0.50 | 45 |
| Pectobacterium carotovorum WPP14 | 0.52 | HER17_RS12500 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | HER17_RS16345 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 75 |
| Dickeya dianthicola ME23 | 0.52 | DZA65_RS09790 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | DZA65_RS05445 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 75 |
| Pseudomonas simiae WCS417 | 0.52 | PS417_27120 | | ABC transporter substrate-binding protein | 0.22 | PS417_06200 | | protein-PII uridylyltransferase | low | > 88 |
| Enterobacter sp. TBS_079 | 0.52 | MPMX20_01495 | | Putrescine-binding periplasmic protein | 0.20 | MPMX20_00851 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | — | — |
| Enterobacter asburiae PDN3 | 0.52 | EX28DRAFT_2099 | | Spermidine/putrescine-binding periplasmic protein | 0.20 | EX28DRAFT_3754 | | UTP--GlnB (protein PII) uridylyltransferase, GlnD | low | > 76 |
| Dickeya dianthicola 67-19 | 0.52 | HGI48_RS09480 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | HGI48_RS05105 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 71 |
| Klebsiella michiganensis M5al | 0.52 | BWI76_RS09460 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.19 | BWI76_RS05200 | | bifunctional uridylyltransferase/uridylyl-removing protein | low | > 92 |
| Pseudomonas fluorescens SBW25 | 0.52 | PFLU_RS28770 | | polyamine ABC transporter substrate-binding protein | 0.22 | PFLU_RS06265 | | [protein-PII] uridylyltransferase | low | > 109 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.52 | Xcc-8004.2206.1 | | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | 0.17 | Xcc-8004.3543.1 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.52 | PFLU_RS28770 | | polyamine ABC transporter substrate-binding protein | 0.22 | PFLU_RS06265 | | [protein-PII] uridylyltransferase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.52 | AO353_08575 | | ABC transporter substrate-binding protein | 0.22 | AO353_16450 | | protein-PII uridylyltransferase | low | > 101 |
| Pantoea sp. MT58 | 0.51 | IAI47_13045 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | IAI47_15540 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 76 |
| Escherichia coli BW25113 | 0.51 | b0854 | potF | putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | 0.20 | b0167 | glnD | PII uridylyl-transferase (NCBI) | low | > 76 |
| Rhodospirillum rubrum S1H | 0.51 | Rru_A1018 | | extracellular solute-binding protein, family 1 (NCBI) | 0.42 | Rru_A3539 | | GlnB (protein PII) uridylyltransferase, GlnD (NCBI) | low | > 58 |
| Escherichia coli BL21 | 0.50 | ECD_00859 | | putrescine ABC transporter periplasmic binding protein | 0.20 | ECD_00165 | | uridylyltransferase | low | > 60 |
| Escherichia fergusonii Becca | 0.50 | EFB2_03207 | | Putrescine-binding periplasmic protein | 0.20 | EFB2_03878 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.50 | OHPLBJKB_02814 | | Putrescine-binding periplasmic protein | 0.20 | OHPLBJKB_03497 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | low | > 73 |
| Escherichia coli Nissle 1917 | 0.50 | ECOLIN_RS04550 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | ECOLIN_RS00915 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECOR38 | 0.50 | HEPCGN_02070 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | HEPCGN_08185 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECRC101 | 0.50 | MCAODC_25175 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | MCAODC_00750 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECOR27 | 0.50 | NOLOHH_22330 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | NOLOHH_02580 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECRC102 | 0.50 | NIAGMN_04005 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | NIAGMN_08085 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECRC98 | 0.50 | JDDGAC_09595 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | JDDGAC_13830 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECRC62 | 0.50 | BNILDI_20585 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | BNILDI_09090 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECRC101 | 0.50 | OKFHMN_05960 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | OKFHMN_10235 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECRC99 | 0.50 | KEDOAH_21950 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | KEDOAH_17920 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.50 | GFF758 | | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | 0.19 | GFF55 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | low | > 78 |
| Shewanella loihica PV-4 | 0.50 | Shew_0973 | | extracellular solute-binding protein (RefSeq) | 0.20 | Shew_2637 | | PII uridylyl-transferase (RefSeq) | low | > 60 |
| Serratia liquefaciens MT49 | 0.50 | IAI46_08370 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.20 | IAI46_20270 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 86 |
| Marinobacter adhaerens HP15 | 0.49 | HP15_940 | | putrescine ABC transporter, periplasmic putrescine-binding protein | 0.20 | HP15_1163 | | [protein-PII] uridylyltransferase | low | > 73 |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS26645 | | ABC transporter substrate-binding protein | 0.22 | BPHYT_RS12150 | | PII uridylyl-transferase | low | > 109 |
| Castellaniella sp019104865 MT123 | 0.46 | ABCV34_RS02360 | | polyamine ABC transporter substrate-binding protein | 0.20 | ABCV34_RS04120 | | [protein-PII] uridylyltransferase | low | > 48 |
| Magnetospirillum magneticum AMB-1 | 0.46 | AMB_RS13210 | | polyamine ABC transporter substrate-binding protein | 0.41 | AMB_RS22650 | | [protein-PII] uridylyltransferase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.45 | QEN71_RS07120 | | polyamine ABC transporter substrate-binding protein | 0.21 | QEN71_RS06410 | | [protein-PII] uridylyltransferase | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_05180 | | putrescine transport system substrate-binding protein | 0.22 | H281DRAFT_00608 | | UTP--GlnB (protein PII) uridylyltransferase, GlnD | 0.34 | 14 |
| Azospirillum brasilense Sp245 | 0.39 | AZOBR_RS08845 | | ABC transporter substrate-binding protein | 0.41 | AZOBR_RS02110 | | protein-PII uridylyltransferase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.37 | MPMX19_04883 | | Spermidine-binding periplasmic protein SpuE | 0.41 | MPMX19_00912 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | low | > 112 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF2035 | | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | 0.19 | GFF4563 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | low | > 90 |
| Desulfovibrio vulgaris Miyazaki F | 0.26 | DvMF_1957 | | extracellular solute-binding protein family 1 (RefSeq) | 0.13 | DvMF_0864 | | UTP-GlnB uridylyltransferase, GlnD (RefSeq) | low | > 51 |
| Vibrio cholerae E7946 ATCC 55056 | 0.26 | CSW01_07140 | | spermidine/putrescine ABC transporter substrate-binding protein | 0.20 | CSW01_11520 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 62 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.25 | DVU0095 | potD-1 | polyamine ABC transporter, periplasmic polyamine-binding protein (TIGR) | 0.15 | DVU1233 | glnD | protein-P-II uridylyltransferase, putative (TIGR) | low | > 55 |
| Caulobacter crescentus NA1000 Δfur | 0.22 | CCNA_03239 | | spermidine/putrescine-binding protein | 0.37 | CCNA_00013 | | protein-PII uridylyltransferase | — | — |
| Caulobacter crescentus NA1000 | 0.22 | CCNA_03239 | | spermidine/putrescine-binding protein | 0.37 | CCNA_00013 | | protein-PII uridylyltransferase | low | > 66 |
| Acidovorax sp. GW101-3H11 | 0.12 | Ac3H11_189 | | ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) | 0.19 | Ac3H11_537 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.08 | Dshi_2123 | | extracellular solute-binding protein family 1 (RefSeq) | 0.38 | Dshi_2833 | | UTP-GlnB uridylyltransferase, GlnD (RefSeq) | — | — |
Not shown: 4 genomes with orthologs for SMc00770 only; 22 genomes with orthologs for SMc01124 only