Conservation of cofitness between RR42_RS00615 and RR42_RS13050 in Cupriavidus basilensis FW507-4G11

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS00615 recombinase XerC 1.0 RR42_RS13050 transaldolase 0.39 15
Ralstonia solanacearum PSI07 0.55 RPSI07_RS23690 tyrosine recombinase XerC 0.74 RPSI07_RS18015 transaldolase low > 81
Ralstonia solanacearum GMI1000 0.54 RS_RS00260 Tyrosine recombinase XerC 1 0.74 RS_RS06170 transaldolase low > 80
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS05065 tyrosine recombinase XerC 0.76 ABZR87_RS11000 transaldolase low > 80
Ralstonia solanacearum UW163 0.52 UW163_RS03905 tyrosine recombinase XerC 0.75 UW163_RS12825 transaldolase — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS09675 tyrosine recombinase XerC 0.75 RALBFv3_RS15360 transaldolase low > 76
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS00355 tyrosine recombinase XerC 0.67 QEN71_RS24595 transaldolase — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS01655 tyrosine recombinase XerC 0.69 BPHYT_RS06045 transaldolase — —
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_02202 integrase/recombinase XerC 0.68 H281DRAFT_00286 transaldolase — —
Paraburkholderia graminis OAS925 0.43 ABIE53_000426 integrase/recombinase XerC 0.69 ABIE53_001416 transaldolase — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS21475 recombinase XerC 0.70 HSERO_RS05500 transaldolase low > 78
Acidovorax sp. GW101-3H11 0.38 Ac3H11_1995 Tyrosine recombinase XerC 0.65 Ac3H11_2059 Transaldolase (EC 2.2.1.2) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF547 Tyrosine recombinase XerC 0.67 GFF1363 Transaldolase (EC 2.2.1.2) low > 90
Castellaniella sp019104865 MT123 0.37 ABCV34_RS13455 tyrosine recombinase XerC 0.62 ABCV34_RS15500 transaldolase low > 48
Variovorax sp. SCN45 0.36 GFF4490 Site-specific tyrosine recombinase XerC 0.64 GFF5266 Transaldolase (EC 2.2.1.2) low > 127
Variovorax sp. OAS795 0.36 ABID97_RS06150 tyrosine recombinase XerC 0.62 ABID97_RS07095 transaldolase low > 91
Pseudomonas sp. S08-1 0.34 OH686_13785 tyrosine recombinase XerC 0.52 OH686_22740 transaldolase low > 80
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_09050 recombinase XerC 0.55 AO353_00310 transaldolase low > 101
Pseudomonas stutzeri RCH2 0.33 Psest_3767 tyrosine recombinase XerC 0.54 Psest_2708 transaldolase low > 67
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_842 Tyrosine recombinase XerC 0.52 PfGW456L13_4009 Transaldolase (EC 2.2.1.2) low > 87
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_12725 recombinase XerC 0.53 AO356_02175 transaldolase low > 104
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4416 Tyrosine recombinase XerC 0.53 Pf6N2E2_2258 Transaldolase (EC 2.2.1.2) low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0185 tyrosine recombinase XerC subunit 0.54 Psyr_1914 transaldolase low > 86
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0185 tyrosine recombinase XerC subunit 0.54 Psyr_1914 transaldolase low > 86
Pseudomonas sp. RS175 0.32 PFR28_04378 Tyrosine recombinase XerC 0.53 PFR28_01142 Transaldolase low > 88
Pseudomonas putida KT2440 0.32 PP_5230 Tyrosine recombinase XerC 0.52 PP_2168 Transaldolase low > 96
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_2171 Tyrosine recombinase XerC 0.52 Pf1N1B4_58 Transaldolase (EC 2.2.1.2) low > 87
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS15025 tyrosine recombinase XerC 0.55 ABZR86_RS12545 transaldolase low > 74
Serratia liquefaciens MT49 0.32 IAI46_00725 tyrosine recombinase XerC 0.55 IAI46_18625 transaldolase low > 86
Pantoea sp. MT58 0.32 IAI47_18400 tyrosine recombinase XerC 0.55 IAI47_16195 transaldolase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF239 Tyrosine recombinase XerC 0.55 GFF1083 Transaldolase (EC 2.2.1.2) — —
Klebsiella michiganensis M5al 0.31 BWI76_RS01210 tyrosine recombinase XerC 0.55 BWI76_RS04270 transaldolase low > 92
Rahnella sp. WP5 0.31 EX31_RS15165 tyrosine recombinase XerC 0.54 EX31_RS20280 transaldolase low > 89
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.45 Xcc-8004.4226.1 Transaldolase (EC 2.2.1.2) — —
Lysobacter sp. OAE881 0.31 ABIE51_RS03035 tyrosine recombinase XerC 0.56 ABIE51_RS02125 transaldolase low > 62
Escherichia coli ECRC100 0.31 OKFHMN_14420 xerC tyrosine recombinase XerC 0.56 OKFHMN_22000 tal transaldolase low > 80
Escherichia coli ECRC101 0.31 MCAODC_04925 xerC tyrosine recombinase XerC 0.56 MCAODC_12530 tal transaldolase — —
Escherichia coli ECRC102 0.31 NIAGMN_12175 xerC tyrosine recombinase XerC 0.56 NIAGMN_19770 tal transaldolase — —
Escherichia coli ECRC98 0.31 JDDGAC_18045 xerC tyrosine recombinase XerC 0.56 JDDGAC_25945 tal transaldolase — —
Escherichia coli ECRC99 0.31 KEDOAH_13730 xerC tyrosine recombinase XerC 0.56 KEDOAH_06220 tal transaldolase — —
Dickeya dadantii 3937 0.31 DDA3937_RS19890 tyrosine recombinase XerC 0.54 DDA3937_RS04350 transaldolase — —
Escherichia coli BW25113 0.31 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.56 b2464 talA transaldolase A (NCBI) low > 76
Escherichia coli BL21 0.31 ECD_03687 site-specific tyrosine recombinase 0.56 ECD_02355 transaldolase A low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_04239 Tyrosine recombinase XerC 0.56 OHPLBJKB_01267 Transaldolase low > 73
Enterobacter asburiae PDN3 0.31 EX28DRAFT_4480 tyrosine recombinase XerC 0.55 EX28DRAFT_0197 transaldolase — —
Escherichia fergusonii Becca 0.31 EFB2_04826 Tyrosine recombinase XerC 0.55 EFB2_01424 Transaldolase low > 86
Escherichia coli ECOR27 0.31 NOLOHH_06550 xerC tyrosine recombinase XerC 0.56 NOLOHH_13680 tal transaldolase low > 75
Escherichia coli Nissle 1917 0.31 ECOLIN_RS21875 tyrosine recombinase XerC 0.56 ECOLIN_RS14060 transaldolase low > 55
Escherichia coli ECOR38 0.31 HEPCGN_13125 xerC tyrosine recombinase XerC 0.56 HEPCGN_21170 tal transaldolase low > 87
Dickeya dianthicola 67-19 0.31 HGI48_RS20045 tyrosine recombinase XerC 0.53 HGI48_RS18325 transaldolase low > 71
Escherichia coli ECRC62 0.31 BNILDI_04985 xerC tyrosine recombinase XerC 0.56 BNILDI_12490 tal transaldolase low > 75
Shewanella loihica PV-4 0.31 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.53 Shew_1089 transaldolase B (RefSeq) — —
Marinobacter adhaerens HP15 0.31 HP15_250 site-specific tyrosine recombinase XerC 0.50 HP15_2241 transaldolase low > 73
Dickeya dianthicola ME23 0.30 DZA65_RS21090 tyrosine recombinase XerC 0.53 DZA65_RS19465 transaldolase low > 75
Shewanella sp. ANA-3 0.30 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.54 Shewana3_3147 transaldolase B (RefSeq) — —
Shewanella oneidensis MR-1 0.30 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.54 SO3546 tal transaldolase (NCBI ptt file) — —
Pectobacterium carotovorum WPP14 0.30 HER17_RS01350 tyrosine recombinase XerC 0.55 HER17_RS02815 transaldolase low > 75
Shewanella amazonensis SB2B 0.30 Sama_3247 integrase/recombinase XerC (RefSeq) 0.54 Sama_0913 transaldolase B (RefSeq) — —
Enterobacter sp. TBS_079 0.30 MPMX20_04465 Tyrosine recombinase XerC 0.55 MPMX20_03325 Transaldolase low > 85
Erwinia tracheiphila SCR3 0.29 LU632_RS24135 xerC tyrosine recombinase XerC 0.54 LU632_RS06725 tal transaldolase — —
Pseudomonas simiae WCS417 0.29 PS417_27595 recombinase XerC 0.58 PS417_07730 transaldolase — —
Pseudomonas fluorescens SBW25 0.29 PFLU_RS29280 tyrosine recombinase XerC 0.58 PFLU_RS07805 transaldolase low > 109
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS29280 tyrosine recombinase XerC 0.58 PFLU_RS07805 transaldolase low > 109
Alteromonas macleodii MIT1002 0.28 MIT1002_00157 Tyrosine recombinase XerC 0.53 MIT1002_03080 Transaldolase B — —
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_00650 tyrosine recombinase XerC 0.54 CSW01_17325 transaldolase low > 62
Rhodospirillum rubrum S1H 0.22 Rru_A1220 Phage integrase (NCBI) 0.51 Rru_A1357 Transaldolase AB (NCBI) — —
Rhizobium sp. OAE497 0.21 ABIE40_RS17950 tyrosine recombinase XerC 0.53 ABIE40_RS16940 transaldolase — —
Bosea sp. OAE506 0.21 ABIE41_RS07870 tyrosine recombinase XerC 0.53 ABIE41_RS23900 transaldolase low > 77
Agrobacterium fabrum C58 0.20 Atu2628 site-specific recombinase 0.53 Atu4464 transaldolase B — —

Not shown: 16 genomes with orthologs for RR42_RS00615 only; 1 genomes with orthologs for RR42_RS13050 only