Conservation of cofitness between RR42_RS04710 and RR42_RS11370 in Cupriavidus basilensis FW507-4G11

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS04710 50S rRNA methyltransferase 1.0 RR42_RS11370 ABC transporter ATP-binding protein 0.33 3
Ralstonia sp. UNC404CL21Col 0.85 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.90 ABZR87_RS12165 ABC-F family ATPase low > 80
Ralstonia solanacearum UW163 0.84 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.91 UW163_RS13965 ABC-F family ATPase — —
Ralstonia solanacearum IBSBF1503 0.84 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.91 RALBFv3_RS00635 ABC-F family ATPase low > 76
Ralstonia solanacearum GMI1000 0.84 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.91 RS_RS07315 ABC-F family ATPase — —
Ralstonia solanacearum PSI07 0.84 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.91 RPSI07_RS16870 ABC-F family ATPase low > 81
Paraburkholderia graminis OAS925 0.76 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.82 ABIE53_002379 ATPase subunit of ABC transporter with duplicated ATPase domains — —
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.82 QEN71_RS07090 ABC-F family ATPase low > 153
Herbaspirillum seropedicae SmR1 0.76 HSERO_RS17780 50S rRNA methyltransferase 0.79 HSERO_RS11060 ABC transporter ATP-binding protein — —
Paraburkholderia bryophila 376MFSha3.1 0.75 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.82 H281DRAFT_05171 ATPase components of ABC transporters with duplicated ATPase domains low > 103
Burkholderia phytofirmans PsJN 0.75 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.82 BPHYT_RS11480 heme ABC transporter ATP-binding protein low > 109
Dechlorosoma suillum PS 0.60 Dsui_0451 hypothetical protein 0.70 Dsui_0753 ATPase component of ABC transporters with duplicated ATPase domain 0.52 2
Castellaniella sp019104865 MT123 0.58 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.73 ABCV34_RS03000 ABC-F family ATPase low > 48
Marinobacter adhaerens HP15 0.53 HP15_604 conserved hypothetical protein CHP00246 0.67 HP15_2628 ABC transporter ATP-binding protein-like protein low > 73
Shewanella loihica PV-4 0.50 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.66 Shew_1676 ABC transporter-related protein (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 CSW01_07630 ABC-F family ATPase low > 62
Erwinia tracheiphila SCR3 0.48 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.67 LU632_RS09525 ABC-F family ATPase low > 74
Pectobacterium carotovorum WPP14 0.48 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 HER17_RS07215 ABC-F family ATPase low > 75
Shewanella amazonensis SB2B 0.48 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.67 Sama_1386 ABC transporter, ATP-binding protein (RefSeq) low > 62
Pantoea sp. MT58 0.48 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 IAI47_13150 ABC-F family ATPase 0.53 50
Klebsiella michiganensis M5al 0.48 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.65 BWI76_RS09040 ABC-F family ATPase low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.67 OHPLBJKB_02893 putative ABC transporter ATP-binding protein YbiT — —
Escherichia coli BW25113 0.48 b0636 ybeA hypothetical protein (NCBI) 0.67 b0820 ybiT fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) low > 76
Escherichia coli BL21 0.48 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.67 ECD_00787 ABC-F family putative regulatory ATPase — —
Escherichia coli Nissle 1917 0.48 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.67 ECOLIN_RS04370 ABC-F family ATPase — —
Dickeya dianthicola ME23 0.47 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 DZA65_RS14910 ABC-F family ATPase low > 75
Serratia liquefaciens MT49 0.47 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 IAI46_07820 ABC-F family ATPase low > 86
Dickeya dadantii 3937 0.47 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.65 DDA3937_RS14260 ABC-F family ATPase — —
Rahnella sp. WP5 0.47 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.65 EX31_RS18775 ABC-F family ATPase low > 89
Escherichia coli ECRC62 0.47 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.67 BNILDI_20790 ybiT ABC-F family ATPase — —
Escherichia coli ECRC102 0.47 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.67 NIAGMN_04205 ybiT ABC-F family ATPase — —
Escherichia coli ECRC101 0.47 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.67 MCAODC_25375 ybiT ABC-F family ATPase low > 87
Shewanella oneidensis MR-1 0.47 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.65 SO1690 ABC transporter, ATP-binding protein (NCBI ptt file) low > 76
Escherichia coli ECOR38 0.47 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.67 HEPCGN_01880 ybiT ABC-F family ATPase low > 87
Enterobacter asburiae PDN3 0.47 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.66 EX28DRAFT_2147 ATPase components of ABC transporters with duplicated ATPase domains — —
Escherichia coli ECRC100 0.47 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.67 OKFHMN_06160 ybiT ABC-F family ATPase low > 80
Escherichia fergusonii Becca 0.47 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.67 EFB2_03285 putative ABC transporter ATP-binding protein YbiT low > 86
Escherichia coli ECRC98 0.47 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.67 JDDGAC_09795 ybiT ABC-F family ATPase — —
Escherichia coli ECOR27 0.47 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.67 NOLOHH_22510 ybiT ABC-F family ATPase low > 75
Enterobacter sp. TBS_079 0.47 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.66 MPMX20_01457 putative ABC transporter ATP-binding protein YbiT low > 85
Escherichia coli ECRC99 0.47 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.67 KEDOAH_21750 ybiT ABC-F family ATPase — —
Dickeya dianthicola 67-19 0.47 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 HGI48_RS14235 ABC-F family ATPase — —
Shewanella sp. ANA-3 0.47 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.65 Shewana3_2760 ABC transporter related (RefSeq) low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.67 GFF717 Putative ATPase component of ABC transporter with duplicated ATPase domain 0.65 56
Alteromonas macleodii MIT1002 0.46 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.59 MIT1002_00912 putative ABC transporter ATP-binding protein YheS — —
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 PFLU_RS13740 ABC-F family ATPase low > 109
Pseudomonas fluorescens SBW25 0.43 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 PFLU_RS13740 ABC-F family ATPase low > 109
Pseudomonas simiae WCS417 0.43 PS417_24730 50S rRNA methyltransferase 0.66 PS417_13100 ABC transporter ATP-binding protein — —
Pseudomonas sp. RS175 0.43 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.66 PFR28_01696 putative ABC transporter ATP-binding protein YbiT low > 88
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_15305 50S rRNA methyltransferase 0.63 AO356_27740 ABC transporter ATP-binding protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.63 Pf6N2E2_795 ABC transporter ATP-binding protein uup low > 103
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.63 Pf1N1B4_4749 ABC transporter ATP-binding protein uup — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_4366 Protein of unknown function DUF163 0.64 Psyr_2495 ABC transporter low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_4366 Protein of unknown function DUF163 0.64 Psyr_2495 ABC transporter — —
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_06480 50S rRNA methyltransferase 0.62 AO353_26510 ABC transporter ATP-binding protein low > 101
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.67 PfGW456L13_3023 ABC transporter ATP-binding protein uup low > 87
Pseudomonas stutzeri RCH2 0.42 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.68 Psest_2115 ATPase components of ABC transporters with duplicated ATPase domains low > 67
Pseudomonas putida KT2440 0.42 PP_4808 23S rRNA m3psi1915 methyltransferase 0.67 PP_2936 putative ATP-binding component of a transport system low > 96
Pseudomonas sp. S08-1 0.42 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.68 OH686_00750 Bis-ABC ATPase YbiT low > 80
Fusobacterium nucleatum SB010 0.30 HUW76_07715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 HUW76_03735 ATP-binding cassette domain-containing protein low > 35
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS17055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.42 ABZR88_RS07070 ABC-F family ATP-binding cassette domain-containing protein low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS16470 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 CA265_RS12875 ABC-F family ATPase low > 88
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 HMPREF1078_RS15635 ATP-binding cassette domain-containing protein low > 61
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS15935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.39 HMPREF1058_RS15690 ATP-binding cassette domain-containing protein low > 67
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS11895 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.39 ABI39_RS11680 ATP-binding cassette domain-containing protein low > 72
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS10755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 HMPREF1181_RS04050 ATP-binding cassette domain-containing protein low > 56
Bacteroides ovatus ATCC 8483 0.21 BACOVA_04305 putative rRNA large subunit m3Psi methyltransferase RlmH 0.41 BACOVA_00551 ABC transporter, ATP-binding protein — —
Bacteroides thetaiotaomicron VPI-5482 0.20 BT1562 conserved hypothetical protein (NCBI ptt file) 0.40 BT1242 ABC transporter ATP-binding protein (NCBI ptt file) low > 81

Not shown: 27 genomes with orthologs for RR42_RS04710 only; 2 genomes with orthologs for RR42_RS11370 only