Conservation of cofitness between RR42_RS17675 and RR42_RS07885 in Cupriavidus basilensis FW507-4G11

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS17675 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 1.0 RR42_RS07885 chemotaxis protein CheY 0.49 11
Ralstonia solanacearum PSI07 0.79 RPSI07_RS11275 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.91 RPSI07_RS16070 two-component system response regulator OmpR low > 81
Ralstonia solanacearum GMI1000 0.79 RS_RS13915 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.91 RS_RS08305 two-component system response regulator OmpR — —
Ralstonia solanacearum IBSBF1503 0.78 RALBFv3_RS05970 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.91 RALBFv3_RS01415 two-component system response regulator OmpR low > 76
Ralstonia solanacearum UW163 0.78 UW163_RS07655 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.91 UW163_RS14725 two-component system response regulator OmpR — —
Ralstonia sp. UNC404CL21Col 0.78 ABZR87_RS01630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.90 ABZR87_RS13210 two-component system response regulator OmpR low > 80
Paraburkholderia sabiae LMG 24235 0.73 QEN71_RS27145 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.81 QEN71_RS22030 two-component system response regulator OmpR low > 153
Paraburkholderia bryophila 376MFSha3.1 0.72 H281DRAFT_06288 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.81 H281DRAFT_00886 two component transcriptional regulator, winged helix family low > 103
Paraburkholderia graminis OAS925 0.72 ABIE53_003563 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.81 ABIE53_002101 two-component system phosphate regulon response regulator OmpR low > 113
Burkholderia phytofirmans PsJN 0.72 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.81 BPHYT_RS09315 chemotaxis protein CheY low > 109
Herbaspirillum seropedicae SmR1 0.71 HSERO_RS01965 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.79 HSERO_RS10760 chemotaxis protein CheY — —
Methylophilus sp. DMC18 0.69 GFF2071 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase 0.66 GFF2713 Transcriptional regulatory protein OmpR — —
Dechlorosoma suillum PS 0.67 Dsui_0384 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.63 Dsui_2401 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain low > 51
Variovorax sp. SCN45 0.61 GFF4445 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) 0.72 GFF408 Two-component system response regulator OmpR low > 127
Castellaniella sp019104865 MT123 0.60 ABCV34_RS10690 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.71 ABCV34_RS08585 two-component system response regulator OmpR — —
Pseudomonas simiae WCS417 0.59 PS417_24800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.62 PS417_01170 chemotaxis protein CheY — —
Pseudomonas fluorescens SBW25 0.59 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.61 PFLU_RS01280 two-component system response regulator OmpR — —
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.61 PFLU_RS01280 two-component system response regulator OmpR — —
Variovorax sp. OAS795 0.59 ABID97_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.73 ABID97_RS17265 two-component system response regulator OmpR low > 91
Pseudomonas lactucae CFBP13502 0.59 GEMAOFIL_05114 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.62 GEMAOFIL_00461 Transcriptional regulatory protein OmpR — —
Pseudomonas sp. RS175 0.59 PFR28_03883 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.61 PFR28_04868 Transcriptional regulatory protein OmpR low > 88
Alteromonas macleodii MIT1002 0.59 MIT1002_00168 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 MIT1002_03968 Transcriptional regulatory protein OmpR 0.69 10
Pseudomonas aeruginosa PA14 0.59 IKLFDK_20730 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.60 IKLFDK_27475 two-component system response regulator AmgR low > 100
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF583 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.69 GFF4930 Two-component system response regulator OmpR — —
Pseudomonas putida KT2440 0.58 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.61 PP_0246 two-component system DNA-binding response transcriptional dual regulator low > 96
Shewanella loihica PV-4 0.58 Shew_3144 UDP-N-acetylmuramate (RefSeq) 0.68 Shew_3637 ompR osmolarity response regulator (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.62 Pf6N2E2_3905 Two-component system response regulator OmpR — —
Pseudomonas sp. S08-1 0.58 OH686_09400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.66 OH686_11095 Two-component system response regulator OmpR low > 80
Shewanella oneidensis MR-1 0.58 SO3805 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) 0.66 SO4633 ompR transcriptional regulatory protein OmpR (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.62 AO353_11745 chemotaxis protein CheY — —
Pseudomonas sp. DMC3 0.58 GFF3860 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase 0.62 GFF4183 Transcriptional regulatory protein OmpR low > 89
Pseudomonas sp. BP01 0.58 JOY50_RS23075 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.61 JOY50_RS18350 ompR two-component system response regulator OmpR low > 84
Shewanella sp. ANA-3 0.58 Shewana3_0791 UDP-N-acetylmuramate (RefSeq) 0.66 Shewana3_4017 ompR osmolarity response regulator (RefSeq) low > 73
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_1344 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.61 PfGW456L13_427 Two-component system response regulator OmpR low > 87
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.62 AO356_10170 chemotaxis protein CheY low > 104
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_2676 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.61 Pf1N1B4_1772 Two-component system response regulator OmpR — —
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.65 CSW01_13695 two-component system response regulator OmpR low > 62
Pseudomonas sp. SVBP6 0.58 COO64_RS15685 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.62 COO64_RS00700 ompR two-component system response regulator OmpR low > 93
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.63 Psyr_0258 Two-component response regulator OmpR — —
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.63 Psyr_0258 Two-component response regulator OmpR — —
Pseudomonas stutzeri RCH2 0.58 Psest_0673 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.62 Psest_3995 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 67
Dickeya dadantii 3937 0.57 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 DDA3937_RS19620 two-component system response regulator OmpR low > 74
Shewanella amazonensis SB2B 0.57 Sama_0769 UDP-N-acetylmuramate (RefSeq) 0.68 Sama_3510 ompR osmolarity response regulator (RefSeq) low > 62
Dickeya dianthicola ME23 0.57 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 DZA65_RS20840 two-component system response regulator OmpR low > 75
Dickeya dianthicola 67-19 0.57 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 HGI48_RS19750 two-component system response regulator OmpR low > 71
Escherichia fergusonii Becca 0.56 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.67 EFB2_00423 Transcriptional regulatory protein OmpR low > 86
Escherichia coli ECRC99 0.56 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 KEDOAH_11105 ompR_G63V two-component system response regulator OmpR — —
Escherichia coli ECRC100 0.56 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 OKFHMN_17035 ompR_G63V two-component system response regulator OmpR low > 79
Escherichia coli ECRC98 0.56 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 JDDGAC_20665 ompR_G63V two-component system response regulator OmpR 0.65 17
Escherichia coli ECRC62 0.56 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 BNILDI_02695 ompR_G63V two-component system response regulator OmpR low > 75
Escherichia coli ECRC101 0.56 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 MCAODC_07565 ompR_G63V two-component system response regulator OmpR 0.50 71
Escherichia coli ECOR27 0.56 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 NOLOHH_08825 ompR_G63V two-component system response regulator OmpR low > 76
Escherichia coli ECOR38 0.56 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 HEPCGN_15845 ompR_G63V two-component system response regulator OmpR low > 88
Klebsiella michiganensis M5al 0.56 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 BWI76_RS26665 DNA-binding response regulator low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.67 OHPLBJKB_00298 Transcriptional regulatory protein OmpR 0.39 48
Escherichia coli BL21 0.56 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.66 ECD_03257 response regulator in two-component regulatory system with EnvZ low > 61
Escherichia coli Nissle 1917 0.56 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 ECOLIN_RS19455 two-component system response regulator OmpR low > 55
Escherichia coli ECRC102 0.56 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 NIAGMN_14805 ompR_G63V two-component system response regulator OmpR 0.59 52
Escherichia coli BW25113 0.56 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) 0.67 b3405 ompR osmolarity response regulator (NCBI) low > 76
Klebsiella pneumoniae MKP103 0.56 KDGMDA_11310 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.67 KDGMDA_06980 two-component system response regulator OmpR low > 95
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS11350 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 PagCFBP13505_RS18340 two-component system response regulator OmpR low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.67 GFF613 Two-component system response regulator OmpR low > 78
Enterobacter sp. TBS_079 0.55 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.67 MPMX20_04292 Transcriptional regulatory protein OmpR low > 85
Pectobacterium carotovorum WPP14 0.55 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 HER17_RS01700 two-component system response regulator OmpR low > 75
Pantoea sp. MT58 0.55 IAI47_02755 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 IAI47_01820 two-component system response regulator OmpR low > 76
Serratia liquefaciens MT49 0.55 IAI46_01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 IAI46_23790 two-component system response regulator OmpR low > 86
Enterobacter asburiae PDN3 0.55 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.67 EX28DRAFT_4138 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 76
Acidovorax sp. GW101-3H11 0.54 Ac3H11_4032 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.72 Ac3H11_343 Two-component system response regulator OmpR — —
Erwinia tracheiphila HP pepo 2.2 0.54 IJEDHG_06780 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.67 IJEDHG_11955 ompR_G63V two-component system response regulator OmpR — —
Erwinia tracheiphila SCR3 0.54 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 LU632_RS22940 ompR two-component system response regulator OmpR low > 74
Erwinia amylovora T8 0.54 OLJFJH_02365 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.67 OLJFJH_04160 two-component system response regulator OmpR low > 58
Rahnella sp. WP5 0.54 EX31_RS08665 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 EX31_RS04800 two-component system response regulator OmpR low > 89
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_2035 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.65 B158DRAFT_0684 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 40
Acinetobacter baumannii LAC-4 0.50 RR41_RS18930 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.63 RR41_RS01390 two-component system response regulator OmpR — —
Acinetobacter radioresistens SK82 0.48 MPMX26_03053 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.63 MPMX26_02838 Transcriptional regulatory protein OmpR low > 36
Lysobacter sp. OAE881 0.46 ABIE51_RS17450 Mur ligase family protein 0.39 ABIE51_RS14390 response regulator low > 62

Not shown: 9 genomes with orthologs for RR42_RS17675 only; 5 genomes with orthologs for RR42_RS07885 only