Conservation of cofitness between Psyr_3888 and Psyr_3592 in Pseudomonas syringae pv. syringae B728a

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 1.0 Psyr_3592 Nitroreductase 0.30 20
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 1.00 Psyr_3592 Nitroreductase low > 86
Pseudomonas simiae WCS417 0.92 PS417_05655 endonuclease III 0.71 PS417_22730 nitroreductase — —
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS05740 endonuclease III 0.73 PFLU_RS24370 NAD(P)H nitroreductase low > 109
Pseudomonas fluorescens SBW25 0.92 PFLU_RS05740 endonuclease III 0.73 PFLU_RS24370 NAD(P)H nitroreductase low > 109
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_04085 endonuclease III 0.64 AO353_18485 nitroreductase low > 101
Pseudomonas putida KT2440 0.90 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites 0.68 PP_4506 Nitroreductase family protein low > 96
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) 0.71 Pf1N1B4_3544 Nitroreductase family protein low > 87
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_18345 endonuclease III 0.70 AO356_03990 nitroreductase low > 104
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) 0.72 PfGW456L13_4412 Nitroreductase family protein low > 87
Pseudomonas sp. S08-1 0.90 OH686_03910 endonuclease III 0.59 OH686_20760 Putative NAD(P)H nitroreductase YdjA low > 80
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 0.72 Pf6N2E2_2633 Nitroreductase family protein low > 103
Pseudomonas sp. RS175 0.90 PFR28_03349 Endonuclease III 0.70 PFR28_00799 Putative NAD(P)H nitroreductase YdjA low > 88
Pseudomonas stutzeri RCH2 0.86 Psest_3118 endonuclease III 0.61 Psest_1881 Nitroreductase low > 67
Marinobacter adhaerens HP15 0.76 HP15_1285 endonuclease III 0.38 HP15_1466 nitroreductase family protein low > 73
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.35 B158DRAFT_1412 Nitroreductase low > 40
Escherichia coli BW25113 0.73 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.41 b1765 ydjA predicted oxidoreductase (NCBI) low > 76
Escherichia coli ECRC62 0.73 BNILDI_16835 nth endonuclease III 0.41 BNILDI_16115 ydjA NAD(P)H nitroreductase low > 75
Escherichia coli ECOR27 0.73 NOLOHH_18045 nth endonuclease III 0.41 NOLOHH_17330 ydjA NAD(P)H nitroreductase — —
Escherichia fergusonii Becca 0.73 EFB2_02359 Endonuclease III 0.41 EFB2_02229 Putative NAD(P)H nitroreductase YdjA 0.26 53
Escherichia coli Nissle 1917 0.73 ECOLIN_RS09110 endonuclease III 0.41 ECOLIN_RS09845 NAD(P)H nitroreductase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02093 Endonuclease III 0.41 OHPLBJKB_01967 Putative NAD(P)H nitroreductase YdjA low > 73
Escherichia coli BL21 0.73 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.41 ECD_01734 putative oxidoreductase — —
Escherichia coli ECOR38 0.73 HEPCGN_05910 nth endonuclease III 0.41 HEPCGN_05190 ydjA NAD(P)H nitroreductase low > 87
Pantoea sp. MT58 0.73 IAI47_10475 endonuclease III 0.40 IAI47_08975 NAD(P)H nitroreductase low > 76
Erwinia tracheiphila SCR3 0.73 LU632_RS11305 nth endonuclease III 0.40 LU632_RS12965 NAD(P)H nitroreductase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF3641 Endonuclease III (EC 4.2.99.18) 0.39 GFF3484 FIG002003: Protein YdjA low > 78
Escherichia coli ECRC102 0.73 NIAGMN_00540 nth endonuclease III 0.41 NIAGMN_01245 ydjA NAD(P)H nitroreductase — —
Escherichia coli ECRC101 0.73 MCAODC_17885 nth endonuclease III 0.41 MCAODC_18590 ydjA NAD(P)H nitroreductase low > 87
Escherichia coli ECRC99 0.73 KEDOAH_00580 nth endonuclease III 0.41 KEDOAH_01290 ydjA NAD(P)H nitroreductase — —
Escherichia coli ECRC98 0.73 JDDGAC_02115 nth endonuclease III 0.41 JDDGAC_01395 ydjA NAD(P)H nitroreductase low > 86
Escherichia coli ECRC100 0.73 OKFHMN_27525 nth endonuclease III 0.41 OKFHMN_26820 ydjA NAD(P)H nitroreductase low > 80
Pectobacterium carotovorum WPP14 0.72 HER17_RS10860 endonuclease III 0.38 HER17_RS11100 NAD(P)H nitroreductase low > 75
Enterobacter asburiae PDN3 0.72 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.41 EX28DRAFT_1766 Nitroreductase low > 76
Rahnella sp. WP5 0.71 EX31_RS06590 endonuclease III 0.38 EX31_RS06310 NAD(P)H nitroreductase low > 89
Klebsiella michiganensis M5al 0.71 BWI76_RS16385 endonuclease III 0.42 BWI76_RS11590 NAD(P)H nitroreductase — —
Serratia liquefaciens MT49 0.71 IAI46_11455 endonuclease III 0.42 IAI46_14320 NAD(P)H nitroreductase low > 86
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_05145 endonuclease III 0.37 CSW01_05335 NAD(P)H nitroreductase low > 62
Enterobacter sp. TBS_079 0.71 MPMX20_02005 Endonuclease III 0.40 MPMX20_01851 Putative NAD(P)H nitroreductase YdjA low > 85
Shewanella oneidensis MR-1 0.71 SO2514 nth endonuclease III (NCBI ptt file) 0.39 SO2708 nitroreductase family protein (NCBI ptt file) low > 76
Acinetobacter radioresistens SK82 0.70 MPMX26_02306 Endonuclease III 0.36 MPMX26_01115 Putative NAD(P)H nitroreductase YdjA low > 36
Rhodanobacter denitrificans MT42 0.70 LRK55_RS01640 endonuclease III 0.35 LRK55_RS03610 nitroreductase low > 63
Rhodanobacter denitrificans FW104-10B01 0.70 LRK54_RS01850 endonuclease III 0.35 LRK54_RS03860 nitroreductase low > 59
Dickeya dianthicola ME23 0.70 DZA65_RS11025 endonuclease III 0.39 DZA65_RS10780 NAD(P)H nitroreductase low > 75
Dickeya dianthicola 67-19 0.70 HGI48_RS10545 endonuclease III 0.40 HGI48_RS10305 NAD(P)H nitroreductase low > 71
Shewanella amazonensis SB2B 0.70 Sama_1836 endonuclease III (RefSeq) 0.38 Sama_1457 nitroreductase family protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.69 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.40 Shewana3_2494 nitroreductase (RefSeq) low > 73
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS08185 endonuclease III 0.32 ABZR86_RS22155 nitroreductase low > 74
Variovorax sp. SCN45 0.69 GFF418 Endonuclease III (EC 4.2.99.18) 0.36 GFF205 Nitroreductase family protein low > 127
Dickeya dadantii 3937 0.69 DDA3937_RS10545 endonuclease III 0.40 DDA3937_RS10295 NAD(P)H nitroreductase low > 74
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) 0.34 Xcc-8004.4214.1 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) low > 74
Shewanella loihica PV-4 0.68 Shew_2072 endonuclease III (RefSeq) 0.40 Shew_1740 nitroreductase (RefSeq) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.68 GFF4003 Endonuclease III (EC 4.2.99.18) 0.30 GFF5834 nitroreductase — —
Paraburkholderia graminis OAS925 0.68 ABIE53_001423 endonuclease-3 0.31 ABIE53_001681 nitroreductase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III 0.31 H281DRAFT_04933 Nitroreductase low > 103
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_04675 nth endonuclease III 0.35 OKGIIK_10710 Putative NAD(P)H nitroreductase low > 52
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS06080 endonuclease IV 0.36 BPHYT_RS35735 nitroreductase low > 109
Lysobacter sp. OAE881 0.66 ABIE51_RS07560 endonuclease III 0.31 ABIE51_RS05520 nitroreductase low > 62
Castellaniella sp019104865 MT123 0.65 ABCV34_RS08465 endonuclease III 0.27 ABCV34_RS04210 nitroreductase low > 48
Azospirillum brasilense Sp245 0.61 AZOBR_RS01565 endonuclease III 0.34 AZOBR_RS29250 oxidoreductase — —
Bosea sp. OAE506 0.58 ABIE41_RS03410 endonuclease III 0.32 ABIE41_RS14115 nitroreductase — —
Phaeobacter inhibens DSM 17395 0.57 PGA1_c29040 endonuclease III 0.22 PGA1_c24460 putative nitroreductase low > 62
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.24 Ga0059261_1311 Nitroreductase low > 68
Dinoroseobacter shibae DFL-12 0.56 Dshi_3023 endonuclease III (RefSeq) 0.27 Dshi_2627 nitroreductase (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.55 A4249_RS15000 endonuclease III 0.21 A4249_RS08265 nitroreductase low > 48
Caulobacter crescentus NA1000 0.51 CCNA_03847 endonuclease III 0.25 CCNA_02736 nitroreductase family low > 66
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_03847 endonuclease III 0.25 CCNA_02736 nitroreductase family low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.43 CA264_14955 endonuclease III 0.18 CA264_09355 nitroreductase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS16725 endonuclease III 0.15 ABZR88_RS12085 nitroreductase low > 71
Alteromonas macleodii MIT1002 0.32 MIT1002_01251 Endonuclease III 0.38 MIT1002_01842 Putative NAD(P)H nitroreductase YdjA low > 70

Not shown: 25 genomes with orthologs for Psyr_3888 only; 4 genomes with orthologs for Psyr_3592 only