Conservation of cofitness between Psyr_2997 and Psyr_0025 in Pseudomonas syringae pv. syringae B728a

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_2997 Glycoside hydrolase, family 13, N-terminal:Alpha amylase, catalytic region 1.0 Psyr_0025 shikimate dehydrogenase 0.39 14
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_2997 Glycoside hydrolase, family 13, N-terminal:Alpha amylase, catalytic region 1.00 Psyr_0025 shikimate dehydrogenase 0.48 43
Pseudomonas sp. DMC3 0.86 GFF3487 Glycogen operon protein GlgX 0.81 GFF600 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_26000 glycogen debranching protein 0.81 AO356_11315 shikimate dehydrogenase low > 104
Pseudomonas sp. RS175 0.86 PFR28_02150 Glycogen operon protein GlgX 0.81 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas fluorescens FW300-N2E2 0.86 Pf6N2E2_1073 Glycogen debranching enzyme (EC 3.2.1.-) 0.81 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS16435 glycogen debranching protein GlgX 0.81 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.85 PFLU_RS16435 glycogen debranching protein GlgX 0.81 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_4682 Glycogen debranching enzyme (EC 3.2.1.-) 0.83 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 87
Pseudomonas simiae WCS417 0.85 PS417_14505 glycogen debranching protein 0.83 PS417_00125 shikimate dehydrogenase — —
Pseudomonas lactucae CFBP13502 0.85 GEMAOFIL_03190 Glycogen operon protein GlgX 0.81 GEMAOFIL_00231 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas orientalis W4I3 0.85 QF045_RS15290 glycogen debranching protein GlgX 0.81 QF045_RS03060 shikimate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_3250 Glycogen debranching enzyme (EC 3.2.1.-) 0.82 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 87
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_23750 glycogen debranching protein 0.82 AO353_10670 shikimate dehydrogenase low > 101
Pseudomonas sp. SVBP6 0.83 COO64_RS24790 glgX glycogen debranching protein GlgX 0.80 COO64_RS02250 aroE shikimate dehydrogenase — —
Pseudomonas putida KT2440 0.81 PP_4055 Glycogen debranching enzyme 0.77 PP_0074 shikimate 5-dehydrogenase — —
Pseudomonas sp. BP01 0.81 JOY50_RS06735 glgX glycogen debranching protein GlgX 0.77 JOY50_RS08210 aroE shikimate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.81 Psest_2167 glycogen debranching enzyme GlgX 0.73 Psest_0029 shikimate 5-dehydrogenase — —
Pseudomonas sp. S08-1 0.77 OH686_01305 glycogen debranching enzyme GlgX 0.75 OH686_12485 Shikimate 5-dehydrogenase I alpha low > 80
Pseudomonas aeruginosa PUPa3 0.75 DQ20_RS39320 glgX;go_function=glycogen glycogen debranching protein GlgX 0.70 DQ20_RS58730 aroE;go_function=shikimate shikimate dehydrogenase — —
Pseudomonas aeruginosa PA14 0.75 IKLFDK_10570 glycogen debranching protein GlgX 0.70 IKLFDK_25435 shikimate dehydrogenase — —
Pseudomonas aeruginosa MRSN321 0.74 DY961_RS17060 glgX;go_function=glycogen glycogen debranching protein GlgX 0.70 DY961_RS26325 aroE;go_function=shikimate shikimate dehydrogenase — —
Azospirillum sp. SherDot2 0.70 MPMX19_04929 Glycogen operon protein GlgX 0.18 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) — —
Azospirillum brasilense Sp245 0.69 AZOBR_RS19445 glycogen debranching protein 0.20 AZOBR_RS01765 shikimate 5-dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_02812 glycogen operon protein 0.48 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) — —
Paraburkholderia graminis OAS925 0.68 ABIE53_005979 isoamylase 0.48 ABIE53_003560 shikimate dehydrogenase — —
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS26285 glycogen debranching protein 0.48 BPHYT_RS16975 shikimate 5-dehydrogenase low > 109
Rahnella sp. WP5 0.66 EX31_RS07170 glycogen debranching protein GlgX 0.44 EX31_RS15950 shikimate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS10560 glycogen debranching protein GlgX 0.49 QEN71_RS27130 shikimate dehydrogenase low > 153
Rhodopseudomonas palustris CGA009 0.62 TX73_017120 glycogen debranching protein GlgX 0.21 TX73_022410 shikimate dehydrogenase — —
Xanthomonas campestris pv. campestris strain 8004 0.61 Xcc-8004.544.1 Glycogen debranching enzyme (EC 3.2.1.-) 0.35 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 74
Rhodospirillum rubrum S1H 0.56 Rru_A0505 Glycogen debranching enzyme GlgX (NCBI) 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) — —
Variovorax sp. SCN45 0.55 GFF770 Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196) 0.37 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 127
Variovorax sp. OAS795 0.55 ABID97_RS12155 glycogen debranching protein GlgX 0.34 ABID97_RS06300 shikimate dehydrogenase — —
Magnetospirillum magneticum AMB-1 0.54 AMB_RS15425 glycogen debranching enzyme GlgX 0.18 AMB_RS23010 shikimate dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS17210 glycogen debranching protein GlgX 0.46 ABZR87_RS01605 shikimate dehydrogenase low > 80
Rhizobium sp. OAE497 0.53 ABIE40_RS30515 glycogen debranching protein GlgX 0.19 ABIE40_RS19250 shikimate dehydrogenase — —
Enterobacter asburiae PDN3 0.52 EX28DRAFT_1157 glycogen debranching enzyme GlgX 0.46 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Klebsiella michiganensis M5al 0.52 BWI76_RS14140 glycogen debranching enzyme 0.47 BWI76_RS25645 shikimate dehydrogenase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF2548 Glycogen debranching enzyme (EC 3.2.1.-) 0.46 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 78
Enterobacter sp. TBS_079 0.52 MPMX20_02327 Glycogen operon protein GlgX 0.47 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) low > 85
Pantoea sp. MT58 0.51 IAI47_10665 glycogen debranching protein GlgX 0.49 IAI47_02315 shikimate dehydrogenase — —
Pantoea agglomerans CFBP13505 P0401 0.51 PagCFBP13505_RS05470 glycogen debranching protein GlgX 0.47 PagCFBP13505_RS22560 shikimate dehydrogenase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.51 ABZR88_RS11805 glycogen debranching protein GlgX 0.12 ABZR88_RS20055 shikimate dehydrogenase — —
Bosea sp. OAE506 0.50 ABIE41_RS13065 glycogen debranching protein GlgX 0.19 ABIE41_RS04650 shikimate dehydrogenase — —
Ralstonia solanacearum GMI1000 0.50 RS_RS18300 glycogen debranching enzyme GlgX 0.48 RS_RS13890 shikimate dehydrogenase low > 80
Xanthobacter sp. DMC5 0.50 GFF1456 Glycogen operon protein GlgX 0.20 GFF3737 Shikimate dehydrogenase (NADP(+)) — —
Ralstonia solanacearum PSI07 0.50 RPSI07_RS00880 glycogen debranching enzyme GlgX 0.48 RPSI07_RS11300 shikimate dehydrogenase low > 81
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS12505 glycogen debranching protein 0.55 HSERO_RS01990 shikimate 5-dehydrogenase low > 78
Ralstonia solanacearum UW163 0.48 UW163_RS22855 glycogen debranching enzyme GlgX 0.48 UW163_RS07680 shikimate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS22310 glycogen debranching enzyme GlgX 0.48 RALBFv3_RS05945 shikimate dehydrogenase low > 76
Shewanella sp. ANA-3 0.47 Shewana3_2933 glycogen debranching enzyme GlgX (RefSeq) 0.53 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.46 SO1495 glgX glycogen operon protein (NCBI ptt file) 0.50 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) low > 76
Sinorhizobium meliloti 1021 0.46 SM_b21446 glycosyl hydrolase 0.22 SMc02791 shikimate 5-dehydrogenase — —
Shewanella loihica PV-4 0.45 Shew_1169 glycogen debranching enzyme GlgX (RefSeq) 0.51 Shew_3727 shikimate 5-dehydrogenase (RefSeq) low > 60
Serratia liquefaciens MT49 0.38 IAI46_23935 glycogen debranching protein GlgX 0.46 IAI46_23240 shikimate dehydrogenase low > 87
Klebsiella pneumoniae MKP103 0.37 KDGMDA_07095 glycogen debranching protein GlgX 0.48 KDGMDA_06515 shikimate dehydrogenase low > 95
Escherichia coli ECOR27 0.37 NOLOHH_08680 glgX glycogen debranching protein GlgX 0.49 NOLOHH_09355 aroE shikimate dehydrogenase low > 76
Escherichia coli ECRC100 0.37 OKFHMN_16890 glgX glycogen debranching protein GlgX 0.49 OKFHMN_17565 aroE shikimate dehydrogenase low > 79
Escherichia coli ECRC102 0.37 NIAGMN_14660 glgX glycogen debranching protein GlgX 0.49 NIAGMN_15325 aroE shikimate dehydrogenase low > 80
Escherichia coli ECRC98 0.37 JDDGAC_20520 glgX glycogen debranching protein GlgX 0.49 JDDGAC_21185 aroE shikimate dehydrogenase low > 87
Escherichia coli BW25113 0.37 b3431 glgX glycogen debranching enzyme (NCBI) 0.49 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) low > 76
Escherichia coli ECOR38 0.37 HEPCGN_15705 glgX glycogen debranching protein GlgX 0.47 HEPCGN_16385 aroE shikimate dehydrogenase low > 88
Escherichia coli ECRC101 0.37 MCAODC_07420 glgX glycogen debranching protein GlgX 0.49 MCAODC_08085 aroE shikimate dehydrogenase low > 87
Escherichia coli ECRC99 0.37 KEDOAH_11250 glgX glycogen debranching protein GlgX 0.49 KEDOAH_10585 aroE shikimate dehydrogenase — —
Escherichia coli BL21 0.37 ECD_03283 glycogen debranching enzyme 0.49 ECD_03132 dehydroshikimate reductase, NAD(P)-binding low > 61
Escherichia fergusonii Becca 0.37 EFB2_00388 Glycogen debranching enzyme 0.48 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.62 17
Escherichia coli ECRC62 0.37 BNILDI_02835 glgX glycogen debranching protein GlgX 0.49 BNILDI_02165 aroE shikimate dehydrogenase low > 75
Pectobacterium carotovorum WPP14 0.37 HER17_RS01490 glycogen debranching protein GlgX 0.46 HER17_RS02250 shikimate dehydrogenase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_00270 Glycogen debranching enzyme 0.49 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) low > 74
Escherichia coli Nissle 1917 0.37 ECOLIN_RS19635 glycogen debranching protein GlgX 0.49 ECOLIN_RS18840 shikimate dehydrogenase low > 55
Dickeya dadantii 3937 0.36 DDA3937_RS19740 glycogen debranching protein GlgX 0.46 DDA3937_RS19100 shikimate dehydrogenase — —
Dickeya dianthicola 67-19 0.36 HGI48_RS19850 glycogen debranching protein GlgX 0.46 HGI48_RS19190 shikimate dehydrogenase — —
Dickeya dianthicola ME23 0.36 DZA65_RS20925 glycogen debranching protein GlgX 0.47 DZA65_RS20315 shikimate dehydrogenase — —
Erwinia amylovora T8 0.36 OLJFJH_04255 glycogen debranching protein GlgX 0.43 OLJFJH_03685 shikimate dehydrogenase — —
Alteromonas macleodii MIT1002 0.35 MIT1002_02398 Glycogen debranching enzyme 0.37 MIT1002_00029 Shikimate dehydrogenase — —
Synechocystis sp000284455 PCC 6803 0.34 SGL_RS07435 glycogen debranching protein GlgX 0.17 SGL_RS17415 shikimate dehydrogenase — —
Shewanella amazonensis SB2B 0.34 Sama_2452 glycogen operon protein (RefSeq) 0.47 Sama_0052 shikimate dehydrogenase (RefSeq) low > 62
Agrobacterium fabrum C58 0.33 Atu4073 glycogen debranching protein 0.23 Atu0003 shikimate 5-dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_19235 glycogen debranching enzyme GlgX 0.58 CSW01_00280 shikimate dehydrogenase low > 62

Not shown: 6 genomes with orthologs for Psyr_2997 only; 30 genomes with orthologs for Psyr_0025 only