| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E2 | 1.0 | Pf6N2E2_5960 | | Putative deoxyribonuclease YcfH | 1.0 | Pf6N2E2_5711 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.42 | 5 |
| Pseudomonas fluorescens FW300-N2C3 | 0.99 | AO356_20205 | | hydrolase TatD | 0.99 | AO356_19000 | | tRNA 2-thiocytidine biosynthesis protein TtcA | low | > 104 |
| Pseudomonas sp. RS175 | 0.96 | PFR28_03002 | | putative metal-dependent hydrolase YcfH | 0.99 | PFR28_03236 | | tRNA-cytidine(32) 2-sulfurtransferase | low | > 88 |
| Pseudomonas sp. DMC3 | 0.93 | GFF4749 | | putative metal-dependent hydrolase YcfH | 0.95 | GFF4833 | | tRNA-cytidine(32) 2-sulfurtransferase | low | > 89 |
| Pseudomonas fluorescens GW456-L13 | 0.92 | PfGW456L13_2112 | | Putative deoxyribonuclease YcfH | 0.96 | PfGW456L13_2020 | | tRNA(Cytosine32)-2-thiocytidine synthetase | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.91 | AO353_01325 | | hydrolase TatD | 0.97 | AO353_02780 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.21 | 74 |
| Pseudomonas simiae WCS417 | 0.91 | PS417_21405 | | hydrolase TatD | 0.95 | PS417_16415 | | tRNA 2-thiocytidine biosynthesis protein TtcA | low | > 88 |
| Pseudomonas lactucae CFBP13502 | 0.90 | GEMAOFIL_04425 | | putative metal-dependent hydrolase YcfH | 0.95 | GEMAOFIL_03610 | | tRNA-cytidine(32) 2-sulfurtransferase | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.89 | PFLU_RS23020 | | TatD family hydrolase | 0.95 | PFLU_RS18455 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.89 | PFLU_RS23020 | | TatD family hydrolase | 0.95 | PFLU_RS18455 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.89 | Pf1N1B4_420 | | Putative deoxyribonuclease YcfH | 0.96 | Pf1N1B4_3491 | | tRNA(Cytosine32)-2-thiocytidine synthetase | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.89 | Psyr_1655 | | TatD-related deoxyribonuclease | 0.95 | Psyr_3705 | | conserved hypothetical protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.89 | Psyr_1655 | | TatD-related deoxyribonuclease | 0.95 | Psyr_3705 | | conserved hypothetical protein | low | > 86 |
| Pseudomonas putida KT2440 | 0.86 | PP_1967 | | tRNA D-aminoacylase | 0.92 | PP_1641 | | tRNA 2-thiocytidine biosynthesis protein TtcA | low | > 96 |
| Pseudomonas sp. BP01 | 0.85 | JOY50_RS16755 | | TatD family hydrolase | 0.93 | JOY50_RS23840 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 84 |
| Pseudomonas stutzeri RCH2 | 0.85 | Psest_1696 | | hydrolase, TatD family | 0.90 | Psest_3033 | | Predicted ATPase of the PP-loop superfamily implicated in cell cycle control | low | > 67 |
| Pseudomonas sp. S08-1 | 0.84 | OH686_22180 | | Uncharacterized metal-dependent hydrolase YcfH | 0.89 | OH686_05145 | | tRNA-(cytosine32)-2-thiocytidine synthetase TtcA | low | > 80 |
| Pseudomonas sp. SVBP6 | 0.82 | COO64_RS05770 | | TatD family hydrolase | 0.95 | COO64_RS07395 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 93 |
| Pseudomonas aeruginosa PA14 | 0.80 | IKLFDK_15055 | | hydrolase TatD | 0.91 | IKLFDK_05600 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 100 |
| Kangiella aquimarina DSM 16071 | 0.55 | B158DRAFT_1745 | | hydrolase, TatD family | 0.71 | B158DRAFT_2154 | | tRNA s(2)C-32 sulfurtransferase (EC 2.8.1.4) | low | > 40 |
| Shewanella loihica PV-4 | 0.51 | Shew_1582 | | TatD family hydrolase (RefSeq) | 0.69 | Shew_1995 | | PP-loop domain-containing protein (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.51 | Sama_2040 | | TatD family hydrolase (RefSeq) | 0.73 | Sama_1801 | | hypothetical protein (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_10060 | | YchF/TatD family DNA exonuclease | 0.71 | CSW01_07180 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.50 | MIT1002_01740 | | putative deoxyribonuclease YcfH | 0.71 | MIT1002_02139 | | tRNA 2-thiocytidine biosynthesis protein TtcA | low | > 70 |
| Methylophilus sp. DMC18 | 0.49 | GFF632 | | putative metal-dependent hydrolase YcfH | 0.63 | GFF1541 | | tRNA-cytidine(32) 2-sulfurtransferase | low | > 43 |
| Shewanella oneidensis MR-1 | 0.49 | SO2610 | | hydrolase, TatD family (NCBI ptt file) | 0.72 | SO2354 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.49 | ABZR87_RS12460 | | TatD family hydrolase | 0.67 | ABZR87_RS05700 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 80 |
| Dickeya dianthicola 67-19 | 0.48 | HGI48_RS13150 | | metal-dependent hydrolase | 0.70 | HGI48_RS12410 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 71 |
| Dickeya dianthicola ME23 | 0.48 | DZA65_RS13620 | | metal-dependent hydrolase | 0.70 | DZA65_RS12850 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 75 |
| Ralstonia solanacearum IBSBF1503 | 0.48 | RALBFv3_RS01010 | | TatD family deoxyribonuclease | 0.67 | RALBFv3_RS10245 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.48 | UW163_RS14320 | | TatD family deoxyribonuclease | 0.67 | UW163_RS03335 | | tRNA 2-thiocytidine(32) synthetase TtcA | — | — |
| Ralstonia solanacearum GMI1000 | 0.48 | RS_RS09020 | | TatD family deoxyribonuclease | 0.67 | RS_RS00865 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 80 |
| Dickeya dadantii 3937 | 0.48 | DDA3937_RS13085 | | metal-dependent hydrolase | 0.70 | DDA3937_RS12330 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.48 | HER17_RS08685 | | metal-dependent hydrolase | 0.69 | HER17_RS09605 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 75 |
| Cupriavidus basilensis FW507-4G11 | 0.48 | RR42_RS10885 | | DNAase | 0.66 | RR42_RS01445 | | tRNA 2-thiocytidine biosynthesis protein TtcA | low | > 128 |
| Rahnella sp. WP5 | 0.48 | EX31_RS24470 | | metal-dependent hydrolase | 0.67 | EX31_RS06375 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 89 |
| Dechlorosoma suillum PS | 0.47 | Dsui_2652 | | hydrolase, TatD family | 0.63 | Dsui_0695 | | putative ATPase of the PP-loop superfamily implicated in cell cycle control | low | > 51 |
| Pantoea sp. MT58 | 0.47 | IAI47_12035 | | metal-dependent hydrolase | 0.70 | IAI47_09475 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 76 |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS12995 | | DNAase | 0.64 | HSERO_RS22035 | | tRNA 2-thiocytidine biosynthesis protein TtcA | low | > 78 |
| Serratia liquefaciens MT49 | 0.47 | IAI46_09825 | | metal-dependent hydrolase | 0.69 | IAI46_13420 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 86 |
| Ralstonia solanacearum PSI07 | 0.47 | RPSI07_RS16465 | | TatD family deoxyribonuclease | 0.67 | RPSI07_RS23130 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 81 |
| Erwinia tracheiphila SCR3 | 0.47 | LU632_RS14785 | | metal-dependent hydrolase | 0.70 | LU632_RS12165 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 74 |
| Pantoea agglomerans CFBP13505 P0401 | 0.47 | PagCFBP13505_RS05300 | | metal-dependent hydrolase | 0.69 | PagCFBP13505_RS06680 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.56 | 44 |
| Klebsiella michiganensis M5al | 0.46 | BWI76_RS11125 | | metal-dependent hydrolase | 0.69 | BWI76_RS12710 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 92 |
| Castellaniella sp019104865 MT123 | 0.46 | ABCV34_RS03960 | | TatD family hydrolase | 0.62 | ABCV34_RS10450 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 48 |
| Klebsiella pneumoniae MKP103 | 0.46 | KDGMDA_18730 | | metal-dependent hydrolase | 0.70 | KDGMDA_20605 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 95 |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_01780 | | putative metal-dependent hydrolase YcfH | 0.69 | MPMX20_02440 | | tRNA-cytidine(32) 2-sulfurtransferase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.45 | EX28DRAFT_1829 | | hydrolase, TatD family | 0.69 | EX28DRAFT_1007 | | Predicted ATPase of the PP-loop superfamily implicated in cell cycle control | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.45 | GFF3382 | | Putative deoxyribonuclease YcfH | 0.69 | GFF2648 | | tRNA(Cytosine32)-2-thiocytidine synthetase | low | > 78 |
| Escherichia coli ECOR38 | 0.44 | HEPCGN_23940 | ycfH | metal-dependent hydrolase | 0.70 | HEPCGN_26005 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 88 |
| Escherichia coli ECOR27 | 0.44 | NOLOHH_21070 | ycfH | metal-dependent hydrolase | 0.70 | NOLOHH_19870 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | — | — |
| Escherichia coli Nissle 1917 | 0.44 | ECOLIN_RS06350 | | metal-dependent hydrolase | 0.70 | ECOLIN_RS08065 | | tRNA 2-thiocytidine(32) synthetase TtcA | — | — |
| Escherichia coli ECRC62 | 0.44 | BNILDI_19230 | ycfH | metal-dependent hydrolase | 0.70 | BNILDI_18020 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 75 |
| Escherichia coli ECRC101 | 0.44 | MCAODC_22900 | ycfH | metal-dependent hydrolase | 0.70 | MCAODC_16100 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 88 |
| Escherichia coli ECRC98 | 0.44 | JDDGAC_07200 | ycfH | metal-dependent hydrolase | 0.70 | JDDGAC_04715 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 87 |
| Escherichia coli BL21 | 0.44 | ECD_01096 | | putative DNase | 0.70 | ECD_01321 | | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein | low | > 61 |
| Escherichia coli BW25113 | 0.44 | b1100 | ycfH | predicted metallodependent hydrolase (NCBI) | 0.70 | b1344 | ydaO | predicted C32 tRNA thiolase (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.44 | NIAGMN_24290 | ycfH | metal-dependent hydrolase | 0.70 | NIAGMN_26325 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 80 |
| Escherichia coli ECRC100 | 0.44 | OKFHMN_03540 | ycfH | metal-dependent hydrolase | 0.70 | OKFHMN_02155 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.44 | OHPLBJKB_02566 | | putative metal-dependent hydrolase YcfH | 0.70 | OHPLBJKB_02337 | | tRNA-cytidine(32) 2-sulfurtransferase | low | > 74 |
| Escherichia coli ECRC99 | 0.44 | KEDOAH_24215 | ycfH | metal-dependent hydrolase | 0.70 | KEDOAH_26600 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | — | — |
| Escherichia fergusonii Becca | 0.44 | EFB2_02875 | | putative metal-dependent hydrolase YcfH | 0.70 | EFB2_02583 | | tRNA-cytidine(32) 2-sulfurtransferase | low | > 86 |
| Acinetobacter baumannii LAC-4 | 0.44 | RR41_RS12075 | | TatD family hydrolase | 0.66 | RR41_RS04315 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 55 |
| Acinetobacter radioresistens SK82 | 0.44 | MPMX26_01224 | | putative metal-dependent hydrolase YcfH | 0.65 | MPMX26_00810 | | tRNA-cytidine(32) 2-sulfurtransferase | low | > 36 |
| Erwinia amylovora T8 | 0.44 | OLJFJH_15495 | | metal-dependent hydrolase | 0.68 | OLJFJH_13765 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 58 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS16000 | | TatD family hydrolase | 0.64 | ABID97_RS06505 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 91 |
| Variovorax sp. SCN45 | 0.43 | GFF34 | | Uncharacterized metal-dependent hydrolase YcfH | 0.65 | GFF7310 | | tRNA-(cytosine32)-2-thiocytidine synthetase TtcA | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.42 | GFF4665 | | Putative deoxyribonuclease YcfH | 0.63 | GFF1658 | | tRNA(Cytosine32)-2-thiocytidine synthetase | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.41 | Ac3H11_2488 | | Putative deoxyribonuclease YcfH | 0.66 | Ac3H11_1817 | | tRNA(Cytosine32)-2-thiocytidine synthetase | low | > 79 |
| Sinorhizobium meliloti 1021 | 0.40 | SMc01193 | | hypothetical protein | 0.48 | SMc00534 | | C32 tRNA thiolase | low | > 103 |
| Phaeobacter inhibens DSM 17395 | 0.40 | PGA1_c07990 | | putative hydrolase, TatD family | 0.48 | PGA1_c02110 | | tRNA 2-thiocytidine biosynthesis protein TtcA | low | > 62 |
| Agrobacterium fabrum C58 | 0.37 | Atu1495 | | hypothetical protein | 0.47 | Atu1858 | | hypothetical protein | low | > 89 |
| Rhizobium sp. OAE497 | 0.35 | ABIE40_RS09480 | | TatD family hydrolase | 0.48 | ABIE40_RS10230 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 107 |
| Dinoroseobacter shibae DFL-12 | 0.35 | Dshi_0920 | | hydrolase, TatD family (RefSeq) | 0.47 | Dshi_0330 | | PP-loop domain protein (RefSeq) | low | > 64 |
| Fusobacterium nucleatum SB010 | 0.31 | HUW76_08855 | | TatD family hydrolase | 0.27 | HUW76_05920 | | tRNA 2-thiocytidine(32) synthetase TtcA | low | > 35 |
| Marinobacter adhaerens HP15 | 0.30 | HP15_3420 | | hydrolase, TatD family | 0.69 | HP15_2116 | | PP-loop domain protein | low | > 73 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.27 | DVU3202 | | hydrolase, TatD family (TIGR) | 0.19 | DVU3241 | | conserved hypothetical protein (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.27 | DvMF_2230 | | hydrolase, TatD family (RefSeq) | 0.19 | DvMF_2293 | | PP-loop domain protein (RefSeq) | low | > 51 |
Not shown: 25 genomes with orthologs for Pf6N2E2_5960 only; 13 genomes with orthologs for Pf6N2E2_5711 only