Conservation of cofitness between PP_4546 and PP_5294 in Pseudomonas putida KT2440

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4546 ATP-dependent helicase HrpA 1.0 PP_5294 Ribonuclease PH 0.42 18
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_3831 ATP-dependent helicase HrpA 0.95 Psyr_0213 RNAse PH low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_3831 ATP-dependent helicase HrpA 0.95 Psyr_0213 RNAse PH low > 86
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_2694 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.95 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) 0.30 18
Pseudomonas simiae WCS417 0.85 PS417_20575 ATP-dependent helicase HrpA 0.94 PS417_27810 ribonuclease PH 0.27 20
Pseudomonas sp. RS175 0.85 PFR28_00739 hypothetical protein 0.94 PFR28_04420 Ribonuclease PH low > 88
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_18225 ATP-dependent RNA helicase HrpA 0.94 AO353_09260 ribonuclease PH 0.23 95
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_04280 ATP-dependent RNA helicase HrpA 0.95 AO356_12500 ribonuclease PH low > 104
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_4467 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.93 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) low > 87
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.94 PFLU_RS29490 ribonuclease PH low > 109
Pseudomonas fluorescens SBW25 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.94 PFLU_RS29490 ribonuclease PH low > 109
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.94 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) 0.29 73
Pseudomonas sp. S08-1 0.80 OH686_05730 RNA helicase HrpA 0.88 OH686_13570 ribonuclease PH low > 80
Pseudomonas stutzeri RCH2 0.78 Psest_1339 ATP-dependent helicase HrpA 0.89 Psest_3813 ribonuclease PH low > 67
Marinobacter adhaerens HP15 0.48 HP15_1863 RNA helicase, ATP-dependent DEAH box, HrpA type 0.69 HP15_300 ribonuclease PH low > 73
Shewanella loihica PV-4 0.48 Shew_1767 ATP-dependent helicase HrpA (RefSeq) 0.65 Shew_3488 ribonuclease PH (RefSeq) low > 60
Shewanella sp. ANA-3 0.48 Shewana3_1897 ATP-dependent helicase HrpA (RefSeq) 0.65 Shewana3_3777 RNAse PH (RefSeq) low > 73
Shewanella oneidensis MR-1 0.48 SO2229 hrpA ATP-dependent helicase HrpA (NCBI ptt file) 0.65 SO4256 rph ribonuclease PH (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.48 DDA3937_RS12270 ATP-dependent RNA helicase HrpA 0.69 DDA3937_RS20540 ribonuclease PH low > 74
Serratia liquefaciens MT49 0.48 IAI46_13330 ATP-dependent RNA helicase HrpA 0.67 IAI46_24850 ribonuclease PH low > 86
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_06950 ATP-dependent RNA helicase HrpA 0.63 CSW01_01115 ribonuclease PH low > 62
Pectobacterium carotovorum WPP14 0.47 HER17_RS09660 ATP-dependent RNA helicase HrpA 0.65 HER17_RS20855 ribonuclease PH low > 75
Dickeya dianthicola ME23 0.47 DZA65_RS12800 ATP-dependent RNA helicase HrpA 0.68 DZA65_RS00730 ribonuclease PH low > 75
Dickeya dianthicola 67-19 0.47 HGI48_RS12360 ATP-dependent RNA helicase HrpA 0.68 HGI48_RS00675 ribonuclease PH low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF2632 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.66 GFF366 Ribonuclease PH (EC 2.7.7.56) low > 78
Escherichia fergusonii Becca 0.47 EFB2_02565 hypothetical protein 0.66 EFB2_00170 Ribonuclease PH low > 86
Escherichia coli Nissle 1917 0.47 ECOLIN_RS08180 ATP-dependent RNA helicase HrpA 0.66 ECOLIN_RS20755 ribonuclease PH — —
Escherichia coli ECRC99 0.47 KEDOAH_26710 hrpA ATP-dependent RNA helicase HrpA 0.66 KEDOAH_12555 rph ribonuclease PH — —
Escherichia coli ECRC101 0.47 MCAODC_16205 hrpA ATP-dependent RNA helicase HrpA 0.66 MCAODC_06100 rph ribonuclease PH — —
Escherichia coli ECRC98 0.47 JDDGAC_04220 hrpA ATP-dependent RNA helicase HrpA 0.66 JDDGAC_19215 rph ribonuclease PH — —
Escherichia coli ECRC102 0.47 NIAGMN_25865 hrpA ATP-dependent RNA helicase HrpA 0.66 NIAGMN_13350 rph ribonuclease PH — —
Escherichia coli ECRC101 0.47 OKFHMN_01730 hrpA ATP-dependent RNA helicase HrpA 0.66 OKFHMN_15590 rph ribonuclease PH — —
Escherichia coli BL21 0.47 ECD_01368 putative ATP-dependent helicase 0.66 ECD_03500 ribonuclease PH low > 60
Shewanella amazonensis SB2B 0.47 Sama_1619 ATP-dependent helicase HrpA (RefSeq) 0.66 Sama_0320 tRNA nucleotidyltransferase (RefSeq) low > 62
Escherichia coli ECOR38 0.47 HEPCGN_26110 hrpA ATP-dependent RNA helicase HrpA 0.66 HEPCGN_14410 rph ribonuclease PH low > 85
Escherichia coli ECRC62 0.47 BNILDI_17845 hrpA ATP-dependent RNA helicase HrpA 0.66 BNILDI_04045 rph ribonuclease PH — —
Escherichia coli ECOR27 0.47 NOLOHH_19390 hrpA ATP-dependent RNA helicase HrpA 0.66 NOLOHH_07470 rph ribonuclease PH — —
Enterobacter asburiae PDN3 0.47 EX28DRAFT_1357 RNA helicase HrpA 0.65 EX28DRAFT_3893 ribonuclease PH low > 76
Escherichia coli BW25113 0.47 b1413 hrpA ATP-dependent helicase (RefSeq) 0.64 b3643 rph ribonuclease PH (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_02301 hypothetical protein 0.66 OHPLBJKB_00059 Ribonuclease PH low > 73
Enterobacter sp. TBS_079 0.47 MPMX20_02189 hypothetical protein 0.65 MPMX20_00092 Ribonuclease PH low > 85
Klebsiella michiganensis M5al 0.46 BWI76_RS13165 ATP-dependent RNA helicase HrpA 0.65 BWI76_RS27390 ribonuclease PH low > 92
Pantoea sp. MT58 0.46 IAI47_09520 ATP-dependent RNA helicase HrpA 0.65 IAI47_00595 ribonuclease PH low > 76
Rahnella sp. WP5 0.46 EX31_RS06495 ATP-dependent RNA helicase HrpA 0.66 EX31_RS14505 ribonuclease PH low > 89
Alteromonas macleodii MIT1002 0.45 MIT1002_01685 ATP-dependent RNA helicase HrpB 0.67 MIT1002_04071 Ribonuclease PH low > 70
Erwinia tracheiphila SCR3 0.45 LU632_RS12630 hrpA ATP-dependent RNA helicase HrpA 0.64 LU632_RS22020 rph ribonuclease PH low > 74
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS13030 ATP-dependent helicase 0.60 RR42_RS04890 ribonuclease PH 0.35 70
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11020 ATP-dependent RNA helicase HrpA 0.61 ABZR87_RS15255 ribonuclease PH 0.50 8
Ralstonia solanacearum PSI07 0.41 RPSI07_RS17865 ATP-dependent RNA helicase HrpA 0.61 RPSI07_RS13840 ribonuclease PH — —
Ralstonia solanacearum GMI1000 0.41 RS_RS06270 ATP-dependent RNA helicase HrpA 0.61 RS_RS10830 ribonuclease PH — —
Ralstonia solanacearum UW163 0.41 UW163_RS12950 ATP-dependent RNA helicase HrpA 0.61 UW163_RS10375 ribonuclease PH — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS15490 ATP-dependent RNA helicase HrpA 0.61 RALBFv3_RS03345 ribonuclease PH 0.48 56
Dechlorosoma suillum PS 0.41 Dsui_1373 ATP-dependent helicase HrpA 0.63 Dsui_0494 ribonuclease PH low > 51
Castellaniella sp019104865 MT123 0.40 ABCV34_RS02420 ATP-dependent RNA helicase HrpA 0.56 ABCV34_RS03515 ribonuclease PH low > 48
Paraburkholderia graminis OAS925 0.40 ABIE53_002813 ATP-dependent helicase HrpA 0.63 ABIE53_003234 ribonuclease PH low > 113
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_1779 ATP-dependent helicase HrpA 0.69 B158DRAFT_0588 ribonuclease PH 0.81 1
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS17315 ATP-dependent helicase 0.64 HSERO_RS10655 ribonuclease PH low > 78
Variovorax sp. OAS795 0.39 ABID97_RS16615 ATP-dependent RNA helicase HrpA 0.59 ABID97_RS23640 ribonuclease PH low > 91
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS19720 ATP-dependent RNA helicase HrpA 0.63 ABZR86_RS11900 ribonuclease PH low > 74
Acidovorax sp. GW101-3H11 0.38 Ac3H11_896 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.55 Ac3H11_3670 Ribonuclease PH (EC 2.7.7.56) 0.35 41
Variovorax sp. SCN45 0.38 GFF247 ATP-dependent helicase HrpA 0.59 GFF2381 Ribonuclease PH (EC 2.7.7.56) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF4301 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.61 GFF3254 Ribonuclease PH (EC 2.7.7.56) low > 90
Acinetobacter radioresistens SK82 0.37 MPMX26_02008 hypothetical protein 0.65 MPMX26_00040 Ribonuclease PH low > 36
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS05625 ATP-dependent RNA helicase HrpA 0.64 QEN71_RS03645 ribonuclease PH low > 153
Lysobacter sp. OAE881 0.37 ABIE51_RS05155 ATP-dependent RNA helicase HrpA 0.61 ABIE51_RS17285 ribonuclease PH low > 62
Rhodanobacter denitrificans MT42 0.36 LRK55_RS12420 ATP-dependent RNA helicase HrpA 0.60 LRK55_RS11470 ribonuclease PH low > 63
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS12715 ATP-dependent RNA helicase HrpA 0.60 LRK54_RS11745 ribonuclease PH 0.47 6
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_02155 hrpA ATP-dependent RNA helicase HrpA 0.60 OKGIIK_12150 rph ribonuclease PH — —
Bifidobacterium breve UCC2003 0.32 BBR_RS17010 DUF3418 domain-containing protein 0.51 BBR_RS12405 ribonuclease PH low > 34

Not shown: 0 genomes with orthologs for PP_4546 only; 20 genomes with orthologs for PP_5294 only