| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4693 | | RNA polymerase-binding transcription factor DksA | 1.0 | PP_4700 | | pantothenate synthetase | 0.48 | 9 |
| Pseudomonas fluorescens GW456-L13 | 0.78 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | 0.82 | PfGW456L13_1520 | | Pantoate--beta-alanine ligase (EC 6.3.2.1) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.78 | PS417_23875 | | molecular chaperone DnaK | 0.80 | PS417_23915 | | pantoate--beta-alanine ligase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.77 | AO356_16095 | | molecular chaperone DnaK | 0.83 | AO356_16055 | | pantoate--beta-alanine ligase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.80 | PFLU_RS25755 | | pantoate--beta-alanine ligase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.80 | PFLU_RS25755 | | pantoate--beta-alanine ligase | low | > 109 |
| Pseudomonas sp. RS175 | 0.77 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.84 | PFR28_03722 | | Pantothenate synthetase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.76 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | 0.81 | Pf1N1B4_2853 | | Pantoate--beta-alanine ligase (EC 6.3.2.1) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.76 | AO353_14420 | | molecular chaperone DnaK | 0.83 | AO353_14380 | | pantoate--beta-alanine ligase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.78 | Psyr_0827 | | pantothenate synthetase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.78 | Psyr_0827 | | pantothenate synthetase | low | > 86 |
| Pseudomonas sp. S08-1 | 0.71 | OH686_17280 | | RNA polymerase-binding protein DksA | 0.78 | OH686_17240 | | pantoate--beta-alanine ligase | — | — |
| Pseudomonas stutzeri RCH2 | 0.69 | Psest_1003 | | RNA polymerase-binding protein DksA | 0.71 | Psest_0995 | | pantoate--beta-alanine ligase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.68 | Pf6N2E2_5160 | | C4-type zinc finger protein, DksA/TraR family | 0.83 | Pf6N2E2_5152 | | Pantoate--beta-alanine ligase (EC 6.3.2.1) | — | — |
| Serratia liquefaciens MT49 | 0.65 | IAI46_21210 | | RNA polymerase-binding protein DksA | 0.53 | IAI46_21245 | | pantoate--beta-alanine ligase | low | > 86 |
| Kangiella aquimarina DSM 16071 | 0.65 | B158DRAFT_0056 | | transcriptional regulator, TraR/DksA family | 0.51 | B158DRAFT_0062 | | pantoate--beta-alanine ligase | — | — |
| Pectobacterium carotovorum WPP14 | 0.65 | HER17_RS05580 | | RNA polymerase-binding protein DksA | 0.51 | HER17_RS05555 | | pantoate--beta-alanine ligase | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.64 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | 0.52 | OHPLBJKB_03528 | | Pantothenate synthetase | low | > 73 |
| Escherichia coli ECRC101 | 0.64 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | 0.52 | MCAODC_00920 | panC | pantoate--beta-alanine ligase | — | — |
| Erwinia tracheiphila SCR3 | 0.64 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | 0.50 | LU632_RS20105 | panC | pantoate--beta-alanine ligase | — | — |
| Escherichia coli ECRC101 | 0.64 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | 0.52 | OKFHMN_10405 | panC | pantoate--beta-alanine ligase | — | — |
| Enterobacter asburiae PDN3 | 0.64 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | 0.48 | EX28DRAFT_3729 | | pantoate--beta-alanine ligase | — | — |
| Dickeya dadantii 3937 | 0.64 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | 0.51 | DDA3937_RS15960 | | pantoate--beta-alanine ligase | — | — |
| Escherichia coli ECRC99 | 0.64 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | 0.52 | KEDOAH_17750 | panC | pantoate--beta-alanine ligase | — | — |
| Escherichia coli ECRC62 | 0.64 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | 0.52 | BNILDI_08920 | panC | pantoate--beta-alanine ligase | — | — |
| Escherichia fergusonii Becca | 0.64 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | 0.53 | EFB2_03911 | | Pantothenate synthetase | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.64 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | 0.51 | GFF92 | | Pantoate--beta-alanine ligase (EC 6.3.2.1) | low | > 78 |
| Escherichia coli ECOR27 | 0.64 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | 0.52 | NOLOHH_02750 | panC | pantoate--beta-alanine ligase | — | — |
| Escherichia coli ECRC102 | 0.64 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | 0.52 | NIAGMN_08255 | panC | pantoate--beta-alanine ligase | — | — |
| Escherichia coli BW25113 | 0.64 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | 0.52 | b0133 | panC | pantoate--beta-alanine ligase (NCBI) | low | > 76 |
| Enterobacter sp. TBS_079 | 0.64 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | 0.47 | MPMX20_00826 | | Pantothenate synthetase | low | > 85 |
| Escherichia coli ECRC98 | 0.64 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | 0.52 | JDDGAC_14000 | panC | pantoate--beta-alanine ligase | — | — |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | 0.52 | HEPCGN_08380 | panC | pantoate--beta-alanine ligase | low | > 85 |
| Escherichia coli BL21 | 0.64 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | 0.52 | ECD_00132 | | pantothenate synthetase | — | — |
| Rahnella sp. WP5 | 0.64 | EX31_RS03250 | | RNA polymerase-binding protein DksA | 0.49 | EX31_RS03285 | | pantoate--beta-alanine ligase | low | > 89 |
| Dickeya dianthicola ME23 | 0.64 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | 0.51 | DZA65_RS17160 | | pantoate--beta-alanine ligase | — | — |
| Dickeya dianthicola 67-19 | 0.64 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | 0.50 | HGI48_RS16075 | | pantoate--beta-alanine ligase | low | > 71 |
| Klebsiella michiganensis M5al | 0.64 | BWI76_RS05015 | | transcriptional regulator | 0.51 | BWI76_RS04990 | | pantoate--beta-alanine ligase | low | > 92 |
| Vibrio cholerae E7946 ATCC 55056 | 0.64 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 0.50 | CSW01_03130 | | pantoate--beta-alanine ligase | — | — |
| Shewanella amazonensis SB2B | 0.63 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.55 | Sama_0775 | panC | pantoate--beta-alanine ligase (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.63 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.53 | Shew_3134 | | pantoate--beta-alanine ligase (RefSeq) | — | — |
| Pantoea sp. MT58 | 0.63 | IAI47_15635 | | RNA polymerase-binding protein DksA | 0.50 | IAI47_15660 | | pantoate--beta-alanine ligase | low | > 76 |
| Shewanella sp. ANA-3 | 0.60 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.54 | Shewana3_3409 | panC | pantoate--beta-alanine ligase (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.60 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | 0.54 | SO0869 | panC | pantoate--beta-alanine ligase (NCBI ptt file) | — | — |
| Marinobacter adhaerens HP15 | 0.60 | HP15_332 | | transcriptional regulator, TraR/DksA family | 0.63 | HP15_323 | | pantothenate synthetase | — | — |
| Alteromonas macleodii MIT1002 | 0.59 | MIT1002_03690 | | DnaK suppressor protein | 0.54 | MIT1002_03695 | | Pantothenate synthetase | — | — |
| Dechlorosoma suillum PS | 0.54 | Dsui_2717 | | RNA polymerase-binding protein DksA | 0.45 | Dsui_1470 | | pantoate--beta-alanine ligase | — | — |
| Rhizobium sp. OAE497 | 0.40 | ABIE40_RS10345 | | RNA polymerase-binding protein DksA | 0.42 | ABIE40_RS09460 | | pantoate--beta-alanine ligase | low | > 107 |
| Agrobacterium fabrum C58 | 0.38 | Atu1359 | | dnaK deletion suppressor protein | 0.43 | Atu3482 | | pantoate--beta-alanine ligase | 0.42 | 61 |
| Sinorhizobium meliloti 1021 | 0.38 | SMc00469 | | DnaK suppressor protein | 0.44 | SMc01880 | | pantoate--beta-alanine ligase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.37 | CCNA_02663 | | DnaK suppressor protein DksA | 0.43 | CCNA_02247 | | pantoate-beta-alanine ligase | — | — |
| Caulobacter crescentus NA1000 | 0.37 | CCNA_02663 | | DnaK suppressor protein DksA | 0.43 | CCNA_02247 | | pantoate-beta-alanine ligase | — | — |
| Azospirillum brasilense Sp245 | 0.37 | AZOBR_RS11245 | | molecular chaperone DnaK | 0.45 | AZOBR_RS09715 | | pantoate--beta-alanine ligase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.36 | Dshi_1884 | | transcriptional regulator, TraR/DksA family (RefSeq) | 0.43 | Dshi_2952 | | pantoate--beta-alanine ligase (RefSeq) | — | — |
| Rhodospirillum rubrum S1H | 0.36 | Rru_A2847 | | Transcriptional regulators, TraR/DksA family (NCBI) | 0.46 | Rru_A3320 | | Cytidyltransferase-related (NCBI) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.36 | TX73_020255 | | RNA polymerase-binding protein DksA | 0.40 | TX73_016310 | | pantoate--beta-alanine ligase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.36 | AMB_RS19350 | | RNA polymerase-binding protein DksA | 0.50 | AMB_RS22115 | | pantoate--beta-alanine ligase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.36 | A4249_RS08530 | | RNA polymerase-binding protein DksA | 0.43 | A4249_RS06825 | | pantoate--beta-alanine ligase | — | — |
| Azospirillum sp. SherDot2 | 0.36 | MPMX19_01492 | | RNA polymerase-binding transcription factor DksA | 0.40 | MPMX19_04465 | | Pantothenate synthetase | low | > 112 |
| Phaeobacter inhibens DSM 17395 | 0.35 | PGA1_c11040 | | dnaK suppressor protein DksA | 0.40 | PGA1_c32040 | | pantothenate synthetase PanC | — | — |
| Ralstonia solanacearum PSI07 | 0.35 | RPSI07_RS23720 | | RNA polymerase-binding protein DksA | 0.43 | RPSI07_RS12935 | | pantoate--beta-alanine ligase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.35 | ABZR87_RS05100 | | RNA polymerase-binding protein DksA | 0.43 | ABZR87_RS00030 | | pantoate--beta-alanine ligase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.34 | RR42_RS01030 | | molecular chaperone DnaK | 0.43 | RR42_RS16055 | | pantothenate synthetase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.34 | HSERO_RS00840 | | molecular chaperone DnaK | 0.44 | HSERO_RS15520 | | pantoate--beta-alanine ligase | — | — |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS13460 | | RNA polymerase-binding protein DksA | 0.43 | ABIE41_RS14875 | | pantoate--beta-alanine ligase | low | > 77 |
| Ralstonia solanacearum UW163 | 0.33 | UW163_RS03935 | | RNA polymerase-binding protein DksA | 0.44 | UW163_RS09235 | | pantoate--beta-alanine ligase | — | — |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | 0.41 | ABCV34_RS14585 | | pantoate--beta-alanine ligase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.33 | RALBFv3_RS09645 | | RNA polymerase-binding protein DksA | 0.44 | RALBFv3_RS04435 | | pantoate--beta-alanine ligase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS00340 | | RNA polymerase-binding protein DksA | 0.43 | QEN71_RS25065 | | pantoate--beta-alanine ligase | — | — |
| Ralstonia solanacearum GMI1000 | 0.33 | RS_RS00230 | | RNA polymerase-binding protein DksA | 0.44 | RS_RS11985 | | pantoate--beta-alanine ligase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.31 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | 0.46 | Ga0059261_2453 | | pantoate--beta-alanine ligase | — | — |
Not shown: 1 genomes with orthologs for PP_4693 only; 27 genomes with orthologs for PP_4700 only