Conservation of cofitness between PP_1860 and PP_1906 in Pseudomonas putida KT2440

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1860 Organic hydroperoxide resistance transcriptional regulator 1.0 PP_1906 ribosomal large subunit pseudouridine synthase C 0.34 16
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_19090 MarR family transcriptional regulator 0.87 AO353_01405 23S rRNA pseudouridylate synthase low > 101
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_275 Organic hydroperoxide resistance transcriptional regulator 0.88 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2C3 0.76 AO356_03145 MarR family transcriptional regulator 0.89 AO356_20125 23S rRNA pseudouridylate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.76 PFLU_RS08445 MarR family transcriptional regulator 0.88 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.33 71
Pseudomonas fluorescens FW300-N2E2 0.76 Pf6N2E2_2458 Organic hydroperoxide resistance transcriptional regulator 0.89 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Pseudomonas fluorescens SBW25 0.76 PFLU_RS08445 MarR family transcriptional regulator 0.88 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 69
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_2237 Organic hydroperoxide resistance transcriptional regulator 0.86 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 87
Pseudomonas sp. RS175 0.75 PFR28_00973 Organic hydroperoxide resistance transcriptional regulator 0.90 PFR28_03018 Ribosomal large subunit pseudouridine synthase C — —
Pseudomonas simiae WCS417 0.73 PS417_08495 MarR family transcriptional regulator 0.88 PS417_21480 23S rRNA pseudouridylate synthase — —
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_3626 transcriptional regulator, MarR family 0.90 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_3626 transcriptional regulator, MarR family 0.90 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas sp. S08-1 0.68 OH686_17660 Organic hydroperoxide resistance transcriptional regulator 0.86 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase — —
Rhizobium sp. OAE497 0.55 ABIE40_RS13610 MarR family transcriptional regulator 0.30 ABIE40_RS09915 RluA family pseudouridine synthase low > 107
Acidovorax sp. GW101-3H11 0.53 Ac3H11_4655 Organic hydroperoxide resistance transcriptional regulator 0.42 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 79
Marinobacter adhaerens HP15 0.52 HP15_2792 transcriptional regulator MarR family protein 0.51 HP15_2221 pseudouridine synthase, RluA family low > 73
Pectobacterium carotovorum WPP14 0.52 HER17_RS06400 MarR family transcriptional regulator 0.56 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Dickeya dianthicola ME23 0.51 DZA65_RS19880 MarR family transcriptional regulator 0.53 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS18745 MarR family transcriptional regulator 0.53 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Dickeya dadantii 3937 0.50 DDA3937_RS18760 MarR family transcriptional regulator 0.54 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Dechlorosoma suillum PS 0.50 Dsui_2172 transcriptional regulator 0.44 Dsui_2437 pseudouridine synthase, RluA family low > 51
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS33655 MarR family transcriptional regulator 0.43 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C low > 109
Enterobacter sp. TBS_079 0.50 MPMX20_00654 Organic hydroperoxide resistance transcriptional regulator 0.56 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF354 Organic hydroperoxide resistance transcriptional regulator 0.41 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 90
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_06031 transcriptional regulator, MarR family 0.44 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase low > 103
Ralstonia solanacearum PSI07 0.49 RPSI07_RS05140 MarR family transcriptional regulator 0.44 RPSI07_RS19085 RluA family pseudouridine synthase low > 81
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.339.1 Organic hydroperoxide resistance transcriptional regulator 0.44 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 74
Lysobacter sp. OAE881 0.49 ABIE51_RS14315 MarR family transcriptional regulator 0.45 ABIE51_RS11800 RluA family pseudouridine synthase low > 62
Ralstonia solanacearum UW163 0.48 UW163_RS20715 MarR family transcriptional regulator 0.43 UW163_RS11840 RluA family pseudouridine synthase — —
Ralstonia solanacearum GMI1000 0.48 RS_RS22455 MarR family transcriptional regulator 0.44 RS_RS05155 RluA family pseudouridine synthase low > 80
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS22585 MarR family transcriptional regulator 0.44 RR42_RS14155 pseudouridine synthase low > 128
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS18415 MarR family transcriptional regulator 0.43 RALBFv3_RS14375 RluA family pseudouridine synthase low > 76
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS17840 MarR family transcriptional regulator 0.44 QEN71_RS04500 RluA family pseudouridine synthase 0.32 150
Variovorax sp. OAS795 0.47 ABID97_RS00925 MarR family transcriptional regulator 0.43 ABID97_RS08250 RluA family pseudouridine synthase low > 91
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS15365 MarR family transcriptional regulator 0.46 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C low > 78
Castellaniella sp019104865 MT123 0.47 ABCV34_RS12000 MarR family transcriptional regulator 0.40 ABCV34_RS08415 RluA family pseudouridine synthase low > 48
Erwinia tracheiphila SCR3 0.47 LU632_RS00235 MarR family transcriptional regulator 0.56 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Rahnella sp. WP5 0.47 EX31_RS05595 MarR family transcriptional regulator 0.56 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 89
Serratia liquefaciens MT49 0.47 IAI46_00420 MarR family transcriptional regulator 0.54 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Variovorax sp. SCN45 0.46 GFF3570 Organic hydroperoxide resistance transcriptional regulator 0.43 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) low > 127
Pantoea sp. MT58 0.46 IAI47_18675 MarR family transcriptional regulator 0.58 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 76
Azospirillum brasilense Sp245 0.46 AZOBR_RS23440 MarR family transcriptional regulator 0.22 AZOBR_RS06905 pseudouridine synthase 0.38 21
Enterobacter asburiae PDN3 0.46 EX28DRAFT_3564 Transcriptional regulators 0.55 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS03665 MarR family transcriptional regulator 0.44 ABZR87_RS10090 RluA family pseudouridine synthase low > 80
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_00962 MarR-family transcriptional regulator 0.22 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 67
Caulobacter crescentus NA1000 0.45 CCNA_00962 MarR-family transcriptional regulator 0.22 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 66
Shewanella amazonensis SB2B 0.45 Sama_0628 MarR family transcriptional regulator (RefSeq) 0.55 Sama_1988 pseudouridylate synthase (RefSeq) low > 62
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS15735 MarR family transcriptional regulator 0.45 LRK54_RS17895 RluA family pseudouridine synthase low > 59
Azospirillum sp. SherDot2 0.44 MPMX19_00748 Organic hydroperoxide resistance transcriptional regulator 0.25 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C low > 112
Rhodanobacter denitrificans MT42 0.44 LRK55_RS15485 MarR family transcriptional regulator 0.46 LRK55_RS17750 RluA family pseudouridine synthase low > 63
Agrobacterium fabrum C58 0.44 Atu5064 MarR family transcriptional regulator 0.30 Atu1471 ribosomal large subunit pseudouridine synthase C — —
Shewanella sp. ANA-3 0.43 Shewana3_3311 MarR family transcriptional regulator (RefSeq) 0.53 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) low > 73
Sinorhizobium meliloti 1021 0.43 SMc01945 transcriptional regulator 0.28 SMc01275 ribosomal large subunit pseudouridine synthase C protein — —
Sphingomonas koreensis DSMZ 15582 0.42 Ga0059261_0852 Transcriptional regulators 0.24 Ga0059261_1033 pseudouridine synthase, RluA family — —
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS13500 MarR family transcriptional regulator 0.24 A4249_RS07865 RluA family pseudouridine synthase — —
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_19135 MarR family transcriptional regulator 0.51 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 62
Phaeobacter inhibens DSM 17395 0.37 PGA1_c34090 organic hydroperoxide resistance transcriptional regulator 0.25 PGA1_c01950 ribosomal large subunit pseudouridine synthase C — —
Alteromonas macleodii MIT1002 0.33 MIT1002_00888 Organic hydroperoxide resistance transcriptional regulator 0.56 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C low > 70

Not shown: 4 genomes with orthologs for PP_1860 only; 27 genomes with orthologs for PP_1906 only