Conservation of cofitness between PP_1326 and PP_0405 in Pseudomonas putida KT2440

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase 1.0 PP_0405 conserved protein of unknown function 0.60 10
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_15290 methyltransferase 0.76 AO353_07295 aminoglycoside phosphotransferase low > 101
Pseudomonas sp. RS175 0.84 PFR28_03597 Ribosomal RNA small subunit methyltransferase I 0.74 PFR28_04060 N-acetylmuramate/N-acetylglucosamine kinase low > 88
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_5346 rRNA small subunit methyltransferase I 0.75 Pf6N2E2_4809 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_4112 Protein of unknown function UPF0011 0.75 Psyr_4623 Aminoglycoside phosphotransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_4112 Protein of unknown function UPF0011 0.75 Psyr_4623 Aminoglycoside phosphotransferase low > 86
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_17110 methyltransferase 0.75 AO356_14355 aminoglycoside phosphotransferase low > 104
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_953 rRNA small subunit methyltransferase I 0.65 Pf1N1B4_2532 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases — —
Pseudomonas fluorescens SBW25 0.83 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.76 PFLU_RS27445 phosphotransferase low > 109
Pseudomonas simiae WCS417 0.83 PS417_04590 methyltransferase 0.72 PS417_25790 aminoglycoside phosphotransferase low > 88
Pseudomonas fluorescens SBW25-INTG 0.83 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.76 PFLU_RS27445 phosphotransferase low > 109
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_1643 rRNA small subunit methyltransferase I 0.76 PfGW456L13_1204 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases low > 87
Pseudomonas stutzeri RCH2 0.77 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.70 Psest_3664 Predicted phosphotransferase related to Ser/Thr protein kinases low > 67
Pseudomonas sp. S08-1 0.76 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.63 OH686_15060 Phosphotransferase low > 80
Shewanella amazonensis SB2B 0.56 Sama_3353 hypothetical protein (RefSeq) 0.31 Sama_2815 phosphotransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.55 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) 0.33 Shew_0883 aminoglycoside phosphotransferase (RefSeq) low > 60
Marinobacter adhaerens HP15 0.54 HP15_554 tetrapyrrole methylase family protein 0.38 HP15_3282 aminoglycoside phosphotransferase low > 73
Shewanella oneidensis MR-1 0.53 SO0301 hypothetical methyltransferase (NCBI ptt file) 0.32 SO3635 hypothetical phosphotransferase (NCBI ptt file) low > 76
Acinetobacter radioresistens SK82 0.52 MPMX26_02282 Ribosomal RNA small subunit methyltransferase I 0.29 MPMX26_01212 N-acetylmuramate/N-acetylglucosamine kinase low > 36
Shewanella sp. ANA-3 0.52 Shewana3_3879 hypothetical protein (RefSeq) 0.31 Shewana3_3205 aminoglycoside phosphotransferase (RefSeq) low > 73
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.38 ABZR86_RS09500 phosphotransferase low > 74
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.37 LRK55_RS02855 phosphotransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.37 LRK54_RS03105 phosphotransferase low > 59
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.4371.1 rRNA small subunit methyltransferase I 0.38 Xcc-8004.1681.1 hypothetical protein low > 74
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.38 OKGIIK_09975 Aminoglycoside phosphotransferase low > 52
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS23345 16S rRNA methyltransferase 0.40 HSERO_RS03520 aminoglycoside phosphotransferase low > 78
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.35 B158DRAFT_0792 Predicted phosphotransferase related to Ser/Thr protein kinases low > 40
Dechlorosoma suillum PS 0.46 Dsui_0251 putative S-adenosylmethionine-dependent methyltransferase, YraL family 0.46 Dsui_1588 aminoglycoside phosphotransferase low > 51
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 QEN71_RS02110 phosphotransferase low > 153
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS01940 16S rRNA methyltransferase 0.40 BPHYT_RS03285 aminoglycoside phosphotransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.40 H281DRAFT_04636 hypothetical protein low > 103
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS19740 16S rRNA methyltransferase 0.44 RR42_RS02765 aminoglycoside phosphotransferase low > 128
Castellaniella sp019104865 MT123 0.37 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.37 ABCV34_RS09505 phosphotransferase low > 48
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.16 CCNA_03649 Ser/Thr kinase-related phosphotransferase low > 67
Caulobacter crescentus NA1000 0.35 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.16 CCNA_03649 Ser/Thr kinase-related phosphotransferase low > 66
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 RALBFv3_RS11735 aminoglycoside phosphotransferase 0.81 20
Paraburkholderia graminis OAS925 0.35 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.39 ABIE53_000796 aminoglycoside/choline kinase family phosphotransferase low > 113
Ralstonia solanacearum UW163 0.35 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 UW163_RS01850 aminoglycoside phosphotransferase — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 RPSI07_RS21480 aminoglycoside phosphotransferase low > 81
Azospirillum sp. SherDot2 0.35 MPMX19_02471 Ribosomal RNA small subunit methyltransferase I 0.18 MPMX19_02725 N-acetylmuramate/N-acetylglucosamine kinase low > 112
Ralstonia solanacearum GMI1000 0.35 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 RS_RS02560 aminoglycoside phosphotransferase low > 80
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 ABZR87_RS07690 aminoglycoside phosphotransferase family protein low > 80
Azospirillum brasilense Sp245 0.34 AZOBR_RS02155 16S rRNA methyltransferase 0.18 AZOBR_RS00580 aminoglycoside phosphotransferase low > 97
Magnetospirillum magneticum AMB-1 0.33 AMB_RS22780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.19 AMB_RS21475 aminoglycoside phosphotransferase — —
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_2755 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.22 Ga0059261_4024 Predicted phosphotransferase related to Ser/Thr protein kinases low > 68
Dinoroseobacter shibae DFL-12 0.31 Dshi_2831 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq) 0.14 Dshi_3435 aminoglycoside phosphotransferase (RefSeq) low > 64
Variovorax sp. SCN45 0.31 GFF3735 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) 0.42 GFF3254 Phosphotransferase involved in threonylcarbamoyladenosine t(6)A37 formation in tRNA low > 127
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS13300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.13 A4249_RS11275 phosphotransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF2715 rRNA small subunit methyltransferase I 0.40 GFF2463 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases low > 90
Phaeobacter inhibens DSM 17395 0.26 PGA1_c26730 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.15 PGA1_c35340 putative phosphotransferase low > 62
Rhodospirillum rubrum S1H 0.26 Rru_A3693 Protein of unknown function UPF0011 (NCBI) 0.22 Rru_A3437 Aminoglycoside phosphotransferase (NCBI) low > 58

Not shown: 37 genomes with orthologs for PP_1326 only; 0 genomes with orthologs for PP_0405 only