Conservation of cofitness between OKFHMN_12000 and OKFHMN_16695 in Escherichia coli ECRC100

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC100 1.0 OKFHMN_12000 tamA autotransporter assembly complex protein TamA 1.0 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.59 3
Escherichia coli ECRC98 1.00 JDDGAC_15640 tamA autotransporter assembly complex protein TamA 1.00 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 86
Escherichia coli ECRC62 1.00 BNILDI_07255 tamA autotransporter assembly complex protein TamA 0.99 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Escherichia coli ECRC99 1.00 KEDOAH_16155 tamA autotransporter assembly complex protein TamA 1.00 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECRC101 1.00 MCAODC_02515 tamA autotransporter assembly complex protein TamA 1.00 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 87
Escherichia coli ECOR27 1.00 NOLOHH_04260 tamA autotransporter assembly complex protein TamA 0.99 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Escherichia coli ECRC102 1.00 NIAGMN_09850 tamA autotransporter assembly complex protein TamA 1.00 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli BW25113 1.00 b4220 ytfM predicted outer membrane protein and surface antigen (NCBI) 0.99 b3465 yhhF predicted methyltransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03813 Translocation and assembly module subunit TamA 0.98 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D low > 73
Escherichia coli ECOR38 1.00 HEPCGN_10200 tamA autotransporter assembly complex protein TamA 0.99 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 87
Escherichia coli BL21 1.00 ECD_04091 translocation and assembly module for autotransporter export, outer membrane subunit 0.99 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent low > 61
Escherichia fergusonii Becca 1.00 EFB2_04309 Translocation and assembly module subunit TamA 0.99 EFB2_00351 Ribosomal RNA small subunit methyltransferase D low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS24510 autotransporter assembly complex protein TamA 0.99 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF874 Uncharacterized protein YtfM precursor 0.83 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) low > 78
Enterobacter sp. TBS_079 0.89 MPMX20_00503 Translocation and assembly module subunit TamA 0.80 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D low > 85
Enterobacter asburiae PDN3 0.87 EX28DRAFT_3406 Outer membrane protein 0.80 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 76
Klebsiella michiganensis M5al 0.83 BWI76_RS02775 outer membrane protein assembly factor 0.81 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase low > 92
Serratia liquefaciens MT49 0.73 IAI46_01770 outer membrane protein assembly factor 0.68 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase low > 86
Pantoea sp. MT58 0.72 IAI47_02715 outer membrane protein assembly factor 0.67 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase low > 76
Pectobacterium carotovorum WPP14 0.72 HER17_RS03980 autotransporter assembly complex protein TamA 0.71 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Rahnella sp. WP5 0.72 EX31_RS08695 outer membrane protein assembly factor 0.70 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase low > 89
Erwinia tracheiphila SCR3 0.72 LU632_RS02105 autotransporter assembly complex protein TamA 0.71 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 74
Dickeya dadantii 3937 0.69 DDA3937_RS17160 outer membrane protein assembly factor 0.66 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase low > 74
Dickeya dianthicola 67-19 0.68 HGI48_RS17215 outer membrane protein assembly factor 0.66 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS18295 outer membrane protein assembly factor 0.66 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Vibrio cholerae E7946 ATCC 55056 0.36 CSW01_12905 outer membrane protein assembly factor 0.56 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 62
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_144 Uncharacterized protein YtfM precursor 0.47 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_01050 hypothetical protein 0.47 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 104
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_3997 Uncharacterized protein YtfM precursor 0.44 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) — —
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_2601 Uncharacterized protein YtfM precursor 0.46 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_27865 hypothetical protein 0.44 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 101
Marinobacter adhaerens HP15 0.28 HP15_2341 surface antigen (D15) 0.47 HP15_3491 conserved hypothetical protein low > 73
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_2478 surface antigen (D15):Surface antigen variable number 0.47 Psyr_4754 16S rRNA m(2)G-966 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_2478 surface antigen (D15):Surface antigen variable number 0.47 Psyr_4754 16S rRNA m(2)G-966 methyltransferase low > 86
Pseudomonas sp. RS175 0.28 PFR28_02752 Translocation and assembly module subunit TamA 0.47 PFR28_04262 Ribosomal RNA small subunit methyltransferase D low > 88
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS18920 outer membrane protein assembly factor 0.44 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 109
Pseudomonas fluorescens SBW25 0.28 PFLU_RS18920 outer membrane protein assembly factor 0.44 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 109
Pseudomonas simiae WCS417 0.27 PS417_16970 membrane protein 0.44 PS417_26825 16S rRNA methyltransferase — —
Pseudomonas putida KT2440 0.27 PP_2892 conserved exported protein of unknown function 0.43 PP_5114 putative adenine methyltransferase low > 96
Pseudomonas stutzeri RCH2 0.27 Psest_2132 Outer membrane protein 0.46 Psest_0255 RNA methyltransferase, RsmD family — —
Shewanella amazonensis SB2B 0.27 Sama_1616 hypothetical protein (RefSeq) 0.49 Sama_3469 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.25 Shew_2172 surface antigen (D15) (RefSeq) 0.47 Shew_3607 putative methyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.25 SO2114 conserved hypothetical protein (NCBI ptt file) 0.51 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.25 Shewana3_1894 surface antigen (D15) (RefSeq) 0.54 Shewana3_3973 putative methyltransferase (RefSeq) low > 73
Dyella japonica UNC79MFTsu3.2 0.21 ABZR86_RS19705 autotransporter assembly complex family protein 0.44 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 74
Rhodanobacter denitrificans MT42 0.21 LRK55_RS12405 autotransporter assembly complex family protein 0.43 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 63
Rhodanobacter denitrificans FW104-10B01 0.20 LRK54_RS12665 autotransporter assembly complex protein TamA 0.43 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 59
Lysobacter sp. OAE881 0.17 ABIE51_RS01235 autotransporter assembly complex family protein 0.37 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 62
Paraburkholderia graminis OAS925 0.12 ABIE53_001263 translocation and assembly module TamA 0.29 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase low > 113
Burkholderia phytofirmans PsJN 0.12 BPHYT_RS04945 membrane protein 0.30 BPHYT_RS02815 methyltransferase low > 109
Paraburkholderia sabiae LMG 24235 0.12 QEN71_RS25050 autotransporter assembly complex family protein 0.31 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 153
Paraburkholderia bryophila 376MFSha3.1 0.11 H281DRAFT_00153 autotransporter secretion outer membrane protein TamA 0.31 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 103
Ralstonia sp. UNC404CL21Col 0.11 ABZR87_RS00015 autotransporter assembly complex family protein 0.28 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Ralstonia solanacearum IBSBF1503 0.11 RALBFv3_RS04420 outer membrane protein assembly factor 0.30 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 76
Ralstonia solanacearum UW163 0.11 UW163_RS09250 outer membrane protein assembly factor 0.30 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD — —
Ralstonia solanacearum GMI1000 0.11 RS_RS11970 outer membrane protein assembly factor 0.29 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Ralstonia solanacearum PSI07 0.11 RPSI07_RS12950 outer membrane protein assembly factor 0.29 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 81
Cupriavidus basilensis FW507-4G11 0.11 RR42_RS16040 membrane protein 0.28 RR42_RS01990 methyltransferase low > 128
Herbaspirillum seropedicae SmR1 0.11 HSERO_RS07725 membrane protein 0.31 HSERO_RS20695 methyltransferase low > 78
Acidovorax sp. GW101-3H11 0.10 Ac3H11_3933 Surface antigen (D15) precursor 0.29 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) — —
Castellaniella sp019104865 MT123 0.08 ABCV34_RS08915 BamA/TamA family outer membrane protein 0.25 ABCV34_RS10145 RsmD family RNA methyltransferase low > 48

Not shown: 3 genomes with orthologs for OKFHMN_12000 only; 25 genomes with orthologs for OKFHMN_16695 only