| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli ECRC98 | 1.0 | JDDGAC_06150 | dauA | C4-dicarboxylic acid transporter DauA | 1.0 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | 2 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_27810 | dauA | C4-dicarboxylic acid transporter DauA | 1.00 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_02481 | | C4-dicarboxylic acid transporter DauA | 1.00 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | low | > 73 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_28425 | dauA | C4-dicarboxylic acid transporter DauA | 1.00 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 80 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_21835 | dauA | C4-dicarboxylic acid transporter DauA | 1.00 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 87 |
| Escherichia coli BW25113 | 1.00 | b1206 | ychM | orf, hypothetical protein (VIMSS) | 1.00 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_25420 | dauA | C4-dicarboxylic acid transporter DauA | 1.00 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli BL21 | 1.00 | ECD_01181 | | C4-dicarboxylic acid transporter | 1.00 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | low | > 61 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_18790 | dauA | C4-dicarboxylic acid transporter DauA | 1.00 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS07295 | | C4-dicarboxylic acid transporter DauA | 1.00 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 55 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_20635 | dauA | C4-dicarboxylic acid transporter DauA | 1.00 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Escherichia fergusonii Becca | 1.00 | EFB2_02721 | | C4-dicarboxylic acid transporter DauA | 1.00 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_24890 | dauA | C4-dicarboxylic acid transporter DauA | 1.00 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 87 |
| Klebsiella michiganensis M5al | 0.92 | BWI76_RS17465 | | C4-dicarboxylic acid transporter DauA | 0.93 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.91 | GFF2781 | | Putative sulfate permease | 0.98 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.89 | MPMX20_02641 | | C4-dicarboxylic acid transporter DauA | 0.89 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | low | > 85 |
| Enterobacter asburiae PDN3 | 0.89 | EX28DRAFT_0825 | | high affinity sulphate transporter 1 | 0.92 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.72 | HER17_RS09730 | | C4-dicarboxylic acid transporter DauA | 0.81 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.65 | 54 |
| Serratia liquefaciens MT49 | 0.70 | IAI46_10305 | | C4-dicarboxylic acid transporter DauA | 0.80 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 86 |
| Rahnella sp. WP5 | 0.69 | EX31_RS07290 | | C4-dicarboxylic acid transporter DauA | 0.82 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 89 |
| Dickeya dadantii 3937 | 0.66 | DDA3937_RS12220 | | C4-dicarboxylic acid transporter DauA | 0.80 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 74 |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS12310 | | C4-dicarboxylic acid transporter DauA | 0.80 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 71 |
| Dickeya dianthicola ME23 | 0.66 | DZA65_RS12750 | | C4-dicarboxylic acid transporter DauA | 0.79 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Shewanella sp. ANA-3 | 0.55 | Shewana3_3154 | | putative sulfate transporter YchM (RefSeq) | 0.65 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | low | > 73 |
| Marinobacter adhaerens HP15 | 0.52 | HP15_3240 | | sulfate permease family protein | 0.51 | HP15_2221 | | pseudouridine synthase, RluA family | low | > 73 |
| Shewanella amazonensis SB2B | 0.48 | Sama_1067 | | putative sulfate transporter YchM (RefSeq) | 0.63 | Sama_1988 | | pseudouridylate synthase (RefSeq) | low | > 62 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_5239 | | Putative sulfate permease | 0.55 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.45 | AO356_16580 | | transporter | 0.55 | AO356_20125 | | 23S rRNA pseudouridylate synthase | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.45 | Pf1N1B4_2936 | | Putative sulfate permease | 0.52 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | — | — |
| Pseudomonas sp. RS175 | 0.44 | PFR28_03638 | | C4-dicarboxylic acid transporter DauA | 0.55 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.43 | Psest_3240 | | Sulfate permease and related transporters (MFS superfamily) | 0.56 | Psest_1680 | | pseudouridine synthase, RluA family | — | — |
| Shewanella loihica PV-4 | 0.40 | Shew_0497 | | putative sulfate transporter YchM (RefSeq) | 0.66 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Magnetospirillum magneticum AMB-1 | 0.37 | AMB_RS18695 | | sodium-independent anion transporter | 0.26 | AMB_RS15620 | | RluA family pseudouridine synthase | low | > 64 |
| Dechlorosoma suillum PS | 0.33 | Dsui_1250 | | sulfate permease-like transporter, MFS superfamily | 0.47 | Dsui_2437 | | pseudouridine synthase, RluA family | low | > 51 |
| Vibrio cholerae E7946 ATCC 55056 | 0.33 | CSW01_14410 | | sodium-independent anion transporter | 0.63 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 62 |
| Pseudomonas fluorescens FW300-N2E3 | 0.30 | AO353_10315 | | sulfate transporter | 0.52 | AO353_01405 | | 23S rRNA pseudouridylate synthase | low | > 101 |
| Cupriavidus basilensis FW507-4G11 | 0.30 | RR42_RS16025 | | sulfate transporter | 0.46 | RR42_RS14155 | | pseudouridine synthase | low | > 128 |
| Azospirillum sp. SherDot2 | 0.29 | MPMX19_02770 | | C4-dicarboxylic acid transporter DauA | 0.24 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | low | > 112 |
| Acidovorax sp. GW101-3H11 | 0.29 | Ac3H11_3820 | | Sulfate permease | 0.43 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | — | — |
| Rhodospirillum rubrum S1H | 0.29 | Rru_A0164 | | Sulfate transporter/antisigma-factor antagonist (NCBI) | 0.26 | Rru_A2659 | | Pseudouridine synthase, RluD (NCBI) | — | — |
| Castellaniella sp019104865 MT123 | 0.28 | ABCV34_RS08985 | | SulP family inorganic anion transporter | 0.42 | ABCV34_RS08415 | | RluA family pseudouridine synthase | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.27 | GFF1211 | | Sulfate permease | 0.43 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 90 |
| Variovorax sp. OAS795 | 0.27 | ABID97_RS07465 | | SulP family inorganic anion transporter | 0.43 | ABID97_RS08250 | | RluA family pseudouridine synthase | low | > 91 |
| Sinorhizobium meliloti 1021 | 0.26 | SMc00476 | | transport transmembrane protein | 0.26 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | low | > 103 |
| Variovorax sp. SCN45 | 0.26 | GFF2584 | | Sulfate permease | 0.44 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | low | > 127 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.19 | H281DRAFT_01715 | | sulfate permease, SulP family | 0.46 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | low | > 103 |
| Alteromonas macleodii MIT1002 | 0.18 | MIT1002_01122 | | Bicarbonate transporter BicA | 0.63 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | low | > 70 |
| Pseudomonas fluorescens SBW25 | 0.18 | PFLU_RS00125 | | SulP family inorganic anion transporter | 0.54 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.18 | PFLU_RS00125 | | SulP family inorganic anion transporter | 0.54 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Pseudomonas simiae WCS417 | 0.17 | PS417_00130 | | SulP family inorganic anion transporter | 0.54 | PS417_21480 | | 23S rRNA pseudouridylate synthase | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.16 | PfGW456L13_643 | | Sulfate permease | 0.51 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 87 |
| Acinetobacter radioresistens SK82 | 0.16 | MPMX26_01076 | | C4-dicarboxylic acid transporter DauA | 0.42 | MPMX26_00317 | | Ribosomal large subunit pseudouridine synthase C | low | > 36 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.15 | A4249_RS00185 | | SulP family inorganic anion transporter | 0.25 | A4249_RS07865 | | RluA family pseudouridine synthase | low | > 48 |
| Burkholderia phytofirmans PsJN | 0.15 | BPHYT_RS22120 | | sulfate transporter | 0.46 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.15 | Psyr_0026 | | Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter | 0.55 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.15 | Psyr_0026 | | Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter | 0.55 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pantoea sp. MT58 | 0.15 | IAI47_21130 | | SulP family inorganic anion transporter | 0.85 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 76 |
| Agrobacterium fabrum C58 | 0.15 | Atu1156 | | sulfate permease | 0.26 | Atu1471 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Pseudomonas sp. S08-1 | 0.14 | OH686_05645 | | Sulfate permease | 0.54 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.14 | HSERO_RS01545 | | sulfate transporter | 0.47 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | low | > 78 |
| Pseudomonas putida KT2440 | 0.14 | PP_4112 | | Sulphate transporter | 0.54 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | low | > 96 |
| Dinoroseobacter shibae DFL-12 | 0.14 | Dshi_2067 | | sulphate transporter (RefSeq) | 0.22 | Dshi_0315 | | pseudouridine synthase, RluA family (RefSeq) | low | > 64 |
| Paraburkholderia sabiae LMG 24235 | 0.14 | QEN71_RS12990 | | SulP family inorganic anion transporter | 0.48 | QEN71_RS04500 | | RluA family pseudouridine synthase | low | > 153 |
| Phaeobacter inhibens DSM 17395 | 0.13 | PGA1_c06390 | | putative sulfate transporter | 0.26 | PGA1_c01950 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Kangiella aquimarina DSM 16071 | 0.13 | B158DRAFT_2337 | | Sulfate permease and related transporters (MFS superfamily) | 0.54 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | low | > 40 |
| Paraburkholderia graminis OAS925 | 0.13 | ABIE53_001581 | | MFS superfamily sulfate permease-like transporter | 0.46 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | low | > 113 |
| Rhizobium sp. OAE497 | 0.13 | ABIE40_RS06660 | | SulP family inorganic anion transporter | 0.26 | ABIE40_RS09915 | | RluA family pseudouridine synthase | low | > 107 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.13 | Xcc-8004.821.1 | | Sulfate permease | 0.42 | Xcc-8004.2616.1 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.12 | ABZR86_RS08195 | | SulP family inorganic anion transporter | 0.41 | ABZR86_RS02725 | | RluA family pseudouridine synthase | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.12 | LU632_RS02400 | | SulP family inorganic anion transporter | 0.85 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 74 |
| Azospirillum brasilense Sp245 | 0.09 | AZOBR_RS27455 | | transporter | 0.23 | AZOBR_RS06905 | | pseudouridine synthase | low | > 97 |
Not shown: 18 genomes with orthologs for JDDGAC_06150 only; 11 genomes with orthologs for JDDGAC_07275 only