| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Serratia liquefaciens MT49 | 1.0 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 1.0 | IAI46_02265 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.61 | 18 |
| Rahnella sp. WP5 | 0.92 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.95 | EX31_RS12775 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.91 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.88 | HER17_RS19520 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
| Dickeya dadantii 3937 | 0.91 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.93 | DDA3937_RS01915 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 74 |
| Dickeya dianthicola 67-19 | 0.90 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.91 | HGI48_RS01890 | | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Dickeya dianthicola ME23 | 0.90 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.91 | DZA65_RS01960 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
| Pantoea sp. MT58 | 0.89 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.93 | IAI47_16870 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 76 |
| Escherichia coli ECRC101 | 0.88 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.89 | MCAODC_02380 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Escherichia coli ECRC99 | 0.88 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.89 | KEDOAH_16280 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Escherichia coli ECRC102 | 0.88 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.89 | NIAGMN_09725 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.88 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.89 | OHPLBJKB_03791 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.44 | 49 |
| Escherichia coli ECRC101 | 0.88 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.89 | OKFHMN_11875 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Escherichia coli BL21 | 0.88 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.89 | ECD_04111 | | enamine/imine deaminase, reaction intermediate detoxification | low | > 60 |
| Escherichia fergusonii Becca | 0.88 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.89 | EFB2_04290 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 86 |
| Escherichia coli ECOR38 | 0.88 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.89 | HEPCGN_10070 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 85 |
| Escherichia coli ECRC98 | 0.88 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.89 | JDDGAC_15515 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Escherichia coli BW25113 | 0.88 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.89 | b4243 | yjgF | orf, hypothetical protein (VIMSS) | — | — |
| Escherichia coli Nissle 1917 | 0.88 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.89 | ECOLIN_RS24615 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 52 |
| Enterobacter sp. TBS_079 | 0.88 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.89 | MPMX20_00542 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 85 |
| Escherichia coli ECRC62 | 0.87 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.89 | BNILDI_07375 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Klebsiella michiganensis M5al | 0.87 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.91 | BWI76_RS02985 | | reactive intermediate/imine deaminase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.87 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.89 | EX28DRAFT_3444 | | reactive intermediate/imine deaminase | low | > 76 |
| Escherichia coli ECOR27 | 0.87 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.89 | NOLOHH_04135 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 57 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.87 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.93 | GFF928 | | Endoribonuclease L-PSP | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.86 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.90 | LU632_RS20960 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.70 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.76 | CSW01_12735 | | RidA family protein | 0.86 | 46 |
| Alteromonas macleodii MIT1002 | 0.66 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | 0.41 | MIT1002_00109 | | Putative reactive intermediate deaminase TdcF | low | > 70 |
| Shewanella sp. ANA-3 | 0.65 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | 0.43 | Shewana3_2971 | | putative endoribonuclease L-PSP (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.64 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | 0.40 | Shew_3500 | | putative endoribonuclease L-PSP (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.62 | Sama_2605 | | pseudouridylate synthase (RefSeq) | 0.42 | Sama_0263 | | YjgF-like protein (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.56 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.42 | AO356_12475 | | reactive intermediate/imine deaminase | low | > 104 |
| Pseudomonas sp. S08-1 | 0.55 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | 0.40 | OH686_13545 | | RidA/YER057c/UK114 superfamily protein | low | > 80 |
| Pseudomonas putida KT2440 | 0.55 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.42 | PP_5303 | | aminoacrylate/iminopropionate hydrolase/deaminase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.55 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.41 | PFLU_RS29515 | | RidA family protein | low | > 109 |
| Pseudomonas sp. RS175 | 0.55 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | 0.42 | PFR28_04425 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 88 |
| Pseudomonas simiae WCS417 | 0.55 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | 0.41 | PS417_27835 | | endoribonuclease | — | — |
| Pseudomonas fluorescens SBW25 | 0.55 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.41 | PFLU_RS29515 | | RidA family protein | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.55 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.44 | AO353_24440 | | reactive intermediate/imine deaminase | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.55 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.42 | Pf6N2E2_4360 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.55 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.42 | PfGW456L13_779 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.54 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.42 | Pf1N1B4_2112 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.43 | Psyr_0208 | | endoribonuclease L-PSP | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.43 | Psyr_0208 | | endoribonuclease L-PSP | low | > 86 |
| Kangiella aquimarina DSM 16071 | 0.54 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | 0.37 | B158DRAFT_0573 | | endoribonuclease L-PSP, putative | low | > 40 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_0709 | | pseudouridine synthase, RluA family | 0.42 | Psest_3818 | | endoribonuclease L-PSP, putative | 0.27 | 28 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.49 | ABIE51_RS17260 | | RidA family protein | low | > 62 |
| Marinobacter adhaerens HP15 | 0.52 | HP15_527 | | pseudouridine synthase, RluA family | 0.43 | HP15_306 | | YjgF-like protein | low | > 73 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.52 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.46 | Xcc-8004.1205.1 | | hypothetical protein | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.51 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.47 | LRK54_RS11800 | | RidA family protein | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.51 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.47 | LRK55_RS11525 | | RidA family protein | 0.72 | 11 |
| Dyella japonica UNC79MFTsu3.2 | 0.50 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.46 | ABZR86_RS11845 | | RidA family protein | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.48 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.46 | OKGIIK_12095 | ridA | reactive intermediate/imine deaminase | 0.65 | 43 |
| Acinetobacter radioresistens SK82 | 0.42 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | 0.39 | MPMX26_02797 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 36 |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS14830 | | RluA family pseudouridine synthase | 0.34 | UW163_RS22060 | | endoribonuclease L-PSP | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | 0.34 | RALBFv3_RS20925 | | endoribonuclease L-PSP | low | > 76 |
| Castellaniella sp019104865 MT123 | 0.34 | ABCV34_RS01885 | | RluA family pseudouridine synthase | 0.39 | ABCV34_RS03565 | | Rid family detoxifying hydrolase | — | — |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.27 | Ac3H11_4555 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | — | — |
| Phaeobacter inhibens DSM 17395 | 0.32 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | 0.23 | PGA1_c12800 | | endoribonuclease-like protein | — | — |
| Fusobacterium nucleatum SB010 | 0.31 | HUW76_08575 | | RluA family pseudouridine synthase | 0.50 | HUW76_10065 | | RidA family protein | low | > 35 |
| Synechococcus elongatus PCC 7942 | 0.30 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | 0.48 | Synpcc7942_0972 | | YjgF-like protein | low | > 38 |
| Phocaeicola dorei CL03T12C01 | 0.29 | ABI39_RS02845 | | RluA family pseudouridine synthase | 0.47 | ABI39_RS14715 | | RidA family protein | low | > 72 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.29 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | 0.52 | BT1336 | | putative translation initiation inhibitor (NCBI ptt file) | low | > 81 |
| Phocaeicola vulgatus CL09T03C04 | 0.29 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | 0.48 | HMPREF1058_RS18400 | | RidA family protein | low | > 67 |
| Bosea sp. OAE506 | 0.29 | ABIE41_RS05635 | | RluA family pseudouridine synthase | 0.22 | ABIE41_RS17300 | | RidA family protein | — | — |
| Bacteroides ovatus ATCC 8483 | 0.29 | BACOVA_03528 | | pseudouridine synthase, RluA family | 0.52 | BACOVA_00589 | | putative endoribonuclease L-PSP | low | > 94 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.29 | Echvi_0642 | | pseudouridine synthase, RluA family | 0.41 | Echvi_1327 | | endoribonuclease L-PSP, putative | low | > 79 |
| Bacteroides stercoris CC31F | 0.28 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | 0.51 | HMPREF1181_RS10885 | | RidA family protein | low | > 56 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.28 | CA264_15205 | | RNA pseudouridine synthase | 0.40 | CA264_17590 | | RidA family protein | low | > 74 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.28 | ABZR88_RS03985 | | RluA family pseudouridine synthase | 0.45 | ABZR88_RS17245 | | RidA family protein | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.27 | CA265_RS14415 | | pseudouridine synthase | 0.41 | CA265_RS22825 | | reactive intermediate/imine deaminase | low | > 88 |
| Parabacteroides merdae CL09T00C40 | 0.27 | HMPREF1078_RS12640 | | RluA family pseudouridine synthase | 0.47 | HMPREF1078_RS02020 | | RidA family protein | low | > 61 |
| Bifidobacterium breve UCC2003 | 0.20 | BBR_RS17135 | | RluA family pseudouridine synthase | 0.34 | BBR_RS12070 | | endoribonuclease L-PSP | low | > 34 |
Not shown: 22 genomes with orthologs for IAI46_03985 only; 6 genomes with orthologs for IAI46_02265 only