Conservation of cofitness between HSERO_RS03475 and HSERO_RS17980 in Herbaspirillum seropedicae SmR1

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03475 NUDIX hydrolase 1.0 HSERO_RS17980 GTP-binding protein 0.37 5
Acidovorax sp. GW101-3H11 0.60 Ac3H11_4361 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.68 Ac3H11_2864 GTP-binding protein TypA/BipA — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS05740 NUDIX hydrolase 0.80 RALBFv3_RS15715 translational GTPase TypA — —
Ralstonia solanacearum UW163 0.59 UW163_RS07885 NUDIX hydrolase 0.80 UW163_RS13160 translational GTPase TypA — —
Ralstonia solanacearum PSI07 0.59 RPSI07_RS11560 NUDIX hydrolase 0.80 RPSI07_RS17640 translational GTPase TypA low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF2602 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.69 GFF4346 GTP-binding protein TypA/BipA low > 90
Paraburkholderia graminis OAS925 0.59 ABIE53_000811 8-oxo-dGTP pyrophosphatase MutT (NUDIX family) 0.79 ABIE53_002454 GTP-binding protein — —
Ralstonia solanacearum GMI1000 0.59 RS_RS13630 NUDIX hydrolase 0.79 RS_RS06495 translational GTPase TypA — —
Variovorax sp. SCN45 0.58 GFF4911 Nudix-like NDP and NTP phosphohydrolase NudJ 0.70 GFF219 GTP-binding protein TypA/BipA low > 127
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04652 ADP-ribose pyrophosphatase YjhB, NUDIX family 0.79 H281DRAFT_05111 GTP-binding protein — —
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS01335 NUDIX hydrolase 0.80 ABZR87_RS11245 translational GTPase TypA low > 80
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS26735 NUDIX hydrolase 0.79 QEN71_RS23065 translational GTPase TypA — —
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS17470 NUDIX hydrolase 0.79 RR42_RS12810 GTP-binding protein — —
Variovorax sp. OAS795 0.55 ABID97_RS04420 NUDIX hydrolase 0.69 ABID97_RS16470 translational GTPase TypA low > 91
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS03365 NUDIX hydrolase 0.79 BPHYT_RS08105 GTP-binding protein — —
Dechlorosoma suillum PS 0.52 Dsui_3338 Zn-finger containing NTP pyrophosphohydrolase 0.71 Dsui_2423 GTP-binding protein TypA/BipA — —
Pseudomonas fluorescens SBW25 0.42 PFLU_RS18575 NUDIX hydrolase 0.59 PFLU_RS01720 translational GTPase TypA — —
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS18575 NUDIX hydrolase 0.59 PFLU_RS01720 translational GTPase TypA — —
Pseudomonas simiae WCS417 0.41 PS417_16535 NUDIX hydrolase 0.59 PS417_01665 GTP-binding protein TypA — —
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.2757.1 Nudix-like NDP and NTP phosphohydrolase YmfB 0.61 Xcc-8004.4106.1 GTP-binding protein TypA/BipA — —
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS02190 NUDIX hydrolase 0.61 ABZR86_RS20640 translational GTPase TypA 0.31 32
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_2640 Nudix-like NDP and NTP phosphohydrolase YmfB 0.60 PfGW456L13_340 GTP-binding protein TypA/BipA — —
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_22115 NUDIX hydrolase 0.60 AO356_09695 GTP-binding protein TypA — —
Pseudomonas sp. RS175 0.40 PFR28_02618 Phosphatase NudJ 0.60 PFR28_04951 GTP-binding protein TypA/BipA — —
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_27700 NUDIX hydrolase 0.60 AO353_12180 GTP-binding protein TypA — —
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_287 Nudix-like NDP and NTP phosphohydrolase YmfB 0.60 Pf6N2E2_3818 GTP-binding protein TypA/BipA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_3189 NUDIX hydrolase 0.60 Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA — —
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_3189 NUDIX hydrolase 0.60 Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA — —
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_4049 Nudix-like NDP and NTP phosphohydrolase YmfB 0.47 Pf1N1B4_1601 GTP-binding protein TypA/BipA — —
Lysobacter sp. OAE881 0.39 ABIE51_RS11505 NUDIX hydrolase 0.61 ABIE51_RS05990 translational GTPase TypA low > 62
Pseudomonas stutzeri RCH2 0.38 Psest_2022 ADP-ribose pyrophosphatase 0.59 Psest_3926 GTP-binding protein TypA/BipA low > 67
Pseudomonas sp. S08-1 0.38 OH686_00215 Nudix-like NDP and NTP phosphohydrolase NudJ 0.59 OH686_10610 GTP-binding protein TypA/BipA low > 80
Rhodanobacter denitrificans MT42 0.38 LRK55_RS00170 NUDIX hydrolase 0.60 LRK55_RS00550 translational GTPase TypA low > 63
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_06880 Phosphatase NudJ 0.60 OKGIIK_06470 typA translational GTPase TypA — —
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_1838 ADP-ribose pyrophosphatase 0.60 B158DRAFT_0725 GTP-binding protein TypA/BipA low > 40
Pseudomonas putida KT2440 0.37 PP_4013 MutT/nudix family protein 0.60 PP_5044 ribosome associated GTPase — —
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS00430 NUDIX hydrolase 0.60 LRK54_RS00775 translational GTPase TypA low > 59
Marinobacter adhaerens HP15 0.34 HP15_2085 MutT/nudix family protein 0.60 HP15_429 GTP-binding protein TypA low > 73
Acinetobacter radioresistens SK82 0.34 MPMX26_01049 Phosphatase NudJ 0.59 MPMX26_02489 GTP-binding protein TypA/BipA low > 36
Shewanella loihica PV-4 0.34 Shew_1561 NUDIX hydrolase (RefSeq) 0.61 Shew_3553 GTP-binding protein TypA (RefSeq) low > 60
Shewanella amazonensis SB2B 0.33 Sama_2061 MutT/nudix family protein (RefSeq) 0.60 Sama_3415 virulence regulator BipA (RefSeq) low > 62
Rahnella sp. WP5 0.29 EX31_RS24580 NUDIX hydrolase 0.60 EX31_RS15865 ribosome-dependent GTPase TypA low > 89
Shewanella sp. ANA-3 0.29 Shewana3_1748 NUDIX hydrolase (RefSeq) 0.61 Shewana3_0301 GTP-binding protein TypA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.28 SO2631 MutT/nudix family protein (NCBI ptt file) 0.60 SO4408 bipA virulence regulator BipA (NCBI ptt file) low > 76
Escherichia coli ECOR38 0.24 HEPCGN_24225 nudJ phosphatase NudJ 0.62 HEPCGN_12720 typA ribosome-dependent GTPase TypA low > 87
Escherichia coli Nissle 1917 0.24 ECOLIN_RS06630 phosphatase NudJ 0.62 ECOLIN_RS22315 ribosome-dependent GTPase TypA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_02534 Phosphatase NudJ 0.62 OHPLBJKB_04181 GTP-binding protein TypA/BipA low > 73
Escherichia coli ECRC98 0.24 JDDGAC_06615 nudJ phosphatase NudJ 0.62 JDDGAC_17715 typA ribosome-dependent GTPase TypA low > 86
Escherichia fergusonii Becca 0.24 EFB2_02841 Phosphatase NudJ 0.62 EFB2_04745 GTP-binding protein TypA/BipA low > 86
Escherichia coli ECRC99 0.24 KEDOAH_24835 nudJ phosphatase NudJ 0.62 KEDOAH_14060 typA ribosome-dependent GTPase TypA — —
Escherichia coli BW25113 0.24 b1134 ymfB bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) 0.62 b3871 bipA GTP-binding protein (NCBI) low > 76
Escherichia coli BL21 0.24 ECD_01132 bifunctional thiamine pyrimidine pyrophosphate hydrolase and thiamine pyrophosphate hydrolase 0.62 ECD_03756 GTP-binding protein — —
Escherichia coli ECRC62 0.24 BNILDI_19060 nudJ phosphatase NudJ 0.62 BNILDI_05310 typA ribosome-dependent GTPase TypA low > 75
Escherichia coli ECRC101 0.24 MCAODC_22335 nudJ phosphatase NudJ 0.62 MCAODC_04590 typA ribosome-dependent GTPase TypA low > 87
Escherichia coli ECRC100 0.24 OKFHMN_00750 nudJ phosphatase NudJ 0.62 OKFHMN_14090 typA ribosome-dependent GTPase TypA low > 80
Escherichia coli ECOR27 0.24 NOLOHH_20895 nudJ phosphatase NudJ 0.62 NOLOHH_06220 typA ribosome-dependent GTPase TypA low > 75
Escherichia coli ECRC102 0.24 NIAGMN_24895 nudJ phosphatase NudJ 0.62 NIAGMN_11845 typA ribosome-dependent GTPase TypA — —
Enterobacter sp. TBS_079 0.24 MPMX20_01818 Phosphatase NudJ 0.62 MPMX20_04594 GTP-binding protein TypA/BipA — —
Klebsiella michiganensis M5al 0.23 BWI76_RS11320 NUDIX hydrolase 0.61 BWI76_RS00410 translational GTPase TypA — —
Enterobacter asburiae PDN3 0.23 EX28DRAFT_1796 ADP-ribose pyrophosphatase 0.61 EX28DRAFT_4353 GTP-binding protein TypA/BipA — —
Serratia liquefaciens MT49 0.23 IAI46_10445 NUDIX hydrolase 0.60 IAI46_24945 ribosome-dependent GTPase TypA low > 86
Erwinia tracheiphila SCR3 0.23 LU632_RS14570 NUDIX hydrolase 0.60 LU632_RS22150 typA ribosome-dependent GTPase TypA low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF3419 Nudix-like NDP and NTP phosphohydrolase YmfB 0.62 GFF2223 GTP-binding protein TypA/BipA low > 78
Pectobacterium carotovorum WPP14 0.22 HER17_RS11620 NUDIX hydrolase 0.61 HER17_RS21425 ribosome-dependent GTPase TypA low > 75
Dickeya dadantii 3937 0.22 DDA3937_RS11480 NUDIX hydrolase 0.61 DDA3937_RS00140 ribosome-dependent GTPase TypA low > 74
Dickeya dianthicola ME23 0.22 DZA65_RS11860 NUDIX hydrolase 0.61 DZA65_RS22195 ribosome-dependent GTPase TypA low > 75
Dickeya dianthicola 67-19 0.22 HGI48_RS11525 NUDIX hydrolase 0.61 HGI48_RS21220 ribosome-dependent GTPase TypA low > 71
Pantoea sp. MT58 0.21 IAI47_11910 NUDIX hydrolase 0.61 IAI47_00465 ribosome-dependent GTPase TypA low > 76

Not shown: 0 genomes with orthologs for HSERO_RS03475 only; 33 genomes with orthologs for HSERO_RS17980 only