Conservation of cofitness between HSERO_RS01325 and HSERO_RS11155 in Herbaspirillum seropedicae SmR1

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS01325 cation/multidrug efflux protein 1.0 HSERO_RS11155 peptidyl-prolyl cis-trans isomerase 0.49 1
Paraburkholderia bryophila 376MFSha3.1 0.73 H281DRAFT_05197 Multidrug efflux pump subunit AcrB 0.38 H281DRAFT_00902 peptidyl-prolyl cis-trans isomerase D low > 103
Paraburkholderia graminis OAS925 0.72 ABIE53_002354 multidrug efflux pump 0.38 ABIE53_002134 peptidyl-prolyl cis-trans isomerase D low > 113
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS07190 efflux RND transporter permease subunit 0.42 QEN71_RS21955 SurA N-terminal domain-containing protein low > 153
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS11375 acriflavin resistance protein 0.39 BPHYT_RS09480 peptidyl-prolyl cis-trans isomerase low > 109
Dyella japonica UNC79MFTsu3.2 0.67 ABZR86_RS11125 efflux RND transporter permease subunit 0.18 ABZR86_RS07300 SurA N-terminal domain-containing protein low > 74
Pseudomonas fluorescens SBW25 0.50 PFLU_RS06185 efflux RND transporter permease subunit 0.17 PFLU_RS19150 peptidyl-prolyl cis-trans isomerase — —
Pseudomonas fluorescens SBW25-INTG 0.50 PFLU_RS06185 efflux RND transporter permease subunit 0.17 PFLU_RS19150 peptidyl-prolyl cis-trans isomerase — —
Pseudomonas stutzeri RCH2 0.50 Psest_1566 Cation/multidrug efflux pump 0.18 Psest_2283 Parvulin-like peptidyl-prolyl isomerase — —
Pseudomonas simiae WCS417 0.50 PS417_06115 multidrug transporter AcrB 0.17 PS417_17215 peptidylprolyl isomerase low > 88
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_4730 RND efflux transporter 0.18 PfGW456L13_2556 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) low > 87
Pseudomonas sp. S08-1 0.49 OH686_06740 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) 0.18 OH686_03625 Peptidyl-prolyl cis-trans isomerase PpiD 0.68 45
Dechlorosoma suillum PS 0.49 Dsui_0408 cation/multidrug efflux pump 0.38 Dsui_2202 parvulin-like peptidyl-prolyl isomerase low > 51
Pseudomonas fluorescens FW300-N1B4 0.49 Pf1N1B4_3063 RND efflux transporter 0.18 Pf1N1B4_3949 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) — —
Pseudomonas putida KT2440 0.49 PP_1517 RND efflux transporter 0.18 PP_2304 putative Peptidyl-prolyl cis-trans isomerase D low > 96
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_06130 multidrug transporter AcrB 0.17 AO356_01725 peptidylprolyl isomerase — —
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_3091 RND efflux transporter 0.18 Pf6N2E2_2214 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) — —
Pseudomonas sp. RS175 0.49 PFR28_00379 Cobalt-zinc-cadmium resistance protein CzcA 0.18 PFR28_01231 Peptidyl-prolyl cis-trans isomerase D low > 88
Lysobacter sp. OAE881 0.48 ABIE51_RS17595 efflux RND transporter permease subunit 0.18 ABIE51_RS14120 peptidyl-prolyl cis-trans isomerase low > 62
Azospirillum sp. SherDot2 0.48 MPMX19_05260 Cobalt-zinc-cadmium resistance protein CzcA 0.11 MPMX19_00894 Peptidyl-prolyl cis-trans isomerase D — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS01385 AcrB/AcrD/AcrF family protein 0.44 RALBFv3_RS01320 peptidylprolyl isomerase low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS14695 AcrB/AcrD/AcrF family protein 0.44 UW163_RS14630 peptidylprolyl isomerase — —
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS13180 efflux RND transporter permease subunit 0.43 ABZR87_RS12765 SurA N-terminal domain-containing protein low > 80
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS07915 multidrug transporter AcrB 0.46 RR42_RS09045 peptidylprolyl isomerase low > 128
Ralstonia solanacearum PSI07 0.46 RPSI07_RS16100 AcrB/AcrD/AcrF family protein 0.43 RPSI07_RS16155 peptidylprolyl isomerase low > 81
Ralstonia solanacearum GMI1000 0.46 RS_RS08335 AcrB/AcrD/AcrF family protein 0.44 RS_RS08675 peptidyl-prolyl cis-trans isomerase low > 80
Rhodopseudomonas palustris CGA009 0.44 TX73_022880 efflux RND transporter permease subunit 0.10 TX73_014975 SurA N-terminal domain-containing protein low > 86
Acidovorax sp. GW101-3H11 0.43 Ac3H11_933 Probable transmembrane drug efflux protein 0.37 Ac3H11_377 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) — —
Variovorax sp. SCN45 0.43 GFF493 RND efflux system, inner membrane transporter 0.36 GFF2852 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) low > 127
Variovorax sp. OAS795 0.43 ABID97_RS17615 efflux RND transporter permease subunit 0.36 ABID97_RS10675 SurA N-terminal domain-containing protein low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF4033 Probable transmembrane drug efflux protein 0.37 GFF3854 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) low > 90
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0346 Acriflavin resistance protein 0.17 Psyr_1751 PpiC-type peptidyl-prolyl cis-trans isomerase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0346 Acriflavin resistance protein 0.17 Psyr_1751 PpiC-type peptidyl-prolyl cis-trans isomerase low > 86
Sinorhizobium meliloti 1021 0.42 SM_b20345 efflux protein 0.08 SMc00234 peptidyl-prolyl cis-trans isomerase — —
Pectobacterium carotovorum WPP14 0.38 HER17_RS07500 efflux RND transporter permease subunit 0.16 HER17_RS15830 peptidylprolyl isomerase low > 75
Dickeya dianthicola ME23 0.38 DZA65_RS08250 efflux RND transporter permease subunit 0.15 DZA65_RS06030 peptidylprolyl isomerase low > 75
Rahnella sp. WP5 0.38 EX31_RS17700 efflux RND transporter permease subunit 0.14 EX31_RS22265 peptidylprolyl isomerase low > 89
Dickeya dadantii 3937 0.37 DDA3937_RS04730 efflux RND transporter permease subunit 0.16 DDA3937_RS05660 peptidylprolyl isomerase low > 74
Dickeya dianthicola 67-19 0.35 HGI48_RS07915 efflux RND transporter permease subunit 0.15 HGI48_RS05705 peptidylprolyl isomerase low > 71
Klebsiella michiganensis M5al 0.35 BWI76_RS05720 cation/multidrug efflux pump 0.14 BWI76_RS06545 peptidylprolyl isomerase low > 92
Enterobacter sp. TBS_079 0.35 MPMX20_02160 Nickel and cobalt resistance protein CnrA 0.14 MPMX20_01032 Peptidyl-prolyl cis-trans isomerase D low > 85
Pantoea sp. MT58 0.35 IAI47_21725 efflux RND transporter permease subunit 0.14 IAI47_14635 peptidylprolyl isomerase low > 76
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.557.1 cation efflux system protein 0.17 Xcc-8004.4039.1 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) low > 74
Enterobacter asburiae PDN3 0.35 EX28DRAFT_1393 Cation/multidrug efflux pump 0.14 EX28DRAFT_2529 Parvulin-like peptidyl-prolyl isomerase low > 76
Azospirillum brasilense Sp245 0.34 AZOBR_RS32765 multidrug transporter 0.11 AZOBR_RS07495 peptidylprolyl isomerase low > 97
Marinobacter adhaerens HP15 0.33 HP15_1118 transporter, AcrB/D/F family 0.18 HP15_2181 PpiC-type peptidyl-prolyl cis-trans isomerase low > 73
Vibrio cholerae E7946 ATCC 55056 0.27 CSW01_08410 AcrB/AcrD/AcrF family protein 0.17 CSW01_09595 peptidylprolyl isomerase low > 62
Shewanella sp. ANA-3 0.26 Shewana3_3849 acriflavin resistance protein (RefSeq) 0.20 Shewana3_2657 PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) low > 73
Shewanella loihica PV-4 0.25 Shew_0466 acriflavin resistance protein (RefSeq) 0.18 Shew_2504 PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.25 Sama_0675 AcrB/AcrD/AcrF family transporter (RefSeq) 0.18 Sama_1228 peptidyl-prolyl cis-trans isomerase D (RefSeq) low > 62
Shewanella oneidensis MR-1 0.15 SO3279 AcrB/AcrD/AcrF family protein (NCBI ptt file) 0.20 SO1798 ppiD peptidyl-prolyl cis-trans isomerase D (NCBI ptt file) low > 76

Not shown: 18 genomes with orthologs for HSERO_RS01325 only; 25 genomes with orthologs for HSERO_RS11155 only