Conservation of cofitness between HSERO_RS03350 and HSERO_RS09420 in Herbaspirillum seropedicae SmR1

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03350 hypothetical protein 1.0 HSERO_RS09420 HAD family hydrolase 0.31 4
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS08070 pyruvate kinase 0.62 ABZR87_RS10095 HAD-IA family hydrolase low > 80
Burkholderia phytofirmans PsJN 0.73 BPHYT_RS16265 hypothetical protein 0.68 BPHYT_RS14475 HAD family hydrolase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.73 H281DRAFT_04189 pyruvate kinase 0.68 H281DRAFT_04341 phosphoglycolate phosphatase low > 103
Paraburkholderia graminis OAS925 0.73 ABIE53_003427 pyruvate kinase 0.69 ABIE53_003057 phosphoglycolate phosphatase low > 113
Ralstonia solanacearum PSI07 0.73 RPSI07_RS21150 pyruvate kinase 0.62 RPSI07_RS19080 HAD family hydrolase low > 81
Ralstonia solanacearum GMI1000 0.72 RS_RS02865 pyruvate kinase 0.63 RS_RS05160 haloacid dehalogenase low > 80
Ralstonia solanacearum UW163 0.72 UW163_RS01430 pyruvate kinase 0.62 UW163_RS11845 haloacid dehalogenase
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS12180 pyruvate kinase 0.62 RALBFv3_RS14380 haloacid dehalogenase low > 76
Paraburkholderia sabiae LMG 24235 0.72 QEN71_RS02430 pyruvate kinase 0.68 QEN71_RS04505 HAD-IA family hydrolase low > 153
Cupriavidus basilensis FW507-4G11 0.72 RR42_RS03210 pyruvate kinase 0.64 RR42_RS14150 haloacid dehalogenase low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF2780 Pyruvate kinase (EC 2.7.1.40) 0.57 GFF3320 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C low > 90
Acidovorax sp. GW101-3H11 0.67 Ac3H11_654 Pyruvate kinase (EC 2.7.1.40) 0.55 Ac3H11_1589 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C low > 79
Dechlorosoma suillum PS 0.66 Dsui_0052 pyruvate kinase 0.56 Dsui_2438 haloacid dehalogenase superfamily enzyme, subfamily IA low > 51
Variovorax sp. SCN45 0.66 GFF5504 Pyruvate kinase (EC 2.7.1.40) 0.52 GFF3848 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C low > 127
Variovorax sp. OAS795 0.65 ABID97_RS01755 pyruvate kinase 0.53 ABID97_RS08255 HAD-IA family hydrolase low > 91
Castellaniella sp019104865 MT123 0.48 ABCV34_RS02525 pyruvate kinase 0.38 ABCV34_RS08410 HAD-IA family hydrolase low > 48
Pseudomonas putida KT2440 0.48 PP_1362 pyruvate kinase II 0.34 PP_1907 Hydrolase, haloacid dehalogenase-like family low > 96
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_1404 pyruvate kinase 0.38 B158DRAFT_1769 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E low > 40
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_03775 pyruvate kinase 0.34 AO353_01400 HAD family hydrolase low > 101
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_678 Pyruvate kinase (EC 2.7.1.40) 0.35 Pf1N1B4_458 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C low > 87
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4029 pyruvate kinase 0.37 Psyr_1640 HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4029 pyruvate kinase 0.37 Psyr_1640 HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 low > 86
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_17830 pyruvate kinase 0.35 AO356_20130 HAD family hydrolase low > 104
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS24255 pyruvate kinase 0.33 PFLU_RS23090 HAD-IA family hydrolase low > 109
Pseudomonas fluorescens SBW25 0.47 PFLU_RS24255 pyruvate kinase 0.33 PFLU_RS23090 HAD-IA family hydrolase low > 109
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_5494 Pyruvate kinase (EC 2.7.1.40) 0.35 Pf6N2E2_5945 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C 0.29 101
Pseudomonas simiae WCS417 0.47 PS417_22620 pyruvate kinase 0.33 PS417_21475 HAD family hydrolase low > 88
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_1813 Pyruvate kinase (EC 2.7.1.40) 0.36 PfGW456L13_2098 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C low > 87
Shewanella loihica PV-4 0.47 Shew_2050 pyruvate kinase (RefSeq) 0.39 Shew_1595 HAD family hydrolase (RefSeq)
Pseudomonas stutzeri RCH2 0.47 Psest_3190 pyruvate kinase 0.33 Psest_1681 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E low > 67
Pseudomonas sp. RS175 0.46 PFR28_03455 Pyruvate kinase II 0.35 PFR28_03017 hypothetical protein low > 88
Dickeya dianthicola ME23 0.46 DZA65_RS10570 pyruvate kinase 0.26 DZA65_RS00375 HAD family hydrolase low > 75
Dickeya dadantii 3937 0.46 DDA3937_RS10125 pyruvate kinase 0.26 DDA3937_RS20870 HAD family hydrolase low > 74
Dickeya dianthicola 67-19 0.46 HGI48_RS10155 pyruvate kinase 0.26 HGI48_RS00375 HAD-IA family hydrolase low > 71
Shewanella sp. ANA-3 0.46 Shewana3_2153 pyruvate kinase (RefSeq) 0.35 Shewana3_2565 HAD family hydrolase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.45 Sama_1814 pyruvate kinase (RefSeq) 0.41 Sama_1987 HAD family hydrolase (RefSeq) low > 62
Pseudomonas sp. S08-1 0.45 OH686_18800 pyruvate kinase 0.38 OH686_22100 phosphoglycolate phosphatase low > 80
Alteromonas macleodii MIT1002 0.45 MIT1002_02409 Pyruvate kinase II 0.36 MIT1002_01726 5'-nucleotidase
Marinobacter adhaerens HP15 0.43 HP15_2176 pyruvate kinase II 0.32 HP15_2220 HAD-superfamily hydrolase, subfamily IA, variant 3 low > 73
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.1243.1 Pyruvate kinase (EC 2.7.1.40) 0.15 Xcc-8004.1242.1 Phosphoglycolate phosphatase (EC 3.1.3.18) low > 74
Azospirillum sp. SherDot2 0.34 MPMX19_04074 Pyruvate kinase 0.24 MPMX19_01717 Pyrophosphatase PpaX low > 112
Magnetospirillum magneticum AMB-1 0.33 AMB_RS16010 pyruvate kinase 0.24 AMB_RS15625 phosphatase
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_0685 pyruvate kinase 0.28 Ga0059261_1034 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E low > 68
Dinoroseobacter shibae DFL-12 0.32 Dshi_0228 pyruvate kinase (RefSeq) 0.24 Dshi_0316 HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq)
Azospirillum brasilense Sp245 0.32 AZOBR_RS06845 pyruvate kinase 0.24 AZOBR_RS06920 haloacid dehalogenase low > 97
Bosea sp. OAE506 0.31 ABIE41_RS06285 pyruvate kinase 0.19 ABIE41_RS14720 HAD-IA family hydrolase low > 77
Phaeobacter inhibens DSM 17395 0.31 PGA1_c06970 pyruvate kinase PykA 0.23 PGA1_c01960 putative hydrolase
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS01590 pyruvate kinase 0.11 ABZR88_RS09890 HAD family hydrolase
Sinorhizobium meliloti 1021 0.31 SMc04005 pyruvate kinase 0.21 SMc01276 phosphoglycolate phosphatase low > 103
Rhodospirillum rubrum S1H 0.31 Rru_A2465 Pyruvate kinase (NCBI) 0.28 Rru_A2658 haloacid dehalogenase-like hydrolase (NCBI)
Bifidobacterium breve UCC2003 0.30 BBR_RS14295 pyruvate kinase 0.17 BBR_RS17810 HAD family hydrolase
Agrobacterium fabrum C58 0.30 Atu3762 pyruvate kinase 0.20 Atu1472 hydrolase
Rhizobium sp. OAE497 0.29 ABIE40_RS16145 pyruvate kinase 0.21 ABIE40_RS09910 HAD-IA family hydrolase
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS09670 pyruvate kinase 0.18 HMPREF1058_RS14395 HAD family hydrolase
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS07010 pyruvate kinase 0.18 ABI39_RS10015 HAD family hydrolase low > 72
Parabacteroides merdae CL09T00C40 0.21 HMPREF1078_RS04695 pyruvate kinase 0.13 HMPREF1078_RS13105 HAD hydrolase-like protein low > 61
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS01240 pyruvate kinase 0.19 HMPREF1181_RS08825 HAD family hydrolase low > 56

Not shown: 44 genomes with orthologs for HSERO_RS03350 only; 1 genomes with orthologs for HSERO_RS09420 only