| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS20770 | | MFS transporter | 1.0 | HSERO_RS09265 | | peptidase C69 | 0.44 | 6 |
| Ralstonia sp. UNC404CL21Col | 0.70 | ABZR87_RS06820 | | cytochrome c oxidase subunit 3 | 0.73 | ABZR87_RS09660 | | metalloprotease PmbA | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.69 | RPSI07_RS22340 | | cytochrome c oxidase subunit 3 | 0.72 | RPSI07_RS19505 | | metalloprotease PmbA | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.69 | RALBFv3_RS10965 | | cytochrome c oxidase subunit 3 | 0.73 | RALBFv3_RS13965 | | metalloprotease PmbA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.69 | UW163_RS02615 | | cytochrome c oxidase subunit 3 | 0.73 | UW163_RS15845 | | metalloprotease PmbA | — | — |
| Ralstonia solanacearum GMI1000 | 0.69 | RS_RS01805 | | cytochrome c oxidase subunit 3 | 0.70 | RS_RS04700 | | metalloprotease PmbA | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.68 | RR42_RS01895 | | MFS transporter | 0.71 | RR42_RS14750 | | peptidase PMbA | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.63 | QEN71_RS01520 | | cytochrome c oxidase subunit 3 | 0.69 | QEN71_RS04270 | | metalloprotease PmbA | low | > 153 |
| Castellaniella sp019104865 MT123 | 0.62 | ABCV34_RS13255 | | cytochrome c oxidase subunit 3 | 0.59 | ABCV34_RS10610 | | metalloprotease PmbA | low | > 48 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.62 | H281DRAFT_01990 | | cytochrome c oxidase subunit 3 | 0.69 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.61 | BPHYT_RS02665 | | MFS transporter | 0.69 | BPHYT_RS14705 | | peptidase C69 | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.61 | ABIE53_000678 | | cytochrome c oxidase subunit 3 | 0.69 | ABIE53_003116 | | PmbA protein | low | > 113 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.61 | GFF693 | | Cytochrome c oxidase polypeptide III (EC 1.9.3.1) | 0.61 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.61 | Ac3H11_3888 | | Cytochrome c oxidase polypeptide III (EC 1.9.3.1) | 0.63 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 79 |
| Variovorax sp. SCN45 | 0.61 | GFF2302 | | Cytochrome c oxidase polypeptide III (EC 1.9.3.1) | 0.62 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 127 |
| Variovorax sp. OAS795 | 0.60 | ABID97_RS23940 | | cytochrome c oxidase subunit 3 | 0.61 | ABID97_RS20695 | | metalloprotease PmbA | low | > 91 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS19190 | | cytochrome c oxidase subunit 3 | 0.42 | ABIE51_RS06805 | | metalloprotease PmbA | low | > 62 |
| Pseudomonas fluorescens SBW25-INTG | 0.52 | PFLU_RS00305 | | cytochrome c oxidase subunit 3 | 0.44 | PFLU_RS04350 | | metalloprotease PmbA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.52 | PFLU_RS00305 | | cytochrome c oxidase subunit 3 | 0.44 | PFLU_RS04350 | | metalloprotease PmbA | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_1857 | | Cytochrome c oxidase polypeptide III (EC 1.9.3.1) | 0.43 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_11175 | | MFS transporter | 0.45 | AO356_07085 | | peptidase PmbA | low | > 104 |
| Pseudomonas simiae WCS417 | 0.51 | PS417_00315 | | MFS transporter | 0.44 | PS417_04295 | | peptidase PmbA | 0.22 | 75 |
| Pseudomonas sp. RS175 | 0.51 | PFR28_04688 | | Cytochrome c oxidase subunit 3 | 0.45 | PFR28_00163 | | Metalloprotease PmbA | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.51 | Pf6N2E2_4101 | | Cytochrome c oxidase polypeptide III (EC 1.9.3.1) | 0.45 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.51 | AO353_10845 | | MFS transporter | 0.43 | AO353_05205 | | peptidase PmbA | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.50 | PfGW456L13_611 | | Cytochrome c oxidase polypeptide III (EC 1.9.3.1) | 0.43 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.49 | Xcc-8004.4842.1 | | Cytochrome c oxidase polypeptide III (EC 1.9.3.1) | 0.44 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 74 |
| Shewanella loihica PV-4 | 0.48 | Shew_0122 | | cytochrome c oxidase, subunit III (RefSeq) | 0.41 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.47 | MIT1002_04032 | | Cytochrome c oxidase subunit 3 | 0.42 | MIT1002_00230 | | peptidase PmbA | low | > 70 |
| Pseudomonas stutzeri RCH2 | 0.47 | Psest_4329 | | Heme/copper-type cytochrome/quinol oxidase, subunit 3 | 0.41 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 67 |
| Pseudomonas putida KT2440 | 0.45 | PP_0106 | | cytochrome c oxidase subunit 3 | 0.44 | PP_0942 | | regulatory protease | low | > 96 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_12310 | | Cytochrome c oxidase polypeptide III | 0.43 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 80 |
| Shewanella amazonensis SB2B | 0.44 | Sama_3486 | | cytochrome c oxidase subunit III (RefSeq) | 0.44 | Sama_0482 | | PmbA protein (RefSeq) | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS12920 | | cytochrome c oxidase subunit 3 | 0.44 | ABZR86_RS21700 | | metalloprotease PmbA | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.43 | OKGIIK_16530 | cyoC | cytochrome c oxidase subunit 3 | 0.45 | OKGIIK_10260 | pmbA | metalloprotease PmbA | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.43 | LRK55_RS06850 | | cytochrome c oxidase subunit 3 | 0.44 | LRK55_RS03125 | | metalloprotease PmbA | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.43 | LRK54_RS07110 | | cytochrome c oxidase subunit 3 | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | 0.64 | 9 |
| Shewanella oneidensis MR-1 | 0.42 | SO4609 | | cytochrome c oxidase subunit III (NCBI ptt file) | 0.42 | SO4078 | pmbA | pmba protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3994 | | cytochrome c oxidase, subunit III (RefSeq) | 0.42 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | low | > 73 |
| Kangiella aquimarina DSM 16071 | 0.40 | B158DRAFT_0134 | | Heme/copper-type cytochrome/quinol oxidase, subunit 3 | 0.38 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | low | > 40 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.34 | A4249_RS00135 | | cytochrome c oxidase subunit 3 | 0.25 | A4249_RS09195 | | TldD/PmbA family protein | low | > 48 |
| Rhizobium sp. OAE497 | 0.33 | ABIE40_RS04085 | | cytochrome c oxidase subunit 3 | 0.23 | ABIE40_RS03780 | | TldD/PmbA family protein | low | > 107 |
| Agrobacterium fabrum C58 | 0.32 | Atu0771 | | cytochrome c oxidase subunit III | 0.24 | Atu0693 | | PmbA/TldD related protein | low | > 89 |
| Magnetospirillum magneticum AMB-1 | 0.32 | AMB_RS10950 | | cytochrome c oxidase subunit 3 | 0.25 | AMB_RS22120 | | TldD/PmbA family protein | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.31 | TX73_004310 | | cytochrome c oxidase subunit 3 | 0.26 | TX73_005930 | | TldD/PmbA family protein | low | > 86 |
| Azospirillum brasilense Sp245 | 0.30 | AZOBR_RS10570 | | cytochrome B562 | 0.31 | AZOBR_RS11930 | | modulator protein | low | > 97 |
| Dinoroseobacter shibae DFL-12 | 0.30 | Dshi_1144 | | cytochrome c oxidase subunit III (RefSeq) | 0.27 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | — | — |
| Sinorhizobium meliloti 1021 | 0.30 | SMc00013 | | cytochrome C oxidase subunit III transmembrane protein | 0.26 | SMc00897 | | PMBA protein | low | > 103 |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_03513 | | cytochrome c oxidase subunit III coxC | 0.27 | CCNA_00311 | | Zn-dependent protease family protein | low | > 67 |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_03513 | | cytochrome c oxidase subunit III coxC | 0.27 | CCNA_00311 | | Zn-dependent protease family protein | low | > 66 |
| Azospirillum sp. SherDot2 | 0.27 | MPMX19_00889 | | Cytochrome c oxidase subunit 3 | 0.30 | MPMX19_01886 | | Metalloprotease PmbA | low | > 112 |
| Sphingomonas koreensis DSMZ 15582 | 0.26 | Ga0059261_2002 | | Heme/copper-type cytochrome/quinol oxidase, subunit 3 | 0.26 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 68 |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c06290 | | cytochrome c oxidase subunit 3 | 0.28 | PGA1_c33480 | | protein PmbA | — | — |
Not shown: 2 genomes with orthologs for HSERO_RS20770 only; 33 genomes with orthologs for HSERO_RS09265 only