Conservation of cofitness between HSERO_RS03475 and HSERO_RS02315 in Herbaspirillum seropedicae SmR1

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03475 NUDIX hydrolase 1.0 HSERO_RS02315 transcriptional regulator 0.35 12
Acidovorax sp. GW101-3H11 0.60 Ac3H11_4361 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.42 Ac3H11_3981 UPF0301 protein YqgE low > 79
Ralstonia solanacearum UW163 0.59 UW163_RS07885 NUDIX hydrolase 0.53 UW163_RS00955 DUF179 domain-containing protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF2602 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.42 GFF648 UPF0301 protein YqgE low > 90
Ralstonia solanacearum PSI07 0.59 RPSI07_RS11560 NUDIX hydrolase 0.53 RPSI07_RS20650 YqgE/AlgH family protein low > 81
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS05740 NUDIX hydrolase 0.53 RALBFv3_RS12610 DUF179 domain-containing protein low > 76
Paraburkholderia graminis OAS925 0.59 ABIE53_000811 8-oxo-dGTP pyrophosphatase MutT (NUDIX family) 0.49 ABIE53_001128 putative transcriptional regulator low > 113
Ralstonia solanacearum GMI1000 0.59 RS_RS13630 NUDIX hydrolase 0.52 RS_RS03395 YqgE/AlgH family protein — —
Variovorax sp. SCN45 0.58 GFF4911 Nudix-like NDP and NTP phosphohydrolase NudJ 0.42 GFF2157 UPF0301 protein YqgE low > 127
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04652 ADP-ribose pyrophosphatase YjhB, NUDIX family 0.49 H281DRAFT_04814 putative transcriptional regulator low > 103
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS01335 NUDIX hydrolase 0.50 ABZR87_RS08610 YqgE/AlgH family protein low > 80
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS26735 NUDIX hydrolase 0.51 QEN71_RS25795 YqgE/AlgH family protein low > 153
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS17470 NUDIX hydrolase 0.50 RR42_RS15875 hypothetical protein low > 128
Variovorax sp. OAS795 0.55 ABID97_RS04420 NUDIX hydrolase 0.42 ABID97_RS24675 YqgE/AlgH family protein low > 91
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS03365 NUDIX hydrolase 0.49 BPHYT_RS04220 hypothetical protein low > 109
Dechlorosoma suillum PS 0.52 Dsui_3338 Zn-finger containing NTP pyrophosphohydrolase 0.43 Dsui_0593 putative transcriptional regulator low > 51
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS18575 NUDIX hydrolase 0.32 PFLU_RS28330 YqgE/AlgH family protein low > 109
Pseudomonas fluorescens SBW25 0.42 PFLU_RS18575 NUDIX hydrolase 0.32 PFLU_RS28330 YqgE/AlgH family protein low > 109
Pseudomonas simiae WCS417 0.41 PS417_16535 NUDIX hydrolase 0.33 PS417_26685 hypothetical protein low > 88
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.2757.1 Nudix-like NDP and NTP phosphohydrolase YmfB 0.35 Xcc-8004.1720.1 UPF0301 protein YqgE low > 74
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS02190 NUDIX hydrolase 0.35 ABZR86_RS10380 YqgE/AlgH family protein — —
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_2640 Nudix-like NDP and NTP phosphohydrolase YmfB 0.34 PfGW456L13_1019 UPF0301 protein YqgE low > 87
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_22115 NUDIX hydrolase 0.34 AO356_13465 hypothetical protein low > 104
Pseudomonas sp. RS175 0.40 PFR28_02618 Phosphatase NudJ 0.33 PFR28_04234 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_27700 NUDIX hydrolase 0.34 AO353_08120 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_287 Nudix-like NDP and NTP phosphohydrolase YmfB 0.34 Pf6N2E2_4609 UPF0301 protein YqgE low > 103
Lysobacter sp. OAE881 0.39 ABIE51_RS11505 NUDIX hydrolase 0.33 ABIE51_RS16025 YqgE/AlgH family protein low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_3189 NUDIX hydrolase 0.32 Psyr_0485 Protein of unknown function DUF179 low > 86
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_4049 Nudix-like NDP and NTP phosphohydrolase YmfB 0.34 Pf1N1B4_2350 UPF0301 protein YqgE low > 87
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_3189 NUDIX hydrolase 0.32 Psyr_0485 Protein of unknown function DUF179 low > 86
Pseudomonas stutzeri RCH2 0.38 Psest_2022 ADP-ribose pyrophosphatase 0.34 Psest_0294 Putative transcriptional regulator low > 67
Pseudomonas sp. S08-1 0.38 OH686_00215 Nudix-like NDP and NTP phosphohydrolase NudJ 0.36 OH686_10925 UPF0301 protein YqgE low > 80
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_1838 ADP-ribose pyrophosphatase 0.36 B158DRAFT_0191 Putative transcriptional regulator low > 40
Rhodanobacter denitrificans MT42 0.38 LRK55_RS00170 NUDIX hydrolase 0.35 LRK55_RS03980 YqgE/AlgH family protein — —
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_06880 Phosphatase NudJ 0.34 OKGIIK_11085 algH YqgE/AlgH family protein low > 52
Pseudomonas putida KT2440 0.37 PP_4013 MutT/nudix family protein 0.32 PP_4995 putative protein possibly involved in the control of exopolysaccharide production low > 96
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS00430 NUDIX hydrolase 0.35 LRK54_RS04210 YqgE/AlgH family protein low > 59
Marinobacter adhaerens HP15 0.34 HP15_2085 MutT/nudix family protein 0.36 HP15_3510 transcriptional regulator low > 73
Acinetobacter radioresistens SK82 0.34 MPMX26_01049 Phosphatase NudJ 0.30 MPMX26_00238 hypothetical protein low > 36
Shewanella loihica PV-4 0.34 Shew_1561 NUDIX hydrolase (RefSeq) 0.31 Shew_1144 hypothetical protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.33 Sama_2061 MutT/nudix family protein (RefSeq) 0.35 Sama_2472 putative transcriptional regulator (RefSeq) low > 62
Rahnella sp. WP5 0.29 EX31_RS24580 NUDIX hydrolase 0.33 EX31_RS02670 YqgE/AlgH family protein low > 89
Shewanella sp. ANA-3 0.29 Shewana3_1748 NUDIX hydrolase (RefSeq) 0.33 Shewana3_1200 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.28 SO2631 MutT/nudix family protein (NCBI ptt file) 0.33 SO3346 conserved hypothetical protein (NCBI ptt file) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_02534 Phosphatase NudJ 0.37 OHPLBJKB_00770 hypothetical protein low > 73
Escherichia fergusonii Becca 0.24 EFB2_02841 Phosphatase NudJ 0.37 EFB2_00954 hypothetical protein low > 86
Escherichia coli ECRC101 0.24 MCAODC_22335 nudJ phosphatase NudJ 0.37 MCAODC_09790 yqgE YqgE/AlgH family protein low > 87
Escherichia coli ECRC62 0.24 BNILDI_19060 nudJ phosphatase NudJ 0.37 BNILDI_09720 yqgE YqgE/AlgH family protein low > 75
Escherichia coli ECRC98 0.24 JDDGAC_06615 nudJ phosphatase NudJ 0.37 JDDGAC_22900 yqgE YqgE/AlgH family protein low > 86
Escherichia coli BW25113 0.24 b1134 ymfB bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) 0.36 b2948 yqgE orf, hypothetical protein (VIMSS) low > 76
Escherichia coli BL21 0.24 ECD_01132 bifunctional thiamine pyrimidine pyrophosphate hydrolase and thiamine pyrophosphate hydrolase 0.36 ECD_02778 uncharacterized protein — —
Escherichia coli ECRC99 0.24 KEDOAH_24835 nudJ phosphatase NudJ 0.36 KEDOAH_08870 algH YqgE/AlgH family protein — —
Escherichia coli ECOR38 0.24 HEPCGN_24225 nudJ phosphatase NudJ 0.37 HEPCGN_18575 yqgE YqgE/AlgH family protein low > 87
Escherichia coli ECOR27 0.24 NOLOHH_20895 nudJ phosphatase NudJ 0.37 NOLOHH_11140 yqgE YqgE/AlgH family protein low > 75
Escherichia coli Nissle 1917 0.24 ECOLIN_RS06630 phosphatase NudJ 0.36 ECOLIN_RS16400 YqgE/AlgH family protein — —
Escherichia coli ECRC100 0.24 OKFHMN_00750 nudJ phosphatase NudJ 0.37 OKFHMN_19270 yqgE YqgE/AlgH family protein low > 80
Escherichia coli ECRC102 0.24 NIAGMN_24895 nudJ phosphatase NudJ 0.37 NIAGMN_17035 yqgE YqgE/AlgH family protein — —
Enterobacter sp. TBS_079 0.24 MPMX20_01818 Phosphatase NudJ 0.35 MPMX20_03806 hypothetical protein low > 85
Klebsiella michiganensis M5al 0.23 BWI76_RS11320 NUDIX hydrolase 0.36 BWI76_RS24080 DUF179 domain-containing protein — —
Enterobacter asburiae PDN3 0.23 EX28DRAFT_1796 ADP-ribose pyrophosphatase 0.35 EX28DRAFT_2986 Putative transcriptional regulator low > 76
Serratia liquefaciens MT49 0.23 IAI46_10445 NUDIX hydrolase 0.35 IAI46_21395 YqgE/AlgH family protein low > 86
Erwinia tracheiphila SCR3 0.23 LU632_RS14570 NUDIX hydrolase 0.35 LU632_RS05475 YqgE/AlgH family protein low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF3419 Nudix-like NDP and NTP phosphohydrolase YmfB 0.36 GFF3050 UPF0301 protein YqgE low > 78
Pectobacterium carotovorum WPP14 0.22 HER17_RS11620 NUDIX hydrolase 0.35 HER17_RS02630 YqgE/AlgH family protein low > 75
Dickeya dadantii 3937 0.22 DDA3937_RS11480 NUDIX hydrolase 0.36 DDA3937_RS18565 YqgE/AlgH family protein low > 74
Dickeya dianthicola ME23 0.22 DZA65_RS11860 NUDIX hydrolase 0.36 DZA65_RS19635 YqgE/AlgH family protein low > 75
Dickeya dianthicola 67-19 0.22 HGI48_RS11525 NUDIX hydrolase 0.36 HGI48_RS18500 YqgE/AlgH family protein low > 71
Pantoea sp. MT58 0.21 IAI47_11910 NUDIX hydrolase 0.35 IAI47_03610 YqgE/AlgH family protein low > 76

Not shown: 0 genomes with orthologs for HSERO_RS03475 only; 15 genomes with orthologs for HSERO_RS02315 only