Conservation of cofitness between HSERO_RS01560 and HSERO_RS01935 in Herbaspirillum seropedicae SmR1

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS01560 transporter 1.0 HSERO_RS01935 3-dehydroquinate dehydratase 0.39 3
Dechlorosoma suillum PS 0.79 Dsui_2026 hydrophobe/amphiphile efflux-1 (HAE1) family transporter 0.61 Dsui_0387 3-dehydroquinate dehydratase, type II — —
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS20105 efflux RND transporter permease subunit 0.56 QEN71_RS27160 type II 3-dehydroquinate dehydratase low > 153
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS22515 multidrug efflux RND transporter permease subunit 0.59 BPHYT_RS17005 3-dehydroquinate dehydratase — —
Paraburkholderia bryophila 376MFSha3.1 0.76 H281DRAFT_03190 multidrug efflux pump 0.59 H281DRAFT_06285 3-dehydroquinate dehydratase low > 103
Paraburkholderia graminis OAS925 0.76 ABIE53_004106 multidrug efflux pump 0.59 ABIE53_003566 3-dehydroquinate dehydratase-2 low > 113
Azospirillum brasilense Sp245 0.73 AZOBR_RS28205 transporter 0.51 AZOBR_RS12025 3-dehydroquinate dehydratase — —
Ralstonia sp. UNC404CL21Col 0.73 ABZR87_RS19400 efflux RND transporter permease subunit 0.63 ABZR87_RS01645 type II 3-dehydroquinate dehydratase low > 80
Ralstonia solanacearum PSI07 0.72 RPSI07_RS05175 multidrug efflux RND transporter permease subunit 0.64 RPSI07_RS11260 type II 3-dehydroquinate dehydratase low > 81
Ralstonia solanacearum UW163 0.72 UW163_RS20755 multidrug efflux RND transporter permease subunit 0.64 UW163_RS07640 type II 3-dehydroquinate dehydratase — —
Ralstonia solanacearum IBSBF1503 0.71 RALBFv3_RS18375 multidrug efflux RND transporter permease subunit 0.64 RALBFv3_RS05985 type II 3-dehydroquinate dehydratase — —
Azospirillum sp. SherDot2 0.71 MPMX19_02968 multidrug efflux RND transporter permease subunit OqxB28 0.55 MPMX19_03525 3-dehydroquinate dehydratase low > 112
Ralstonia solanacearum GMI1000 0.71 RS_RS22490 multidrug efflux RND transporter permease subunit 0.63 RS_RS13930 3-dehydroquinate dehydratase 1 — —
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS27685 multidrug efflux RND transporter permease subunit 0.67 RR42_RS32450 3-dehydroquinate dehydratase low > 128
Acidovorax sp. GW101-3H11 0.69 Ac3H11_258 RND multidrug efflux transporter; Acriflavin resistance protein 0.55 Ac3H11_29 3-dehydroquinate dehydratase II (EC 4.2.1.10) low > 79
Variovorax sp. SCN45 0.68 GFF429 RND efflux system, inner membrane transporter 0.55 GFF7499 3-dehydroquinate dehydratase II (EC 4.2.1.10) — —
Magnetospirillum magneticum AMB-1 0.67 AMB_RS09480 multidrug efflux RND transporter permease subunit 0.48 AMB_RS13610 type II 3-dehydroquinate dehydratase — —
Variovorax sp. OAS795 0.67 ABID97_RS17350 efflux RND transporter permease subunit 0.50 ABID97_RS10255 type II 3-dehydroquinate dehydratase — —
Rhizobium sp. OAE497 0.67 ABIE40_RS14875 multidrug efflux RND transporter permease subunit 0.47 ABIE40_RS07500 type II 3-dehydroquinate dehydratase — —
Rhodospirillum rubrum S1H 0.66 Rru_A0886 Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) 0.49 Rru_A2433 3-dehydroquinate dehydratase (NCBI) — —
Pseudomonas sp. RS175 0.66 PFR28_02013 multidrug efflux RND transporter permease subunit OqxB10 0.62 PFR28_05222 3-dehydroquinate dehydratase 1 — —
Sinorhizobium meliloti 1021 0.66 SMc01095 multidrug-efflux system transmembrane protein 0.49 SMc01343 3-dehydroquinate dehydratase — —
Agrobacterium fabrum C58 0.63 Atu2483 AcrB/AcrD/AcrF family protein 0.50 Atu1332 3-dehydroquinate dehydratase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.61 Psyr_4399 3-dehydroquinate dehydratase — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.61 Psyr_4399 3-dehydroquinate dehydratase — —
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_27605 transporter 0.61 AO356_08185 3-dehydroquinate dehydratase — —
Pseudomonas putida KT2440 0.61 PP_3426 Multidrug efflux RND transporter MexF 0.62 PP_0560 3-dehydroquinate dehydratase 1, type II — —
Pseudomonas simiae WCS417 0.61 PS417_13190 transporter 0.59 PS417_02975 3-dehydroquinate dehydratase low > 88
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS14260 efflux RND transporter permease subunit 0.60 PFLU_RS03050 type II 3-dehydroquinate dehydratase — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS14260 efflux RND transporter permease subunit 0.60 PFLU_RS03050 type II 3-dehydroquinate dehydratase — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_23960 transporter 0.62 AO353_13685 3-dehydroquinate dehydratase low > 101
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_3060 Multidrug efflux transporter MexF 0.62 PfGW456L13_50 3-dehydroquinate dehydratase II (EC 4.2.1.10) low > 87
Rhodanobacter denitrificans FW104-10B01 0.61 LRK54_RS08140 multidrug efflux RND transporter permease subunit 0.54 LRK54_RS06795 type II 3-dehydroquinate dehydratase low > 59
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_824 Multidrug efflux transporter MexF 0.62 Pf6N2E2_3510 3-dehydroquinate dehydratase II (EC 4.2.1.10) — —
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_4864 Multidrug efflux transporter MexF 0.62 Pf1N1B4_1307 3-dehydroquinate dehydratase II (EC 4.2.1.10) low > 87
Rhodanobacter denitrificans MT42 0.61 LRK55_RS07890 efflux RND transporter permease subunit 0.54 LRK55_RS06540 type II 3-dehydroquinate dehydratase low > 63
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_14955 oqxB multidrug efflux RND transporter permease subunit 0.59 OKGIIK_16835 aroQ type II 3-dehydroquinate dehydratase low > 52
Pseudomonas stutzeri RCH2 0.60 Psest_2144 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.61 Psest_1021 3-dehydroquinate dehydratase, type II — —
Pseudomonas sp. S08-1 0.60 OH686_01005 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) 0.62 OH686_07585 3-dehydroquinate dehydratase, type II low > 80
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS15400 efflux RND transporter permease subunit 0.57 ABZR86_RS17085 type II 3-dehydroquinate dehydratase low > 74
Shewanella oneidensis MR-1 0.59 SO3492 mexF RND multidrug efflux transporter MexF (NCBI ptt file) 0.54 SO0512 aroQ 3-dehydroquinate dehydratase, type II (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.59 Shewana3_1078 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.54 Shewana3_0511 3-dehydroquinate dehydratase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.58 MIT1002_02998 Efflux pump membrane transporter BepE 0.53 MIT1002_03941 3-dehydroquinate dehydratase — —
Pantoea sp. MT58 0.57 IAI47_10310 multidrug efflux RND transporter permease subunit OqxB 0.46 IAI47_02415 type II 3-dehydroquinate dehydratase — —
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.3477.1 RND efflux system, inner membrane transporter CmeB 0.58 Xcc-8004.681.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) — —
Rahnella sp. WP5 0.55 EX31_RS01495 multidrug efflux RND transporter permease subunit 0.53 EX31_RS10180 type II 3-dehydroquinate dehydratase low > 89
Enterobacter sp. TBS_079 0.55 MPMX20_01155 multidrug efflux RND transporter permease subunit OqxB3 0.57 MPMX20_04162 3-dehydroquinate dehydratase low > 85
Enterobacter asburiae PDN3 0.54 EX28DRAFT_1472 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.56 EX28DRAFT_3306 3-dehydroquinate dehydratase (EC 4.2.1.10) — —
Serratia liquefaciens MT49 0.54 IAI46_13385 efflux RND transporter permease subunit 0.49 IAI46_22745 type II 3-dehydroquinate dehydratase — —
Sphingomonas koreensis DSMZ 15582 0.53 Ga0059261_0436 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.45 Ga0059261_0290 3-dehydroquinate dehydratase (EC 4.2.1.10) low > 68
Lysobacter sp. OAE881 0.53 ABIE51_RS01060 multidrug efflux RND transporter permease subunit 0.59 ABIE51_RS17715 type II 3-dehydroquinate dehydratase low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.45 A4249_RS09925 multidrug efflux RND transporter permease subunit 0.49 A4249_RS07995 type II 3-dehydroquinate dehydratase low > 48
Shewanella loihica PV-4 0.44 Shew_1164 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.53 Shew_3363 3-dehydroquinate dehydratase, type II (RefSeq) low > 60

Not shown: 2 genomes with orthologs for HSERO_RS01560 only; 31 genomes with orthologs for HSERO_RS01935 only