Conservation of cofitness between HGI48_RS06620 and HGI48_RS10095 in Dickeya dianthicola 67-19

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola 67-19 1.0 HGI48_RS06620 galactose-1-epimerase 1.0 HGI48_RS10095 YebC/PmpR family DNA-binding transcriptional regulator 0.64 15
Dickeya dianthicola ME23 0.98 DZA65_RS06975 galactose-1-epimerase 1.00 DZA65_RS10510 YebC/PmpR family DNA-binding transcriptional regulator low > 75
Dickeya dadantii 3937 0.91 DDA3937_RS06600 galactose-1-epimerase 0.98 DDA3937_RS10065 YebC/PmpR family DNA-binding transcriptional regulator low > 74
Pectobacterium carotovorum WPP14 0.67 HER17_RS14770 galactose-1-epimerase 0.95 HER17_RS11855 YebC/PmpR family DNA-binding transcriptional regulator 0.44 37
Serratia liquefaciens MT49 0.63 IAI46_06420 galactose-1-epimerase 0.92 IAI46_14635 YebC/PmpR family DNA-binding transcriptional regulator low > 86
Rahnella sp. WP5 0.58 EX31_RS23565 galactose-1-epimerase 0.89 EX31_RS11685 YebC/PmpR family DNA-binding transcriptional regulator low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF649 Aldose 1-epimerase (EC 5.1.3.3) 0.88 GFF1645 FIG000859: hypothetical protein YebC low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_02957 Aldose 1-epimerase 0.89 OHPLBJKB_01864 putative transcriptional regulatory protein YebC low > 73
Escherichia coli ECRC62 0.57 BNILDI_21155 galM galactose-1-epimerase 0.89 BNILDI_15490 putative transcriptional regulatory protein YebC low > 75
Escherichia coli ECOR38 0.57 HEPCGN_01545 galM galactose-1-epimerase 0.89 HEPCGN_04665 putative transcriptional regulatory protein YebC low > 87
Escherichia coli ECOR27 0.57 NOLOHH_23160 galM galactose-1-epimerase 0.89 NOLOHH_16700 putative transcriptional regulatory protein YebC low > 75
Escherichia coli BW25113 0.57 b0756 galM galactose-1-epimerase (mutarotase) (NCBI) 0.88 b1864 yebC hypothetical protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.57 ECOLIN_RS04025 galactose-1-epimerase 0.89 ECOLIN_RS10380 YebC/PmpR family DNA-binding transcriptional regulator low > 55
Escherichia fergusonii Becca 0.57 EFB2_03350 Aldose 1-epimerase 0.89 EFB2_02078 putative transcriptional regulatory protein YebC low > 86
Erwinia tracheiphila SCR3 0.57 LU632_RS15915 galM galactose-1-epimerase 0.91 LU632_RS13425 YebC/PmpR family DNA-binding transcriptional regulator low > 74
Pantoea sp. MT58 0.57 IAI47_13595 galactose-1-epimerase 0.87 IAI47_08435 YebC/PmpR family DNA-binding transcriptional regulator low > 76
Escherichia coli ECRC102 0.57 NIAGMN_04780 galM galactose-1-epimerase 0.89 NIAGMN_01805 putative transcriptional regulatory protein YebC — —
Escherichia coli ECRC100 0.57 OKFHMN_06730 galM galactose-1-epimerase 0.89 OKFHMN_26255 putative transcriptional regulatory protein YebC low > 80
Escherichia coli ECRC101 0.57 MCAODC_25950 galM galactose-1-epimerase 0.89 MCAODC_19150 putative transcriptional regulatory protein YebC low > 87
Escherichia coli ECRC99 0.57 KEDOAH_21235 galM galactose-1-epimerase 0.89 KEDOAH_01850 putative transcriptional regulatory protein YebC — —
Escherichia coli ECRC98 0.57 JDDGAC_10385 galM galactose-1-epimerase 0.89 JDDGAC_00830 putative transcriptional regulatory protein YebC low > 86
Klebsiella michiganensis M5al 0.56 BWI76_RS08610 galactose-1-epimerase 0.88 BWI76_RS18160 YebC/PmpR family DNA-binding transcriptional regulator — —
Enterobacter asburiae PDN3 0.56 EX28DRAFT_2239 galactose mutarotase 0.88 EX28DRAFT_0693 DNA-binding regulatory protein, YebC/PmpR family low > 76
Enterobacter sp. TBS_079 0.56 MPMX20_01383 Aldose 1-epimerase 0.88 MPMX20_02769 putative transcriptional regulatory protein YebC low > 85
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_07995 galactose-1-epimerase 0.31 CSW01_14085 transcriptional regulator low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS08330 galactose-1-epimerase 0.28 CA265_RS15330 YebC/PmpR family DNA-binding transcriptional regulator low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS04930 aldose epimerase family protein 0.31 ABZR88_RS22270 YebC/PmpR family DNA-binding transcriptional regulator — —
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS15165 galactose mutarotase 0.27 HMPREF1058_RS03510 YebC/PmpR family DNA-binding transcriptional regulator low > 67
Shewanella oneidensis MR-1 0.28 SO0693 galM aldose 1-epimerase (NCBI ptt file) 0.75 SO2432 conserved hypothetical protein TIGR01033 (NCBI ptt file) low > 76
Paraburkholderia sabiae LMG 24235 0.28 QEN71_RS25885 aldose epimerase family protein 0.52 QEN71_RS24395 YebC/PmpR family DNA-binding transcriptional regulator low > 153
Phocaeicola dorei CL03T12C01 0.28 ABI39_RS10920 galactose mutarotase 0.27 ABI39_RS17640 YebC/PmpR family DNA-binding transcriptional regulator low > 72
Bacteroides ovatus ATCC 8483 0.28 BACOVA_03348 aldose 1-epimerase 0.27 BACOVA_02249 DNA-binding regulatory protein, YebC/PmpR family low > 94
Shewanella sp. ANA-3 0.28 Shewana3_3579 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.74 Shewana3_1954 hypothetical protein (RefSeq) low > 73
Bacteroides thetaiotaomicron VPI-5482 0.28 BT3529 aldose 1-epimerase precursor (NCBI ptt file) 0.27 BT0627 conserved hypothetical protein, with a conserved domain of unknown function (NCBI ptt file) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_0697 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.29 Echvi_1239 DNA-binding regulatory protein, YebC/PmpR family low > 79
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS08705 aldose epimerase family protein 0.26 HMPREF1078_RS09835 YebC/PmpR family DNA-binding transcriptional regulator low > 61
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS04435 galactose mutarotase 0.26 HMPREF1181_RS16620 YebC/PmpR family DNA-binding transcriptional regulator low > 56
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS01235 aldose epimerase family protein 0.36 ABZR86_RS10850 YebC/PmpR family DNA-binding transcriptional regulator — —
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_01485 aldose 1-epimerase 0.36 CCNA_03352 YebC/PmpR transcriptional regulator low > 67
Caulobacter crescentus NA1000 0.26 CCNA_01485 aldose 1-epimerase 0.36 CCNA_03352 YebC/PmpR transcriptional regulator low > 66
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS18210 aldose epimerase family protein 0.53 ABZR87_RS15405 YebC/PmpR family DNA-binding transcriptional regulator low > 80
Rhodanobacter sp. FW510-T8 0.26 OKGIIK_12490 Aldose 1-epimerase 0.44 OKGIIK_01830 tACO1 YebC/PmpR family DNA-binding transcriptional regulator low > 52
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_09120 galactose-1-epimerase 0.42 CA264_01650 YebC/PmpR family DNA-binding transcriptional regulator low > 74
Paraburkholderia bryophila 376MFSha3.1 0.26 H281DRAFT_03874 aldose 1-epimerase (EC 5.1.3.3) 0.54 H281DRAFT_04522 DNA-binding regulatory protein, YebC/PmpR family — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_2369 aldose 1-epimerase 0.68 Psyr_1407 Protein of unknown function DUF28 low > 86
Herbaspirillum seropedicae SmR1 0.26 HSERO_RS22450 aldose 1-epimerase 0.54 HSERO_RS17750 transcriptional regulator — —
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_2369 aldose 1-epimerase 0.68 Psyr_1407 Protein of unknown function DUF28 low > 86
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_84 Aldose 1-epimerase (EC 5.1.3.3) 0.65 Pf1N1B4_640 FIG000859: hypothetical protein YebC — —
Lysobacter sp. OAE881 0.25 ABIE51_RS10905 aldose epimerase family protein 0.51 ABIE51_RS05035 YebC/PmpR family DNA-binding transcriptional regulator low > 62
Pseudomonas sp. RS175 0.25 PFR28_01305 Aldose 1-epimerase 0.68 PFR28_03415 Transcriptional regulatory protein PmpR low > 88
Shewanella amazonensis SB2B 0.25 Sama_0535 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.71 Sama_1842 hypothetical protein (RefSeq) low > 62
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS32835 aldose 1-epimerase 0.54 BPHYT_RS06410 transcriptional regulator — —
Shewanella loihica PV-4 0.24 Shew_3272 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.75 Shew_2078 hypothetical protein (RefSeq) — —
Azospirillum sp. SherDot2 0.24 MPMX19_06214 Aldose 1-epimerase 0.45 MPMX19_00695 putative transcriptional regulatory protein low > 112
Pseudomonas fluorescens SBW25 0.24 PFLU_RS11665 galactose mutarotase 0.64 PFLU_RS24100 YebC/PmpR family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS11665 galactose mutarotase 0.64 PFLU_RS24100 YebC/PmpR family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_01315 aldose epimerase 0.68 AO356_18010 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_2135 Aldose 1-epimerase (EC 5.1.3.3) 0.68 Pf6N2E2_5534 FIG000859: hypothetical protein YebC low > 103
Pseudomonas simiae WCS417 0.24 PS417_11040 aldose epimerase 0.64 PS417_22460 hypothetical protein — —
Variovorax sp. OAS795 0.23 ABID97_RS06780 aldose epimerase family protein 0.49 ABID97_RS16740 YebC/PmpR family DNA-binding transcriptional regulator low > 91
Sinorhizobium meliloti 1021 0.23 SMc03798 aldose 1-epimerase 0.45 SMc03969 hypothetical protein low > 103
Alteromonas macleodii MIT1002 0.22 MIT1002_00187 Aldose 1-epimerase precursor 0.32 MIT1002_00845 putative transcriptional regulatory protein YeeN low > 70
Variovorax sp. SCN45 0.22 GFF5187 Aldose 1-epimerase (EC 5.1.3.3) 0.49 GFF303 Probable transcriptional regulatory protein YebC low > 127
Agrobacterium fabrum C58 0.22 Atu2719 aldose epimerase 0.44 Atu3727 hypothetical protein low > 89
Rhizobium sp. OAE497 0.21 ABIE40_RS18585 aldose epimerase family protein 0.43 ABIE40_RS15665 YebC/PmpR family DNA-binding transcriptional regulator low > 107
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.3776.1 Aldose 1-epimerase (EC 5.1.3.3) 0.49 Xcc-8004.1434.1 FIG000859: hypothetical protein YebC low > 74
Fusobacterium nucleatum SB010 0.21 HUW76_01285 galactose mutarotase 0.49 HUW76_01460 YebC/PmpR family DNA-binding transcriptional regulator low > 35
Phaeobacter inhibens DSM 17395 0.18 PGA1_262p00390 aldose 1-epimerase 0.45 PGA1_c21770 DNA-binding regulatory protein, YebC/PmpR family — —
Acidovorax sp. GW101-3H11 0.18 Ac3H11_3951 Aldose 1-epimerase (EC 5.1.3.3) 0.48 Ac3H11_2422 FIG000859: hypothetical protein — —
Azospirillum brasilense Sp245 0.17 AZOBR_RS31270 aldose 1-epimerase 0.46 AZOBR_RS09035 transcriptional regulator low > 97
Hydrogenophaga sp. GW460-11-11-14-LB1 0.16 GFF791 Aldose 1-epimerase (EC 5.1.3.3) 0.49 GFF4523 FIG000859: hypothetical protein YebC low > 90
Dinoroseobacter shibae DFL-12 0.16 Dshi_2683 Aldose 1-epimerase (RefSeq) 0.42 Dshi_2762 protein of unknown function DUF28 (RefSeq) low > 64

Not shown: 0 genomes with orthologs for HGI48_RS06620 only; 30 genomes with orthologs for HGI48_RS10095 only