Conservation of cofitness between HER17_RS17265 and HER17_RS21530 in Pectobacterium carotovorum WPP14

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS17265 oxygen-dependent coproporphyrinogen oxidase 1.0 HER17_RS21530 ribokinase 0.92 4
Dickeya dadantii 3937 0.81 DDA3937_RS04365 oxygen-dependent coproporphyrinogen oxidase 0.82 DDA3937_RS00050 ribokinase
Rahnella sp. WP5 0.80 EX31_RS20260 oxygen-dependent coproporphyrinogen oxidase 0.74 EX31_RS06190 ribokinase low > 89
Dickeya dianthicola 67-19 0.80 HGI48_RS04355 oxygen-dependent coproporphyrinogen oxidase 0.81 HGI48_RS21315 ribokinase low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS04275 oxygen-dependent coproporphyrinogen oxidase 0.81 DZA65_RS22295 ribokinase
Serratia liquefaciens MT49 0.78 IAI46_18545 oxygen-dependent coproporphyrinogen oxidase 0.79 IAI46_25055 ribokinase low > 86
Pantoea sp. MT58 0.76 IAI47_05360 oxygen-dependent coproporphyrinogen oxidase 0.71 IAI47_00370 ribokinase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF2066 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.70 GFF1705 Ribokinase (EC 2.7.1.15) low > 78
Escherichia coli ECOR27 0.73 NOLOHH_13775 hemF oxygen-dependent coproporphyrinogen oxidase 0.71 NOLOHH_06865 rbsK ribokinase low > 75
Escherichia coli ECRC62 0.73 BNILDI_12640 hemF oxygen-dependent coproporphyrinogen oxidase 0.71 BNILDI_04660 rbsK ribokinase low > 75
Escherichia coli BL21 0.73 ECD_02336 coproporphyrinogen III oxidase 0.71 ECD_03638 ribokinase low > 61
Escherichia coli Nissle 1917 0.73 ECOLIN_RS13965 oxygen-dependent coproporphyrinogen oxidase 0.71 ECOLIN_RS21570 ribokinase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_01286 Oxygen-dependent coproporphyrinogen-III oxidase 0.71 OHPLBJKB_04301 Ribokinase low > 73
Escherichia coli BW25113 0.73 b2436 hemF coproporphyrinogen III oxidase (NCBI) 0.71 b3752 rbsK ribokinase (NCBI) low > 76
Escherichia coli ECOR38 0.73 HEPCGN_21270 hemF oxygen-dependent coproporphyrinogen oxidase 0.70 HEPCGN_13440 rbsK ribokinase low > 87
Enterobacter sp. TBS_079 0.72 MPMX20_03323 Oxygen-dependent coproporphyrinogen-III oxidase 0.69 MPMX20_04615 Ribokinase low > 85
Shewanella loihica PV-4 0.72 Shew_3729 coproporphyrinogen III oxidase (RefSeq) 0.41 Shew_0696 ribokinase (RefSeq) low > 60
Enterobacter asburiae PDN3 0.72 EX28DRAFT_0199 coproporphyrinogen oxidase (EC 1.3.3.3) 0.66 EX28DRAFT_4028 ribokinase low > 76
Escherichia fergusonii Becca 0.72 EFB2_01443 Oxygen-dependent coproporphyrinogen-III oxidase 0.71 EFB2_04881 Ribokinase low > 86
Escherichia coli ECRC102 0.71 NIAGMN_19865 hemF oxygen-dependent coproporphyrinogen oxidase 0.71 NIAGMN_12485 rbsK ribokinase
Escherichia coli ECRC100 0.71 OKFHMN_22095 hemF oxygen-dependent coproporphyrinogen oxidase 0.71 OKFHMN_14730 rbsK ribokinase low > 80
Escherichia coli ECRC101 0.71 MCAODC_12625 hemF oxygen-dependent coproporphyrinogen oxidase 0.71 MCAODC_05235 rbsK ribokinase low > 87
Escherichia coli ECRC98 0.71 JDDGAC_26045 hemF oxygen-dependent coproporphyrinogen oxidase 0.71 JDDGAC_18350 rbsK ribokinase low > 86
Escherichia coli ECRC99 0.71 KEDOAH_06125 hemF oxygen-dependent coproporphyrinogen oxidase 0.71 KEDOAH_13420 rbsK ribokinase
Shewanella sp. ANA-3 0.71 Shewana3_0041 coproporphyrinogen III oxidase (RefSeq) 0.41 Shewana3_3477 ribokinase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.71 SO0038 hemF coproporphyrinogen III oxidase, aerobic (NCBI ptt file) 0.37 SO0810 rbsK ribokinase (NCBI ptt file) low > 76
Klebsiella michiganensis M5al 0.70 BWI76_RS20740 coproporphyrinogen III oxidase 0.70 BWI76_RS00290 Ribokinase (EC 2.7.1.15) (from data) low > 92
Alteromonas macleodii MIT1002 0.69 MIT1002_00026 Coproporphyrinogen-III oxidase, aerobic 0.25 MIT1002_02988 Ribokinase
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_1907 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.35 Pf1N1B4_6031 Ribokinase (EC 2.7.1.15) (from data)
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_645 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.34 PfGW456L13_3908 Ribokinase (EC 2.7.1.15)
Pseudomonas putida KT2440 0.66 PP_0073 Coproporphyrinogen-III oxidase, aerobic 0.34 PP_2458 ribokinase
Pseudomonas sp. RS175 0.66 PFR28_04656 Oxygen-dependent coproporphyrinogen-III oxidase 0.37 PFR28_02733 Ribokinase
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_10665 coproporphyrinogen III oxidase 0.33 AO353_20835 Ribokinase (EC 2.7.1.15) (from data)
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_0024 coproporphyrinogen oxidase 0.39 Psyr_2155 Carbohydrate kinase, PfkB
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_0024 coproporphyrinogen oxidase 0.39 Psyr_2155 Carbohydrate kinase, PfkB
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_11310 coproporphyrinogen III oxidase 0.34 AO356_00950 Ribokinase (EC 2.7.1.15) (from data)
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_00275 coproporphyrinogen III oxidase 0.54 CSW01_14665 ribokinase
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_4129 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.35 Pf6N2E2_165 Ribokinase (EC 2.7.1.15)
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS13525 oxygen-dependent coproporphyrinogen oxidase 0.32 ABZR86_RS15070 ribokinase
Rhodanobacter denitrificans MT42 0.65 LRK55_RS09455 oxygen-dependent coproporphyrinogen oxidase 0.32 LRK55_RS08275 ribokinase 0.46 24
Pseudomonas fluorescens SBW25 0.65 PFLU_RS00115 oxygen-dependent coproporphyrinogen oxidase 0.34 PFLU_RS20360 ribokinase
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_16050 hemF oxygen-dependent coproporphyrinogen oxidase 0.30 OKGIIK_15305 rbsK ribokinase
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS00115 oxygen-dependent coproporphyrinogen oxidase 0.34 PFLU_RS20360 ribokinase
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS09795 oxygen-dependent coproporphyrinogen oxidase 0.32 LRK54_RS08510 ribokinase
Pseudomonas simiae WCS417 0.64 PS417_00120 coproporphyrinogen III oxidase 0.36 PS417_18385 ribokinase
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS17765 coproporphyrinogen III oxidase 0.35 HSERO_RS11500 Ribokinase (EC 2.7.1.15) (from data)
Ralstonia solanacearum PSI07 0.62 RPSI07_RS13675 oxygen-dependent coproporphyrinogen oxidase 0.35 RPSI07_RS19230 ribokinase
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS06400 oxygen-dependent coproporphyrinogen-III oxidase 0.40 BPHYT_RS20695 ribokinase low > 109
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS24405 oxygen-dependent coproporphyrinogen oxidase 0.34 QEN71_RS35905 ribokinase
Paraburkholderia graminis OAS925 0.62 ABIE53_001544 coproporphyrinogen III oxidase 0.33 ABIE53_002321 ribokinase low > 113
Ralstonia solanacearum UW163 0.62 UW163_RS10120 coproporphyrinogen III oxidase 0.34 UW163_RS11700 ribokinase
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.5101.1 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.24 Xcc-8004.4302.1 Ribokinase (EC 2.7.1.15)
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS03550 coproporphyrinogen III oxidase 0.34 RALBFv3_RS14235 ribokinase
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04520 coproporphyrinogen oxidase 0.34 H281DRAFT_05229 ribokinase
Ralstonia solanacearum GMI1000 0.62 RS_RS11000 coproporphyrinogen III oxidase 0.35 RS_RS05015 ribokinase
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS15415 oxygen-dependent coproporphyrinogen oxidase 0.34 ABZR87_RS09950 ribokinase
Lysobacter sp. OAE881 0.61 ABIE51_RS02020 oxygen-dependent coproporphyrinogen oxidase 0.25 ABIE51_RS16435 ribokinase
Variovorax sp. OAS795 0.59 ABID97_RS16730 oxygen-dependent coproporphyrinogen oxidase 0.31 ABID97_RS24775 ribokinase
Variovorax sp. SCN45 0.59 GFF301 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.32 GFF2136 Ribokinase (EC 2.7.1.15)
Acidovorax sp. GW101-3H11 0.59 Ac3H11_2420 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.29 Ac3H11_1839 Ribokinase (EC 2.7.1.15)
Acinetobacter radioresistens SK82 0.58 MPMX26_02746 Oxygen-dependent coproporphyrinogen-III oxidase 0.11 MPMX26_01273 Ribokinase
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_05715 coproporphyrinogen III oxidase 0.24 CA264_03275 ribokinase
Azospirillum sp. SherDot2 0.34 MPMX19_05010 Oxygen-dependent coproporphyrinogen-III oxidase 0.31 MPMX19_02957 Ribokinase
Phaeobacter inhibens DSM 17395 0.33 PGA1_c29970 coproporphyrinogen 3 oxidase, aerobic 0.16 PGA1_c34980 putative pfkB family carbohydrate kinase
Bosea sp. OAE506 0.33 ABIE41_RS11175 oxygen-dependent coproporphyrinogen oxidase 0.24 ABIE41_RS03745 ribokinase
Caulobacter crescentus NA1000 0.32 CCNA_00540 coproporphyrinogen III oxidase 0.24 CCNA_01001 ribokinase
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_00540 coproporphyrinogen III oxidase 0.24 CCNA_01001 ribokinase
Sinorhizobium meliloti 1021 0.31 SMc00180 coproporphyrinogen III oxidase 0.26 SMc01103 Ribokinase (EC 2.7.1.15) (from data)
Agrobacterium fabrum C58 0.30 Atu2247 coproporphyrinogen III oxidase 0.30 Atu4847 ribokinase
Rhizobium sp. OAE497 0.30 ABIE40_RS13225 oxygen-dependent coproporphyrinogen oxidase 0.28 ABIE40_RS01880 ribokinase
Sphingomonas koreensis DSMZ 15582 0.29 Ga0059261_3217 coproporphyrinogen oxidase (EC 1.3.3.3) 0.20 Ga0059261_0568 Sugar kinases, ribokinase family

Not shown: 14 genomes with orthologs for HER17_RS17265 only; 12 genomes with orthologs for HER17_RS21530 only