Conservation of cofitness between HER17_RS15240 and HER17_RS11055 in Pectobacterium carotovorum WPP14

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 HER17_RS11055 patatin-like phospholipase RssA 0.58 11
Dickeya dadantii 3937 0.98 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.72 DDA3937_RS10335 patatin-like phospholipase RssA — —
Dickeya dianthicola ME23 0.98 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.72 DZA65_RS10820 patatin-like phospholipase RssA low > 75
Dickeya dianthicola 67-19 0.97 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.72 HGI48_RS10345 patatin-like phospholipase RssA — —
Serratia liquefaciens MT49 0.95 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.68 IAI46_14255 patatin-like phospholipase RssA low > 86
Rahnella sp. WP5 0.95 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.71 EX31_RS10105 patatin-like phospholipase RssA low > 89
Pantoea sp. MT58 0.92 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.70 IAI47_09020 patatin-like phospholipase RssA low > 76
Enterobacter asburiae PDN3 0.91 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.66 EX28DRAFT_0860 Predicted esterase of the alpha-beta hydrolase superfamily — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.64 GFF2754 UPF0028 protein YchK low > 78
Escherichia coli BL21 0.90 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.65 ECD_01210 putative patatin-like family phospholipase — —
Escherichia coli Nissle 1917 0.90 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.65 ECOLIN_RS07470 patatin-like phospholipase RssA — —
Enterobacter sp. TBS_079 0.90 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.66 MPMX20_02594 putative NTE family protein low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.65 OHPLBJKB_02451 putative NTE family protein — —
Escherichia coli BW25113 0.90 b0636 ybeA hypothetical protein (NCBI) 0.65 b1234 rssA conserved protein (RefSeq) 0.31 30
Klebsiella michiganensis M5al 0.90 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 BWI76_RS17280 patatin family protein low > 92
Escherichia coli ECRC62 0.90 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.65 BNILDI_18625 rssA patatin-like phospholipase RssA — —
Escherichia coli ECOR38 0.90 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 HEPCGN_25040 rssA patatin-like phospholipase RssA low > 87
Escherichia coli ECRC100 0.90 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 OKFHMN_28580 rssA patatin-like phospholipase RssA low > 80
Escherichia fergusonii Becca 0.90 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.66 EFB2_02692 putative NTE family protein low > 86
Escherichia coli ECRC99 0.90 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 KEDOAH_25575 rssA patatin-like phospholipase RssA — —
Escherichia coli ECOR27 0.90 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 NOLOHH_20470 rssA patatin-like phospholipase RssA low > 75
Escherichia coli ECRC98 0.90 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 JDDGAC_05995 rssA patatin-like phospholipase RssA — —
Escherichia coli ECRC101 0.90 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 MCAODC_21680 rssA patatin-like phospholipase RssA low > 87
Escherichia coli ECRC102 0.90 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 NIAGMN_27655 rssA patatin-like phospholipase RssA — —
Shewanella loihica PV-4 0.81 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.43 Shew_2451 patatin (RefSeq) low > 60
Shewanella amazonensis SB2B 0.80 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.45 Sama_1274 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.79 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.41 Shewana3_2605 patatin (RefSeq) low > 73
Shewanella oneidensis MR-1 0.79 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.40 SO2836 conserved hypothetical protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.79 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.36 MIT1002_02140 NTE family protein RssA — —
Marinobacter adhaerens HP15 0.67 HP15_604 conserved hypothetical protein CHP00246 0.27 HP15_1840 patatin low > 73
Pseudomonas sp. S08-1 0.63 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.28 OH686_01880 Bacterial patatin-like phospholipase domain containing protein low > 80
Pseudomonas stutzeri RCH2 0.61 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.28 Psest_2463 Predicted esterase of the alpha-beta hydrolase superfamily low > 67
Pseudomonas putida KT2440 0.61 PP_4808 23S rRNA m3psi1915 methyltransferase 0.27 PP_2305 conserved protein of unknown function low > 96
Pseudomonas sp. RS175 0.61 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.26 PFR28_00944 putative NTE family protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.26 Pf6N2E2_2489 UPF0028 protein YchK low > 103
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_15305 50S rRNA methyltransferase 0.26 AO356_03290 alpha/beta hydrolase low > 104
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.28 Pf1N1B4_310 UPF0028 protein YchK — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_06480 50S rRNA methyltransferase 0.27 AO353_18940 alpha/beta hydrolase low > 101
Pseudomonas simiae WCS417 0.61 PS417_24730 50S rRNA methyltransferase 0.28 PS417_08310 alpha/beta hydrolase — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.28 PFLU_RS08250 alpha/beta hydrolase low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.28 PFLU_RS08250 alpha/beta hydrolase low > 109
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.28 PfGW456L13_2206 UPF0028 protein YchK low > 87
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.27 OKGIIK_15480 Serine protease low > 52
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 QEN71_RS23405 patatin-like phospholipase family protein low > 153
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 ABZR86_RS14850 patatin-like phospholipase family protein low > 74
Paraburkholderia graminis OAS925 0.50 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.31 ABIE53_001764 NTE family protein — —
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.28 LRK54_RS08715 patatin-like phospholipase family protein low > 59
Rhodanobacter denitrificans MT42 0.50 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.28 LRK55_RS08480 patatin-like phospholipase family protein low > 63
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.30 BPHYT_RS07670 patatin — —
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.31 H281DRAFT_06473 NTE family protein low > 103
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS04710 50S rRNA methyltransferase 0.21 RR42_RS13360 esterase low > 128
Variovorax sp. SCN45 0.48 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.34 GFF4394 FIG00613342: Bacterial patatin-like phospholipase domain containing protein low > 127
Ralstonia solanacearum PSI07 0.46 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.21 RPSI07_RS18315 esterase low > 81
Ralstonia solanacearum GMI1000 0.46 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.22 RS_RS05875 esterase — —
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.21 ABZR87_RS10705 patatin-like phospholipase family protein low > 80
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.21 RALBFv3_RS15060 esterase low > 76
Ralstonia solanacearum UW163 0.45 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.21 UW163_RS12530 esterase — —
Dechlorosoma suillum PS 0.45 Dsui_0451 hypothetical protein 0.36 Dsui_2541 putative esterase of the alpha-beta hydrolase superfamily low > 51
Bacteroides thetaiotaomicron VPI-5482 0.29 BT1562 conserved hypothetical protein (NCBI ptt file) 0.22 BT1016 conserved protein with a conserved patatin-like phospholipase domain (NCBI ptt file) low > 81
Sinorhizobium meliloti 1021 0.28 SMc03781 rRNA large subunit methyltransferase 0.28 SMc01003 hypothetical protein low > 103
Azospirillum sp. SherDot2 0.27 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H 0.36 MPMX19_00849 hypothetical protein low > 112
Dinoroseobacter shibae DFL-12 0.27 Dshi_0088 protein of unknown function DUF163 (RefSeq) 0.15 Dshi_3310 Patatin (RefSeq) low > 64
Rhizobium sp. OAE497 0.27 ABIE40_RS18965 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 ABIE40_RS09730 patatin-like phospholipase family protein low > 107
Azospirillum brasilense Sp245 0.26 AZOBR_RS04060 50S rRNA methyltransferase 0.35 AZOBR_RS21865 lysophospholipase — —
Agrobacterium fabrum C58 0.24 Atu2776 hypothetical protein 0.29 Atu1751 hypothetical protein low > 89
Rhodopseudomonas palustris CGA009 0.22 TX73_000870 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 TX73_017640 patatin-like phospholipase family protein low > 86

Not shown: 31 genomes with orthologs for HER17_RS15240 only; 3 genomes with orthologs for HER17_RS11055 only