Conservation of cofitness between PS417_26685 and PS417_02975 in Pseudomonas simiae WCS417

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_26685 hypothetical protein 1.0 PS417_02975 3-dehydroquinate dehydratase 0.31 2
Pseudomonas fluorescens SBW25 0.98 PFLU_RS28330 YqgE/AlgH family protein 0.99 PFLU_RS03050 type II 3-dehydroquinate dehydratase
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS28330 YqgE/AlgH family protein 0.99 PFLU_RS03050 type II 3-dehydroquinate dehydratase
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_4609 UPF0301 protein YqgE 0.92 Pf6N2E2_3510 3-dehydroquinate dehydratase II (EC 4.2.1.10)
Pseudomonas sp. RS175 0.89 PFR28_04234 hypothetical protein 0.92 PFR28_05222 3-dehydroquinate dehydratase 1
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_13465 hypothetical protein 0.94 AO356_08185 3-dehydroquinate dehydratase
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_2350 UPF0301 protein YqgE 0.92 Pf1N1B4_1307 3-dehydroquinate dehydratase II (EC 4.2.1.10) low > 87
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_1019 UPF0301 protein YqgE 0.93 PfGW456L13_50 3-dehydroquinate dehydratase II (EC 4.2.1.10) low > 87
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_08120 hypothetical protein 0.92 AO353_13685 3-dehydroquinate dehydratase low > 101
Pseudomonas putida KT2440 0.76 PP_4995 putative protein possibly involved in the control of exopolysaccharide production 0.89 PP_0560 3-dehydroquinate dehydratase 1, type II
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_0485 Protein of unknown function DUF179 0.91 Psyr_4399 3-dehydroquinate dehydratase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_0485 Protein of unknown function DUF179 0.91 Psyr_4399 3-dehydroquinate dehydratase
Pseudomonas sp. S08-1 0.73 OH686_10925 UPF0301 protein YqgE 0.92 OH686_07585 3-dehydroquinate dehydratase, type II low > 80
Pseudomonas stutzeri RCH2 0.68 Psest_0294 Putative transcriptional regulator 0.87 Psest_1021 3-dehydroquinate dehydratase, type II
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS04220 hypothetical protein 0.65 BPHYT_RS17005 3-dehydroquinate dehydratase
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_04814 putative transcriptional regulator 0.65 H281DRAFT_06285 3-dehydroquinate dehydratase low > 103
Marinobacter adhaerens HP15 0.47 HP15_3510 transcriptional regulator 0.65 HP15_3220 dehydroquinase, class II
Paraburkholderia graminis OAS925 0.46 ABIE53_001128 putative transcriptional regulator 0.65 ABIE53_003566 3-dehydroquinate dehydratase-2 low > 113
Ralstonia solanacearum GMI1000 0.46 RS_RS03395 YqgE/AlgH family protein 0.62 RS_RS13930 3-dehydroquinate dehydratase 1
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS12610 DUF179 domain-containing protein 0.64 RALBFv3_RS05985 type II 3-dehydroquinate dehydratase
Ralstonia solanacearum UW163 0.46 UW163_RS00955 DUF179 domain-containing protein 0.64 UW163_RS07640 type II 3-dehydroquinate dehydratase
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS15875 hypothetical protein 0.67 RR42_RS17690 3-dehydroquinate dehydratase low > 128
Ralstonia solanacearum PSI07 0.46 RPSI07_RS20650 YqgE/AlgH family protein 0.63 RPSI07_RS11260 type II 3-dehydroquinate dehydratase low > 81
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS25795 YqgE/AlgH family protein 0.61 QEN71_RS27160 type II 3-dehydroquinate dehydratase low > 153
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS08610 YqgE/AlgH family protein 0.63 ABZR87_RS01645 type II 3-dehydroquinate dehydratase low > 80
Castellaniella sp019104865 MT123 0.44 ABCV34_RS10730 YqgE/AlgH family protein 0.46 ABCV34_RS11545 type II 3-dehydroquinate dehydratase
Lysobacter sp. OAE881 0.43 ABIE51_RS16025 YqgE/AlgH family protein 0.66 ABIE51_RS17715 type II 3-dehydroquinate dehydratase low > 62
Alteromonas macleodii MIT1002 0.43 MIT1002_03056 hypothetical protein 0.62 MIT1002_03941 3-dehydroquinate dehydratase
Dechlorosoma suillum PS 0.43 Dsui_0593 putative transcriptional regulator 0.64 Dsui_0387 3-dehydroquinate dehydratase, type II
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1720.1 UPF0301 protein YqgE 0.67 Xcc-8004.681.1 3-dehydroquinate dehydratase II (EC 4.2.1.10)
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS10380 YqgE/AlgH family protein 0.64 ABZR86_RS17085 type II 3-dehydroquinate dehydratase
Pectobacterium carotovorum WPP14 0.41 HER17_RS02630 YqgE/AlgH family protein 0.57 HER17_RS20195 type II 3-dehydroquinate dehydratase low > 75
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS04210 YqgE/AlgH family protein 0.62 LRK54_RS06795 type II 3-dehydroquinate dehydratase low > 59
Rhodanobacter denitrificans MT42 0.41 LRK55_RS03980 YqgE/AlgH family protein 0.62 LRK55_RS06540 type II 3-dehydroquinate dehydratase
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS02315 transcriptional regulator 0.51 HSERO_RS01935 3-dehydroquinate dehydratase low > 78
Variovorax sp. SCN45 0.40 GFF2157 UPF0301 protein YqgE 0.63 GFF7499 3-dehydroquinate dehydratase II (EC 4.2.1.10)
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_02485 YqgE/AlgH family protein 0.62 CSW01_01515 type II 3-dehydroquinate dehydratase low > 62
Dickeya dadantii 3937 0.40 DDA3937_RS18565 YqgE/AlgH family protein 0.55 DDA3937_RS01405 type II 3-dehydroquinate dehydratase
Dickeya dianthicola ME23 0.40 DZA65_RS19635 YqgE/AlgH family protein 0.54 DZA65_RS01385 type II 3-dehydroquinate dehydratase
Serratia liquefaciens MT49 0.40 IAI46_21395 YqgE/AlgH family protein 0.58 IAI46_22745 type II 3-dehydroquinate dehydratase
Shewanella sp. ANA-3 0.40 Shewana3_1200 hypothetical protein (RefSeq) 0.58 Shewana3_0511 3-dehydroquinate dehydratase (RefSeq) low > 73
Erwinia tracheiphila SCR3 0.39 LU632_RS05475 YqgE/AlgH family protein 0.56 LU632_RS21475 aroQ type II 3-dehydroquinate dehydratase
Dickeya dianthicola 67-19 0.39 HGI48_RS18500 YqgE/AlgH family protein 0.54 HGI48_RS01325 type II 3-dehydroquinate dehydratase
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_11085 algH YqgE/AlgH family protein 0.63 OKGIIK_16835 aroQ type II 3-dehydroquinate dehydratase low > 52
Shewanella amazonensis SB2B 0.39 Sama_2472 putative transcriptional regulator (RefSeq) 0.60 Sama_3194 3-dehydroquinate dehydratase (RefSeq) low > 62
Pantoea sp. MT58 0.39 IAI47_03610 YqgE/AlgH family protein 0.59 IAI47_02415 type II 3-dehydroquinate dehydratase
Shewanella oneidensis MR-1 0.38 SO3346 conserved hypothetical protein (NCBI ptt file) 0.58 SO0512 aroQ 3-dehydroquinate dehydratase, type II (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.37 EX28DRAFT_2986 Putative transcriptional regulator 0.63 EX28DRAFT_3306 3-dehydroquinate dehydratase (EC 4.2.1.10)
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF648 UPF0301 protein YqgE 0.43 GFF5233 3-dehydroquinate dehydratase II (EC 4.2.1.10)
Enterobacter sp. TBS_079 0.37 MPMX20_03806 hypothetical protein 0.63 MPMX20_04162 3-dehydroquinate dehydratase low > 85
Shewanella loihica PV-4 0.37 Shew_1144 hypothetical protein (RefSeq) 0.61 Shew_3363 3-dehydroquinate dehydratase, type II (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0191 Putative transcriptional regulator 0.59 B158DRAFT_0157 3-dehydroquinate dehydratase (EC 4.2.1.10)
Rahnella sp. WP5 0.35 EX31_RS02670 YqgE/AlgH family protein 0.58 EX31_RS12215 type II 3-dehydroquinate dehydratase low > 89
Acinetobacter radioresistens SK82 0.35 MPMX26_00238 hypothetical protein 0.63 MPMX26_01371 3-dehydroquinate dehydratase
Bacteroides thetaiotaomicron VPI-5482 0.21 BT1078 putative transcriptional regulator (NCBI ptt file) 0.45 BT2842 3-dehydroquinate dehydratase (NCBI ptt file)
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_3442 Putative transcriptional regulator 0.42 Echvi_1810 3-dehydroquinate dehydratase, type II
Bacteroides ovatus ATCC 8483 0.19 BACOVA_04061 putative ACR, COG1678 0.46 BACOVA_02122 3-dehydroquinate dehydratase, type II low > 94

Not shown: 33 genomes with orthologs for PS417_26685 only; 7 genomes with orthologs for PS417_02975 only