Conservation of cofitness between Psest_0536 and Psest_0537 in Pseudomonas stutzeri RCH2

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0536 thiamine-phosphate pyrophosphorylase 1.0 Psest_0537 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.60 4
Pseudomonas sp. S08-1 0.74 OH686_09190 Thiamin-phosphate pyrophosphorylase 0.85 OH686_09185 Hydroxymethylpyrimidine phosphate kinase ThiD 0.90 4
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_2717 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.72 Pf1N1B4_2718 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) — —
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_06355 thiamine-phosphate pyrophosphorylase 0.79 AO353_06350 hydrogenase 0.58 1
Pseudomonas sp. RS175 0.68 PFR28_03844 Thiamine-phosphate synthase 0.75 PFR28_03843 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.91 3
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_15430 thiamine-phosphate pyrophosphorylase 0.79 AO356_15435 hydrogenase 0.32 7
Pseudomonas simiae WCS417 0.68 PS417_24605 thiamine-phosphate pyrophosphorylase 0.82 PS417_24600 hydrogenase 0.59 2
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS26535 thiamine phosphate synthase 0.82 PFLU_RS26530 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.93 1
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_1384 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.78 PfGW456L13_1385 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.39 19
Pseudomonas fluorescens SBW25 0.68 PFLU_RS26535 thiamine phosphate synthase 0.82 PFLU_RS26530 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.83 25
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_5023 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.72 Pf6N2E2_5024 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.41 11
Pseudomonas putida KT2440 0.65 PP_4783 Thiamine-phosphate synthase 0.79 PP_4782 Phosphomethylpyrimidine kinase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_4341 thiamine-phosphate diphosphorylase 0.77 Psyr_4340 phosphomethylpyrimidine kinase, putative 0.88 2
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_4341 thiamine-phosphate diphosphorylase 0.77 Psyr_4340 phosphomethylpyrimidine kinase, putative 0.92 1
Marinobacter adhaerens HP15 0.45 HP15_348 thiamine-phosphate pyrophosphorylase 0.24 HP15_349 phosphomethylpyrimidine kinase — —
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS17410 thiamine phosphate synthase 0.22 ABZR86_RS00760 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_17095 Thiamine-phosphate synthase 0.19 OKGIIK_03835 Bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 52
Lysobacter sp. OAE881 0.38 ABIE51_RS17410 thiamine phosphate synthase 0.21 ABIE51_RS07970 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.1132.1 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.23 Xcc-8004.3091.1 hypothetical protein low > 74
Dechlorosoma suillum PS 0.33 Dsui_0663 thiamine-phosphate pyrophosphorylase 0.41 Dsui_0662 phosphomethylpyrimidine kinase — —
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS02140 thiamine-phosphate synthase 0.29 HSERO_RS02135 phosphomethylpyrimidine kinase 0.61 1
Acinetobacter radioresistens SK82 0.31 MPMX26_01022 Thiamine-phosphate synthase 0.37 MPMX26_02438 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase — —
Castellaniella sp019104865 MT123 0.30 ABCV34_RS10745 thiamine phosphate synthase 0.20 ABCV34_RS14505 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Azospirillum brasilense Sp245 0.27 AZOBR_RS10400 thiamine-phosphate synthase 0.22 AZOBR_RS07045 phosphomethylpyrimidine kinase — —
Rhodospirillum rubrum S1H 0.26 Rru_A1080 Thiamine-phosphate diphosphorylase (NCBI) 0.25 Rru_A1102 Phosphomethylpyrimidine kinase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.25 AMB_RS14385 thiamine phosphate synthase 0.22 AMB_RS16155 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS03290 thiamine phosphate synthase 0.23 HMPREF1058_RS06820 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.85 2
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS17750 thiamine phosphate synthase 0.23 ABI39_RS20615 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.94 1
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS14675 thiamine phosphate synthase 0.23 HMPREF1181_RS14705 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 56
Fusobacterium nucleatum SB010 0.23 HUW76_10295 thiamine phosphate synthase 0.22 HUW76_10300 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 35
Caulobacter crescentus NA1000 0.22 CCNA_03373 thiamin-phosphate pyrophosphorylase 0.21 CCNA_03331 phosphomethylpyrimidine kinase/hydroxymethylpyrimidine kinase — —
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_03373 thiamin-phosphate pyrophosphorylase 0.21 CCNA_03331 phosphomethylpyrimidine kinase/hydroxymethylpyrimidine kinase — —
Bacteroides ovatus ATCC 8483 0.22 BACOVA_02360 thiamine-phosphate diphosphorylase 0.24 BACOVA_02530 phosphomethylpyrimidine kinase 0.90 3
Mucilaginibacter yixingensis YX-36 DSM 26809 0.21 ABZR88_RS08830 thiamine phosphate synthase 0.22 ABZR88_RS08810 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.55 24
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_0797 thiamine-phosphate pyrophosphorylase (RefSeq) 0.20 DvMF_1376 phosphomethylpyrimidine kinase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU2091 thiE-1 thiamine-phosphate pyrophosphorylase (TIGR) 0.20 DVU0931 thiD phosphomethylpyrimidine kinase (TIGR) — —
Bacteroides thetaiotaomicron VPI-5482 0.21 BT0652 putative thiamine-phosphate pyrophosphorylase (NCBI ptt file) 0.26 BT0790 phosphomethylpyrimidine kinase (NCBI ptt file) 0.38 7
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.20 GFF4199 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.22 GFF3834 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) low > 78
Pectobacterium carotovorum WPP14 0.20 HER17_RS20385 thiamine phosphate synthase 0.24 HER17_RS06265 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.94 3
Enterobacter asburiae PDN3 0.20 EX28DRAFT_4535 thiamine-phosphate diphosphorylase 0.21 EX28DRAFT_0469 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 76
Escherichia coli ECOR38 0.20 HEPCGN_12015 thiE thiamine phosphate synthase 0.23 HEPCGN_02760 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 85
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_0216 thiamine-phosphate pyrophosphorylase 0.26 Echvi_0215 phosphomethylpyrimidine kinase low > 79
Escherichia coli ECRC101 0.19 OKFHMN_13380 thiE thiamine phosphate synthase 0.23 OKFHMN_24075 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli ECOR27 0.19 NOLOHH_05525 thiE thiamine phosphate synthase 0.23 NOLOHH_15415 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 57
Escherichia coli ECRC99 0.19 KEDOAH_14780 thiE thiamine phosphate synthase 0.23 KEDOAH_04075 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli ECRC98 0.19 JDDGAC_17005 thiE thiamine phosphate synthase 0.23 JDDGAC_28185 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Pantoea sp. MT58 0.19 IAI47_18090 thiamine phosphate synthase 0.19 IAI47_06810 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.74 7
Escherichia coli BW25113 0.19 b3993 thiE thiamine-phosphate pyrophosphorylase (NCBI) 0.23 b2103 thiD phosphomethylpyrimidine kinase (NCBI) 0.90 3
Escherichia coli ECRC101 0.19 MCAODC_03880 thiE thiamine phosphate synthase 0.23 MCAODC_21085 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli BL21 0.19 ECD_03870 thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) 0.23 ECD_02031 hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase low > 60
Escherichia coli ECRC102 0.19 NIAGMN_11130 thiE thiamine phosphate synthase 0.23 NIAGMN_22020 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli ECRC62 0.19 BNILDI_06000 thiE thiamine phosphate synthase 0.23 BNILDI_14330 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli Nissle 1917 0.19 ECOLIN_RS23035 thiamine phosphate synthase 0.22 ECOLIN_RS12335 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia fergusonii Becca 0.19 EFB2_04618 Thiamine-phosphate synthase 0.23 EFB2_01754 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_04057 Thiamine-phosphate synthase 0.23 OHPLBJKB_01607 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 73
Klebsiella michiganensis M5al 0.19 BWI76_RS01550 thiamine phosphate synthase 0.23 BWI76_RS19375 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.36 27
Dickeya dadantii 3937 0.19 DDA3937_RS01170 thiamine phosphate synthase 0.20 DDA3937_RS15335 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.88 4
Mycobacterium tuberculosis H37Rv 0.19 Rv0414c Thiamine-phosphate pyrophosphorylase ThiE (TMP pyrophosphorylase) (TMP-PPASE) (thiamine-phosphate synthase) 0.18 Rv0422c Probable phosphomethylpyrimidine kinase ThiD (HMP-phosphate kinase) (HMP-P kinase) — —
Rhizobium sp. OAE497 0.19 ABIE40_RS25925 thiamine phosphate synthase 0.25 ABIE40_RS25930 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 107
Agrobacterium fabrum C58 0.19 Atu3289 thiamine-phosphate pyrophosphorylase 0.23 Atu3290 phosphomethylpyrimidine kinase 0.85 2
Erwinia tracheiphila SCR3 0.19 LU632_RS00965 thiE thiamine phosphate synthase 0.21 LU632_RS08590 thiD bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 74
Dickeya dianthicola 67-19 0.19 HGI48_RS01165 thiamine phosphate synthase 0.20 HGI48_RS15410 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.75 29
Phaeobacter inhibens DSM 17395 0.18 PGA1_c09050 thiamine-phosphate pyrophosphorylase ThiE 0.16 PGA1_c09030 phosphomethylpyrimidine kinase ThiD 0.84 4
Enterobacter sp. TBS_079 0.18 MPMX20_00216 Thiamine-phosphate synthase 0.22 MPMX20_03076 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.66 1
Dickeya dianthicola ME23 0.18 DZA65_RS01210 thiamine phosphate synthase 0.20 DZA65_RS16235 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.90 3
Rahnella sp. WP5 0.18 EX31_RS16810 thiamine phosphate synthase 0.22 EX31_RS20390 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 89
Pontibacter actiniarum KMM 6156, DSM 19842 0.17 CA264_20425 thiamine phosphate synthase 0.22 CA264_20430 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.87 1
Burkholderia phytofirmans PsJN 0.17 BPHYT_RS17770 thiamine-phosphate pyrophosphorylase 0.20 BPHYT_RS04205 kinase — —
Dinoroseobacter shibae DFL-12 0.17 Dshi_0911 Thiamine-phosphate diphosphorylase (RefSeq) 0.18 Dshi_0915 phosphomethylpyrimidine kinase (RefSeq) low > 64
Serratia liquefaciens MT49 0.17 IAI46_01315 thiamine phosphate synthase 0.22 IAI46_19100 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 86
Bosea sp. OAE506 0.15 ABIE41_RS20180 thiamine phosphate synthase 0.25 ABIE41_RS21620 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Sinorhizobium meliloti 1021 0.14 SM_b20618 thiamine-phosphate pyrophosphorylase 0.18 SM_b20962 phoshomethylpyrimidine kinase low > 103
Rhodopseudomonas palustris CGA009 0.13 TX73_018535 thiamine phosphate synthase 0.21 TX73_020570 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —

Not shown: 4 genomes with orthologs for Psest_0536 only; 19 genomes with orthologs for Psest_0537 only