| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_26370 | | RNA helicase | 1.0 | PS417_02560 | | 23S rRNA methyltransferase | 0.38 | 14 |
| Pseudomonas fluorescens SBW25-INTG | 1.00 | PFLU_RS28020 | | ATP-dependent RNA helicase DbpA | 0.99 | PFLU_RS02630 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 109 |
| Pseudomonas fluorescens SBW25 | 1.00 | PFLU_RS28020 | | ATP-dependent RNA helicase DbpA | 0.99 | PFLU_RS02630 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.95 | AO356_13770 | | ATP-dependent RNA helicase | 0.97 | AO356_08605 | | 23S rRNA methyltransferase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.95 | Pf6N2E2_4673 | | ATP-dependent 23S rRNA helicase DbpA | 0.97 | Pf6N2E2_3606 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | low | > 103 |
| Pseudomonas sp. RS175 | 0.94 | PFR28_04172 | | ATP-dependent RNA helicase DbpA | 0.94 | PFR28_05131 | | '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.93 | Pf1N1B4_2412 | | ATP-dependent 23S rRNA helicase DbpA | 0.91 | Pf1N1B4_1402 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.93 | PfGW456L13_1078 | | ATP-dependent 23S rRNA helicase DbpA | 0.93 | PfGW456L13_143 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.91 | AO353_07850 | | ATP-dependent RNA helicase | 0.90 | AO353_13205 | | 23S rRNA methyltransferase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.88 | Psyr_0516 | | ATP-dependent RNA helicase DbpA | 0.90 | Psyr_0580 | | 23S rRNA Gm-2251 2'-O-methyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.88 | Psyr_0516 | | ATP-dependent RNA helicase DbpA | 0.90 | Psyr_0580 | | 23S rRNA Gm-2251 2'-O-methyltransferase | low | > 86 |
| Pseudomonas putida KT2440 | 0.85 | PP_4952 | | ATP-dependent RNA helicase, specific for 23S rRNA | 0.83 | PP_4879 | | 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_0344 | | Superfamily II DNA and RNA helicases | 0.88 | Psest_0692 | | rRNA methylase, putative, group 3 | low | > 67 |
| Pseudomonas sp. S08-1 | 0.74 | OH686_14770 | | ATP-dependent 23S rRNA helicase DbpA | 0.81 | OH686_15915 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase | low | > 80 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.60 | GFF5449 | | ATP-dependent 23S rRNA helicase DbpA | 0.43 | GFF4838 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | low | > 90 |
| Ralstonia solanacearum GMI1000 | 0.59 | RS_RS03120 | | ATP-dependent RNA helicase DbpA | 0.51 | RS_RS06160 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 80 |
| Marinobacter adhaerens HP15 | 0.59 | HP15_1329 | | DEAD/DEAH box helicase domain protein | 0.60 | HP15_623 | | RNA methyltransferase, TrmH family, group 3 | low | > 73 |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS20905 | | ATP-dependent RNA helicase DbpA | 0.51 | RPSI07_RS18025 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 81 |
| Paraburkholderia sabiae LMG 24235 | 0.59 | QEN71_RS00065 | | ATP-dependent RNA helicase DbpA | 0.48 | QEN71_RS22920 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | 0.67 | 104 |
| Serratia liquefaciens MT49 | 0.58 | IAI46_14765 | | ATP-dependent RNA helicase DbpA | 0.55 | IAI46_01665 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 86 |
| Paraburkholderia graminis OAS925 | 0.58 | ABIE53_000368 | | ATP-independent RNA helicase DbpA | 0.47 | ABIE53_001941 | | 23S rRNA (guanosine2251-2'-O)-methyltransferase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.58 | H281DRAFT_02294 | | ATP-dependent RNA helicase DbpA | 0.47 | H281DRAFT_00713 | | 23S rRNA Gm-2251 2'-O-methyltransferase | low | > 103 |
| Variovorax sp. OAS795 | 0.58 | ABID97_RS02340 | | ATP-dependent RNA helicase DbpA | 0.45 | ABID97_RS14320 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 91 |
| Ralstonia sp. UNC404CL21Col | 0.58 | ABZR87_RS19855 | | ATP-dependent RNA helicase DbpA | 0.51 | ABZR87_RS10990 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.58 | RR42_RS00295 | | DEAD/DEAH box helicase | 0.49 | RR42_RS13060 | | 23S rRNA methyltransferase | 0.21 | 99 |
| Burkholderia phytofirmans PsJN | 0.58 | BPHYT_RS00150 | | DEAD/DEAH box helicase | 0.48 | BPHYT_RS08460 | | 23S rRNA (guanosine-2'-O-)-methyltransferase | — | — |
| Pectobacterium carotovorum WPP14 | 0.57 | HER17_RS06775 | | ATP-dependent RNA helicase DbpA | 0.56 | HER17_RS03840 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 75 |
| Dechlorosoma suillum PS | 0.57 | Dsui_2946 | | DNA/RNA helicase, superfamily II | 0.45 | Dsui_1899 | | rRNA methylase, putative, group 3 | low | > 51 |
| Acidovorax sp. GW101-3H11 | 0.56 | Ac3H11_4671 | | ATP-dependent 23S rRNA helicase DbpA | 0.45 | Ac3H11_4141 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | low | > 79 |
| Variovorax sp. SCN45 | 0.55 | GFF7138 | | ATP-dependent 23S rRNA helicase DbpA | 0.44 | GFF1018 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185) | low | > 127 |
| Rahnella sp. WP5 | 0.55 | EX31_RS24740 | | ATP-dependent RNA helicase DbpA | 0.55 | EX31_RS08780 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 89 |
| Dyella japonica UNC79MFTsu3.2 | 0.54 | ABZR86_RS05195 | | ATP-dependent RNA helicase DbpA | 0.48 | ABZR86_RS08265 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | 0.29 | 28 |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS12705 | | ATP-dependent RNA helicase | 0.55 | BWI76_RS02580 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase | low | > 92 |
| Shewanella amazonensis SB2B | 0.53 | Sama_0752 | | ATP-dependent RNA helicase DbpA (RefSeq) | 0.58 | Sama_3066 | | 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.53 | Shewana3_3384 | | ATP-dependent RNA helicase DbpA (RefSeq) | 0.58 | Shewana3_0698 | | 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.53 | SO0897 | dbpA | ATP-dependent RNA helicase DbpA (NCBI ptt file) | 0.57 | SO3934 | | RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) | low | > 76 |
| Dickeya dadantii 3937 | 0.53 | DDA3937_RS11045 | | ATP-dependent RNA helicase DbpA | 0.57 | DDA3937_RS17255 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 74 |
| Dickeya dianthicola 67-19 | 0.53 | HGI48_RS11065 | | ATP-dependent RNA helicase DbpA | 0.56 | HGI48_RS17310 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Castellaniella sp019104865 MT123 | 0.53 | ABCV34_RS04635 | | ATP-dependent RNA helicase DbpA | 0.45 | ABCV34_RS06630 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 48 |
| Dickeya dianthicola ME23 | 0.53 | DZA65_RS11470 | | ATP-dependent RNA helicase DbpA | 0.56 | DZA65_RS18400 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 75 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_1006 | | Superfamily II DNA and RNA helicases | 0.56 | EX28DRAFT_3377 | | rRNA methylase, putative, group 3 | low | > 76 |
| Shewanella loihica PV-4 | 0.53 | Shew_0598 | | ATP-dependent RNA helicase DbpA (RefSeq) | 0.55 | Shew_3288 | | 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) | low | > 60 |
| Escherichia coli Nissle 1917 | 0.53 | ECOLIN_RS08060 | | ATP-dependent RNA helicase DbpA | 0.56 | ECOLIN_RS24270 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Escherichia coli ECRC62 | 0.52 | BNILDI_18025 | dbpA | ATP-dependent RNA helicase DbpA | 0.56 | BNILDI_07010 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Rhodanobacter sp. FW510-T8 | 0.52 | OKGIIK_16320 | dbpA | ATP-dependent RNA helicase DbpA | 0.46 | OKGIIK_06760 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 52 |
| Enterobacter sp. TBS_079 | 0.52 | MPMX20_02441 | | ATP-dependent RNA helicase DbpA | 0.56 | MPMX20_00461 | | 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | low | > 85 |
| Escherichia coli ECOR38 | 0.52 | HEPCGN_26000 | dbpA | ATP-dependent RNA helicase DbpA | 0.56 | HEPCGN_10445 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 85 |
| Escherichia coli ECOR27 | 0.52 | NOLOHH_19875 | dbpA | ATP-dependent RNA helicase DbpA | 0.56 | NOLOHH_04480 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Escherichia fergusonii Becca | 0.52 | EFB2_02584 | | ATP-dependent RNA helicase DbpA | 0.56 | EFB2_04355 | | 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.52 | GFF2649 | | ATP-dependent 23S rRNA helicase DbpA | 0.55 | GFF833 | | '23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)' transl_table=11 | low | > 78 |
| Escherichia coli BW25113 | 0.52 | b1343 | dbpA | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | 0.56 | b4180 | rlmB | 23S rRNA (Gm2251)-methyltransferase (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.52 | ECD_01320 | | ATP-dependent RNA helicase, specific for 23S rRNA | 0.56 | ECD_04047 | | 23S rRNA mG2251 2'-O-ribose methyltransferase, SAM-dependent | low | > 60 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.52 | OHPLBJKB_02338 | | ATP-dependent RNA helicase DbpA | 0.56 | OHPLBJKB_03862 | | '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 | low | > 73 |
| Escherichia coli ECRC101 | 0.52 | OKFHMN_02160 | dbpA | ATP-dependent RNA helicase DbpA | 0.56 | OKFHMN_12215 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Escherichia coli ECRC99 | 0.52 | KEDOAH_26595 | dbpA | ATP-dependent RNA helicase DbpA | 0.56 | KEDOAH_15940 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Escherichia coli ECRC98 | 0.52 | JDDGAC_04720 | dbpA | ATP-dependent RNA helicase DbpA | 0.56 | JDDGAC_15855 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Escherichia coli ECRC102 | 0.52 | NIAGMN_26330 | dbpA | ATP-dependent RNA helicase DbpA | 0.56 | NIAGMN_10065 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Escherichia coli ECRC101 | 0.52 | MCAODC_16095 | dbpA | ATP-dependent RNA helicase DbpA | 0.56 | MCAODC_02730 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Rhodanobacter denitrificans MT42 | 0.52 | LRK55_RS09695 | | ATP-dependent RNA helicase DbpA | 0.47 | LRK55_RS00230 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.52 | LRK54_RS10055 | | ATP-dependent RNA helicase DbpA | 0.47 | LRK54_RS00490 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 59 |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_12980 | | ATP-dependent RNA helicase DbpA | 0.56 | CSW01_13150 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 62 |
| Pantoea sp. MT58 | 0.50 | IAI47_15055 | | ATP-dependent RNA helicase DbpA | 0.57 | IAI47_02630 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 76 |
| Kangiella aquimarina DSM 16071 | 0.50 | B158DRAFT_2047 | | ATP-dependent RNA helicase DbpA (EC 5.99.1.-) | 0.56 | B158DRAFT_1990 | | 23S rRNA Gm-2251 2'-O-methyltransferase (EC 2.1.1.185) | low | > 40 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.50 | Xcc-8004.2274.1 | | ATP-dependent 23S rRNA helicase DbpA | 0.44 | Xcc-8004.3368.1 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.50 | LU632_RS11995 | dbpA | ATP-dependent RNA helicase DbpA | 0.55 | LU632_RS21745 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 74 |
| Lysobacter sp. OAE881 | 0.50 | ABIE51_RS14930 | | ATP-dependent RNA helicase DbpA | 0.43 | ABIE51_RS07480 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.43 | MIT1002_03748 | | ATP-independent RNA helicase DbpA | 0.58 | MIT1002_03605 | | 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.38 | CA264_06050 | | ATP-dependent RNA helicase | 0.23 | CA264_20095 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | 0.49 | 44 |
Not shown: 0 genomes with orthologs for PS417_26370 only; 18 genomes with orthologs for PS417_02560 only