| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_1818 | | GDP-mannose 4,6-dehydratase | 1.0 | Psest_3720 | | penicillin-binding protein, 1A family | 0.44 | 13 |
| Phaeobacter inhibens DSM 17395 | 0.88 | PGA1_c02320 | | GDP-mannose 4,6-dehydratase Gmd | 0.26 | PGA1_c20280 | | penicillin-binding protein 1A MrcA | low | > 62 |
| Pseudomonas fluorescens SBW25-INTG | 0.84 | PFLU_RS17890 | | GDP-mannose 4,6-dehydratase | 0.70 | PFLU_RS02000 | | penicillin-binding protein 1A | low | > 109 |
| Enterobacter asburiae PDN3 | 0.84 | EX28DRAFT_0502 | | GDP-mannose 4,6-dehydratase | 0.38 | EX28DRAFT_4146 | | penicillin-binding protein, 1A family | low | > 76 |
| Pseudomonas fluorescens SBW25 | 0.84 | PFLU_RS17890 | | GDP-mannose 4,6-dehydratase | 0.70 | PFLU_RS02000 | | penicillin-binding protein 1A | low | > 109 |
| Escherichia coli BW25113 | 0.84 | b2053 | gmd | GDP-D-mannose dehydratase, NAD(P)-binding (NCBI) | 0.37 | b3396 | mrcA | peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) | low | > 76 |
| Escherichia coli ECRC62 | 0.84 | BNILDI_14585 | | GDP-mannose 4,6-dehydratase | 0.38 | BNILDI_02650 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | — | — |
| Escherichia coli ECRC101 | 0.84 | OKFHMN_24345 | | GDP-mannose 4,6-dehydratase | 0.37 | OKFHMN_17080 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | — | — |
| Escherichia coli ECRC99 | 0.84 | KEDOAH_03805 | | GDP-mannose 4,6-dehydratase | 0.37 | KEDOAH_11060 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | — | — |
| Escherichia fergusonii Becca | 0.84 | EFB2_01801 | | GDP-mannose 4,6-dehydratase | 0.38 | EFB2_00432 | | Penicillin-binding protein 1A | 0.52 | 51 |
| Escherichia coli ECOR27 | 0.84 | NOLOHH_15675 | | GDP-mannose 4,6-dehydratase | 0.38 | NOLOHH_08870 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 57 |
| Escherichia coli ECRC98 | 0.84 | JDDGAC_28455 | | GDP-mannose 4,6-dehydratase | 0.37 | JDDGAC_20710 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | — | — |
| Escherichia coli ECRC101 | 0.84 | MCAODC_20595 | | GDP-mannose 4,6-dehydratase | 0.37 | MCAODC_07610 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | — | — |
| Escherichia coli BL21 | 0.84 | ECD_01959 | | GDP-D-mannose dehydratase, NAD(P)-binding | 0.38 | ECD_03248 | | penicillin-binding protein 1a, murein transglycosylase and transpeptidase | low | > 60 |
| Escherichia coli ECRC102 | 0.84 | NIAGMN_22290 | | GDP-mannose 4,6-dehydratase | 0.37 | NIAGMN_14850 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | — | — |
| Escherichia coli ECOR38 | 0.84 | HEPCGN_03045 | | GDP-mannose 4,6-dehydratase | 0.38 | HEPCGN_15900 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 85 |
| Enterobacter sp. TBS_079 | 0.84 | MPMX20_03035 | | GDP-mannose 4,6-dehydratase | 0.38 | MPMX20_04284 | | Penicillin-binding protein 1A | low | > 85 |
| Escherichia coli Nissle 1917 | 0.84 | ECOLIN_RS12095 | | GDP-mannose 4,6-dehydratase | 0.38 | ECOLIN_RS19395 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 52 |
| Dickeya dianthicola 67-19 | 0.84 | HGI48_RS18595 | | GDP-mannose 4,6-dehydratase | 0.37 | HGI48_RS19710 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 71 |
| Dickeya dianthicola ME23 | 0.84 | DZA65_RS19730 | | GDP-mannose 4,6-dehydratase | 0.37 | DZA65_RS20795 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.83 | GFF3875 | | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) | 0.39 | GFF623 | | Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) | low | > 78 |
| Dickeya dadantii 3937 | 0.83 | DDA3937_RS18665 | | GDP-mannose 4,6-dehydratase | 0.37 | DDA3937_RS19580 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.83 | CSW01_01280 | | GDP-mannose 4,6-dehydratase | 0.38 | CSW01_13335 | | penicillin-binding protein 1A | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.81 | GFF2554 | | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) | 0.34 | GFF1338 | | Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) | low | > 90 |
| Pectobacterium carotovorum WPP14 | 0.80 | HER17_RS14540 | | GDP-mannose 4,6-dehydratase | 0.38 | HER17_RS01745 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | 0.73 | 6 |
| Cupriavidus basilensis FW507-4G11 | 0.80 | RR42_RS33235 | | GDP-mannose 4,6-dehydratase | 0.37 | RR42_RS19040 | | penicillin-binding protein | — | — |
| Variovorax sp. SCN45 | 0.78 | GFF61 | | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) | 0.34 | GFF3310 | | Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) | low | > 127 |
| Paraburkholderia sabiae LMG 24235 | 0.73 | QEN71_RS26360 | | GDP-mannose 4,6-dehydratase | 0.36 | QEN71_RS28065 | | penicillin-binding protein 1A | low | > 153 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.72 | DVU0448 | gmd | GDP-mannose 4,6-dehydratase (TIGR) | 0.28 | DVU0633 | | penicillin-binding protein (TIGR) | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.72 | H281DRAFT_04776 | | GDPmannose 4,6-dehydratase | 0.36 | H281DRAFT_05609 | | penicillin-binding protein 1A | low | > 103 |
| Desulfovibrio vulgaris Miyazaki F | 0.72 | DvMF_2694 | | GDP-mannose 4,6-dehydratase (RefSeq) | 0.27 | DvMF_2630 | | penicillin-binding protein, 1A family (RefSeq) | — | — |
| Burkholderia phytofirmans PsJN | 0.72 | BPHYT_RS04000 | | GDP-mannose 4,6-dehydratase | 0.36 | BPHYT_RS17915 | | penicillin-binding protein 1A | — | — |
| Paraburkholderia graminis OAS925 | 0.71 | ABIE53_000940 | | GDPmannose 4,6-dehydratase | 0.36 | ABIE53_003746 | | penicillin-binding protein 1A | low | > 113 |
| Castellaniella sp019104865 MT123 | 0.71 | ABCV34_RS12935 | | GDP-mannose 4,6-dehydratase | 0.32 | ABCV34_RS12695 | | PBP1A family penicillin-binding protein | — | — |
| Dechlorosoma suillum PS | 0.71 | Dsui_0085 | | GDP-mannose 4,6-dehydratase | 0.38 | Dsui_1186 | | penicillin-binding protein, 1A family | — | — |
| Rhodanobacter denitrificans MT42 | 0.70 | LRK55_RS03650 | | GDP-mannose 4,6-dehydratase | 0.42 | LRK55_RS11555 | | penicillin-binding protein 1A | low | > 63 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.69 | CA265_RS19210 | | GDP-mannose 4,6-dehydratase | 0.17 | CA265_RS09720 | | transglycosylase | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.67 | ABZR88_RS18375 | | GDP-mannose 4,6-dehydratase | 0.17 | ABZR88_RS02795 | | penicillin-binding protein 1A | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.67 | Echvi_4398 | | GDP-mannose 4,6-dehydratase | 0.17 | Echvi_0618 | | Membrane carboxypeptidase/penicillin-binding protein | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.66 | CA264_05200 | | GDP-mannose 4,6-dehydratase | 0.17 | CA264_20540 | | transglycosylase | low | > 74 |
| Caulobacter crescentus NA1000 Δfur | 0.65 | CCNA_00472 | | GDP-mannose 4,6 dehydratase | 0.27 | CCNA_01951 | | multimodular transpeptidase-transglycosylase PbpY | low | > 67 |
| Caulobacter crescentus NA1000 | 0.65 | CCNA_00472 | | GDP-mannose 4,6 dehydratase | 0.27 | CCNA_01951 | | multimodular transpeptidase-transglycosylase PbpY | low | > 66 |
| Parabacteroides merdae CL09T00C40 | 0.64 | HMPREF1078_RS00185 | | GDP-mannose 4,6-dehydratase | 0.14 | HMPREF1078_RS00730 | | transglycosylase domain-containing protein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.63 | Dshi_4139 | | GDP-mannose 4,6-dehydratase (RefSeq) | 0.27 | Dshi_1171 | | penicillin-binding protein, 1A family (RefSeq) | — | — |
| Azospirillum sp. SherDot2 | 0.63 | MPMX19_06644 | | GDP-mannose 4,6-dehydratase | 0.31 | MPMX19_00340 | | Penicillin-binding protein 1A | — | — |
| Rhodospirillum rubrum S1H | 0.63 | Rru_A0253 | | GDP-mannose 4,6-dehydratase (NCBI) | 0.32 | Rru_A2147 | | Penicillin-binding protein 1A (NCBI) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.62 | AMB_RS05505 | | GDP-mannose 4,6-dehydratase | 0.33 | AMB_RS16340 | | penicillin-binding protein 1A | low | > 64 |
| Bacteroides ovatus ATCC 8483 | 0.61 | BACOVA_00511 | | GDP-mannose 4,6-dehydratase | 0.14 | BACOVA_02478 | | transglycosylase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.61 | BT1224 | | GDP-mannose 4,6-dehydratase (NCBI ptt file) | 0.15 | BT0743 | | penicillin-binding protein 1A (PBP-1a) (NCBI ptt file) | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.61 | HMPREF1058_RS17280 | | GDP-mannose 4,6-dehydratase | 0.13 | HMPREF1058_RS03825 | | transglycosylase domain-containing protein | — | — |
| Phocaeicola dorei CL03T12C01 | 0.60 | ABI39_RS20410 | | GDP-mannose 4,6-dehydratase | 0.14 | ABI39_RS17395 | | transglycosylase domain-containing protein | — | — |
| Agrobacterium fabrum C58 | 0.58 | Atu4789 | | GDP-mannose 4,6-dehydratase | 0.28 | Atu1341 | | penicillin-binding protein 1a | — | — |
| Rahnella sp. WP5 | 0.52 | EX31_RS02865 | | GDP-mannose 4,6-dehydratase | 0.39 | EX31_RS04750 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 89 |
| Ralstonia solanacearum PSI07 | 0.47 | RPSI07_RS19840 | | GDP-mannose 4,6-dehydratase | 0.34 | RPSI07_RS10265 | | penicillin-binding protein 1A | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_0916 | | GDP-mannose 4,6-dehydratase | 0.72 | Psyr_0402 | | Peptidoglycan glycosyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_0916 | | GDP-mannose 4,6-dehydratase | 0.72 | Psyr_0402 | | Peptidoglycan glycosyltransferase | low | > 86 |
| Pseudomonas putida KT2440 | 0.47 | PP_1799 | | GDP-mannose 4,6-dehydratase | 0.72 | PP_5084 | | penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase | low | > 96 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.46 | Xcc-8004.4503.1 | | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) | 0.36 | Xcc-8004.1196.1 | | Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_01210 | gmd | GDP-mannose 4,6-dehydratase | 0.42 | OKGIIK_12065 | | Penicillin-binding protein 1A | low | > 52 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS05705 | | GDP-mannose 4,6-dehydratase | 0.33 | ABID97_RS02790 | | penicillin-binding protein 1A | low | > 91 |
| Bosea sp. OAE506 | 0.45 | ABIE41_RS02910 | | GDP-mannose 4,6-dehydratase | 0.27 | ABIE41_RS16150 | | penicillin-binding protein 1A | low | > 77 |
| Rhodopseudomonas palustris CGA009 | 0.44 | TX73_020470 | | GDP-mannose 4,6-dehydratase | 0.29 | TX73_012680 | | penicillin-binding protein 1A | — | — |
| Azospirillum brasilense Sp245 | 0.44 | AZOBR_RS33465 | | GDP-mannose 4 6-dehydratase | 0.32 | AZOBR_RS11840 | | penicillin-binding protein 1A | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.43 | A4249_RS12980 | | GDP-mannose 4,6-dehydratase | 0.28 | A4249_RS04500 | | penicillin-binding protein 1A | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_10245 | | GDP-mannose 4,6-dehydratase | 0.72 | AO353_12470 | | peptidase | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.40 | Pf6N2E2_4242 | | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) | 0.68 | Pf6N2E2_3761 | | Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) | 0.17 | 39 |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_11835 | | GDP-mannose 4,6-dehydratase | 0.72 | AO356_09420 | | peptidase | low | > 104 |
| Pseudomonas sp. RS175 | 0.40 | PFR28_04554 | | GDP-mannose 4,6-dehydratase | 0.72 | PFR28_05006 | | Penicillin-binding protein 1A | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.40 | PfGW456L13_2338 | | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) | 0.68 | PfGW456L13_282 | | Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) | low | > 87 |
| Pseudomonas sp. S08-1 | 0.40 | OH686_11980 | | GDP-mannose 4,6-dehydratase | 0.75 | OH686_10055 | | Multimodular transpeptidase-transglycosylase | low | > 80 |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_1965 | | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) | 0.72 | Pf1N1B4_1544 | | Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) | low | > 87 |
| Rhodanobacter denitrificans FW104-10B01 | 0.13 | LRK54_RS05640 | | GDP-mannose 4,6-dehydratase | 0.42 | LRK54_RS11830 | | penicillin-binding protein 1A | low | > 59 |
Not shown: 3 genomes with orthologs for Psest_1818 only; 25 genomes with orthologs for Psest_3720 only