| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_27705 | | amino acid dehydrogenase | 1.0 | PS417_01635 | | nitrogen regulation protein NR(I) | 0.29 | 3 |
| Pseudomonas fluorescens SBW25 | 0.98 | PFLU_RS29380 | | D-amino acid dehydrogenase | 1.00 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.98 | PFLU_RS29380 | | D-amino acid dehydrogenase | 1.00 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.95 | Pf6N2E2_4391 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.96 | Pf6N2E2_3826 | | Nitrogen regulation protein NR(I) | 0.22 | 36 |
| Pseudomonas fluorescens FW300-N2E3 | 0.95 | AO353_09155 | | amino acid dehydrogenase | 0.95 | AO353_12145 | | nitrogen regulation protein NR(I) | 0.44 | 13 |
| Pseudomonas fluorescens GW456-L13 | 0.95 | PfGW456L13_812 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.95 | PfGW456L13_347 | | Nitrogen regulation protein NR(I) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.95 | Pf1N1B4_2144 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.98 | Pf1N1B4_1611 | | Nitrogen regulation protein NR(I) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.95 | AO356_12620 | | amino acid dehydrogenase | 0.96 | AO356_09730 | | nitrogen regulation protein NR(I) | 0.27 | 44 |
| Pseudomonas sp. RS175 | 0.94 | PFR28_04399 | | D-amino acid dehydrogenase 1 | 0.95 | PFR28_04944 | | DNA-binding transcriptional regulator NtrC | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.92 | Psyr_0235 | | D-amino acid dehydrogenase small subunit | 0.95 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.92 | Psyr_0235 | | D-amino acid dehydrogenase small subunit | 0.95 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | low | > 86 |
| Pseudomonas putida KT2440 | 0.90 | PP_5270 | | D-amino-acid:quinone oxidoreductase (deaminating) | 0.93 | PP_5048 | | two-component system DNA-binding transcriptional dual regulator GlnL/GlnG | 0.20 | 51 |
| Pseudomonas sp. S08-1 | 0.89 | OH686_13685 | | D-amino acid dehydrogenase | 0.93 | OH686_10640 | | nitrogen regulation protein NR(I) | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.86 | Psest_3793 | | D-alanine dehydrogenase (EC 1.4.99.-) (from data) | 0.85 | Psest_3932 | | nitrogen regulation protein NR(I) | 0.35 | 5 |
| Rhodanobacter denitrificans FW104-10B01 | 0.76 | LRK54_RS00590 | | D-amino acid dehydrogenase | 0.45 | LRK54_RS07980 | | nitrogen regulation protein NR(I) | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.76 | OKGIIK_06665 | dadA | D-amino acid dehydrogenase small subunit | 0.43 | OKGIIK_14465 | ntrC | nitrogen regulation protein NR(I) | — | — |
| Rhodanobacter denitrificans MT42 | 0.76 | LRK55_RS00360 | | D-amino acid dehydrogenase | 0.45 | LRK55_RS07730 | | nitrogen regulation protein NR(I) | low | > 63 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.67 | Xcc-8004.4621.1 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.47 | Xcc-8004.252.1 | | Nitrogen regulation protein NtrC | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.66 | HSERO_RS08375 | | D-amino acid dehydrogenase small subunit | 0.58 | HSERO_RS15680 | | chemotaxis protein CheY | low | > 78 |
| Variovorax sp. OAS795 | 0.65 | ABID97_RS22385 | | D-amino acid dehydrogenase | 0.55 | ABID97_RS09945 | | nitrogen regulation protein NR(I) | low | > 91 |
| Paraburkholderia graminis OAS925 | 0.65 | ABIE53_003133 | | D-amino-acid dehydrogenase | 0.55 | ABIE53_002804 | | two-component system nitrogen regulation response regulator GlnG | low | > 113 |
| Ralstonia solanacearum IBSBF1503 | 0.65 | RALBFv3_RS13870 | | D-amino acid dehydrogenase small subunit | 0.58 | RALBFv3_RS15540 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia solanacearum UW163 | 0.65 | UW163_RS15940 | | D-amino acid dehydrogenase small subunit | 0.58 | UW163_RS13000 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia sp. UNC404CL21Col | 0.64 | ABZR87_RS09560 | | D-amino acid dehydrogenase | 0.58 | ABZR87_RS11070 | | nitrogen regulation protein NR(I) | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.64 | H281DRAFT_04287 | | D-amino-acid dehydrogenase | 0.55 | H281DRAFT_00454 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family | low | > 103 |
| Ralstonia solanacearum GMI1000 | 0.64 | RS_RS04605 | | D-amino acid dehydrogenase small subunit | 0.58 | RS_RS06320 | | nitrogen regulation protein NR(I) | — | — |
| Burkholderia phytofirmans PsJN | 0.64 | BPHYT_RS14790 | | D-amino acid dehydrogenase | 0.55 | BPHYT_RS12935 | | chemotaxis protein CheY | 0.25 | 6 |
| Ralstonia solanacearum PSI07 | 0.64 | RPSI07_RS19600 | | D-amino acid dehydrogenase small subunit | 0.58 | RPSI07_RS17815 | | nitrogen regulation protein NR(I) | low | > 81 |
| Pantoea sp. MT58 | 0.64 | IAI47_08890 | | D-amino acid dehydrogenase | 0.67 | IAI47_00450 | | nitrogen regulation protein NR(I) | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.63 | QEN71_RS04190 | | D-amino acid dehydrogenase | 0.56 | QEN71_RS05675 | | nitrogen regulation protein NR(I) | low | > 153 |
| Variovorax sp. SCN45 | 0.63 | GFF1773 | | D-amino acid dehydrogenase (EC 1.4.99.6) | 0.56 | GFF3066 | | Nitrogen regulation protein NR(I), GlnG (=NtrC) | — | — |
| Serratia liquefaciens MT49 | 0.63 | IAI46_14460 | | D-amino acid dehydrogenase | 0.68 | IAI46_24960 | | nitrogen regulation protein NR(I) | low | > 86 |
| Acinetobacter radioresistens SK82 | 0.63 | MPMX26_01248 | | D-amino acid dehydrogenase | 0.67 | MPMX26_01292 | | DNA-binding transcriptional regulator NtrC | low | > 36 |
| Dickeya dianthicola ME23 | 0.62 | DZA65_RS11540 | | D-amino acid dehydrogenase | 0.66 | DZA65_RS22210 | | nitrogen regulation protein NR(I) | low | > 75 |
| Cupriavidus basilensis FW507-4G11 | 0.62 | RR42_RS04585 | | amino acid dehydrogenase | 0.58 | RR42_RS12980 | | chemotaxis protein CheY | 0.21 | 75 |
| Rahnella sp. WP5 | 0.62 | EX31_RS10485 | | D-amino acid dehydrogenase | 0.67 | EX31_RS15880 | | nitrogen regulation protein NR(I) | low | > 89 |
| Dickeya dadantii 3937 | 0.62 | DDA3937_RS11170 | | D-amino acid dehydrogenase | 0.67 | DDA3937_RS00125 | | nitrogen regulation protein NR(I) | low | > 74 |
| Dickeya dianthicola 67-19 | 0.62 | HGI48_RS11195 | | D-amino acid dehydrogenase | 0.66 | HGI48_RS21235 | | nitrogen regulation protein NR(I) | low | > 71 |
| Enterobacter asburiae PDN3 | 0.62 | EX28DRAFT_0766 | | Glycine/D-amino acid oxidases (deaminating) | 0.67 | EX28DRAFT_4350 | | nitrogen regulation protein NR(I) | low | > 76 |
| Escherichia coli ECRC98 | 0.61 | JDDGAC_06220 | dadA | D-amino acid dehydrogenase | 0.67 | JDDGAC_17735 | glnG | nitrogen regulation protein NR(I) | — | — |
| Escherichia coli ECRC101 | 0.61 | OKFHMN_28290 | dadA | D-amino acid dehydrogenase | 0.67 | OKFHMN_14110 | glnG | nitrogen regulation protein NR(I) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.61 | OHPLBJKB_02500 | | D-amino acid dehydrogenase | 0.67 | OHPLBJKB_04184 | | DNA-binding transcriptional regulator NtrC | low | > 73 |
| Escherichia coli Nissle 1917 | 0.61 | ECOLIN_RS07185 | | D-amino acid dehydrogenase | 0.67 | ECOLIN_RS22295 | | nitrogen regulation protein NR(I) | — | — |
| Escherichia fergusonii Becca | 0.61 | EFB2_02743 | | D-amino acid dehydrogenase | 0.67 | EFB2_04748 | | DNA-binding transcriptional regulator NtrC | low | > 86 |
| Escherichia coli BW25113 | 0.61 | b1189 | dadA | D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) | 0.67 | b3868 | glnG | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.61 | NOLOHH_20725 | dadA | D-amino acid dehydrogenase | 0.67 | NOLOHH_06240 | glnG | nitrogen regulation protein NR(I) | low | > 57 |
| Escherichia coli ECOR38 | 0.61 | HEPCGN_24750 | dadA | D-amino acid dehydrogenase | 0.67 | HEPCGN_12740 | glnG | nitrogen regulation protein NR(I) | low | > 85 |
| Escherichia coli ECRC99 | 0.61 | KEDOAH_25305 | dadA | D-amino acid dehydrogenase | 0.67 | KEDOAH_14040 | glnG | nitrogen regulation protein NR(I) | — | — |
| Escherichia coli ECRC102 | 0.61 | NIAGMN_27930 | dadA | D-amino acid dehydrogenase | 0.67 | NIAGMN_11865 | glnG | nitrogen regulation protein NR(I) | — | — |
| Escherichia coli ECRC62 | 0.61 | BNILDI_18890 | dadA | D-amino acid dehydrogenase | 0.67 | BNILDI_05290 | glnG | nitrogen regulation protein NR(I) | — | — |
| Escherichia coli BL21 | 0.61 | ECD_01164 | | D-amino acid dehydrogenase | 0.67 | ECD_03753 | | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein | low | > 60 |
| Escherichia coli ECRC101 | 0.61 | MCAODC_21880 | dadA | D-amino acid dehydrogenase | 0.67 | MCAODC_04610 | glnG | nitrogen regulation protein NR(I) | — | — |
| Enterobacter sp. TBS_079 | 0.61 | MPMX20_02699 | | D-amino acid dehydrogenase | 0.67 | MPMX20_04597 | | DNA-binding transcriptional regulator NtrC | low | > 85 |
| Pectobacterium carotovorum WPP14 | 0.61 | HER17_RS11170 | | D-amino acid dehydrogenase | 0.66 | HER17_RS21440 | | nitrogen regulation protein NR(I) | low | > 75 |
| Klebsiella michiganensis M5al | 0.61 | BWI76_RS17735 | | D-amino acid dehydrogenase small subunit | 0.66 | BWI76_RS00385 | | nitrogen assimilation regulatory protein | 0.17 | 88 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.61 | GFF2804 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.67 | GFF2220 | | Nitrogen regulation protein NR(I) | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.60 | LU632_RS13070 | | D-amino acid dehydrogenase | 0.66 | LU632_RS22135 | glnG | nitrogen regulation protein NR(I) | low | > 74 |
| Azospirillum sp. SherDot2 | 0.59 | MPMX19_06097 | | D-amino acid dehydrogenase 1 | 0.40 | MPMX19_01112 | | DNA-binding transcriptional regulator NtrC | — | — |
| Agrobacterium fabrum C58 | 0.58 | Atu3293 | | D-amino acid dehydrogenase small subunit | 0.40 | Atu1446 | | two component response regulator | 0.15 | 65 |
| Azospirillum brasilense Sp245 | 0.58 | AZOBR_RS08020 | | D-alanine dehydrogenase (EC 1.4.99.-) (from data) | 0.40 | AZOBR_RS14430 | | chemotaxis protein CheY | low | > 97 |
| Castellaniella sp019104865 MT123 | 0.56 | ABCV34_RS10810 | | D-amino acid dehydrogenase | 0.49 | ABCV34_RS03540 | | nitrogen regulation protein NR(I) | low | > 48 |
| Vibrio cholerae E7946 ATCC 55056 | 0.55 | CSW01_04065 | | D-amino acid dehydrogenase small subunit | 0.65 | CSW01_13865 | | nitrogen regulation protein NR(I) | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.54 | Dshi_0558 | | D-amino-acid dehydrogenase (RefSeq) | 0.31 | Dshi_1572 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.40 | AMB_RS14080 | | D-amino-acid dehydrogenase | 0.40 | AMB_RS11950 | | nitrogen regulation protein NR(I) | — | — |
| Dechlorosoma suillum PS | 0.40 | Dsui_0501 | | glycine/D-amino acid oxidase, deaminating | 0.59 | Dsui_1051 | | nitrogen regulation protein NR(I) | — | — |
| Marinobacter adhaerens HP15 | 0.38 | HP15_2610 | | D-amino acid dehydrogenase small subunit | 0.74 | HP15_425 | | two-component response regulator NtrC | low | > 73 |
| Rhodospirillum rubrum S1H | 0.38 | Rru_A1546 | | FAD dependent oxidoreductase (NCBI) | 0.40 | Rru_A1678 | | Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.36 | GFF1973 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.55 | GFF5269 | | Nitrogen regulation protein NR(I) | low | > 90 |
| Sphingomonas koreensis DSMZ 15582 | 0.23 | Ga0059261_3351 | | Glycine/D-amino acid oxidases (deaminating) | 0.37 | Ga0059261_0137 | | nitrogen regulation protein NR(I) | low | > 68 |
| Dyella japonica UNC79MFTsu3.2 | 0.17 | ABZR86_RS08930 | | FAD-dependent oxidoreductase | 0.42 | ABZR86_RS15515 | | nitrogen regulation protein NR(I) | — | — |
Not shown: 4 genomes with orthologs for PS417_27705 only; 18 genomes with orthologs for PS417_01635 only