| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF2198 | | NADP-dependent malic enzyme (EC 1.1.1.40) | 1.0 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.60 | 11 |
| Escherichia coli ECOR38 | 0.95 | HEPCGN_21175 | maeB | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.89 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | low | > 85 |
| Escherichia coli ECRC101 | 0.95 | MCAODC_12535 | maeB | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.89 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC102 | 0.95 | NIAGMN_19775 | maeB | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.89 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia fergusonii Becca | 0.95 | EFB2_01425 | | NADP-dependent malic enzyme | 0.89 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | low | > 86 |
| Escherichia coli ECRC98 | 0.95 | JDDGAC_25950 | maeB | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.89 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC101 | 0.95 | OKFHMN_22005 | maeB | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.89 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECOR27 | 0.95 | NOLOHH_13685 | maeB | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.89 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | low | > 57 |
| Escherichia coli ECRC62 | 0.95 | BNILDI_12495 | maeB | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.89 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli Nissle 1917 | 0.95 | ECOLIN_RS14055 | | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.89 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | low | > 52 |
| Enterobacter asburiae PDN3 | 0.95 | EX28DRAFT_0198 | | Malic enzyme | 0.83 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | low | > 76 |
| Escherichia coli BW25113 | 0.95 | b2463 | maeB | malic enzyme (NCBI) | 0.89 | b2951 | yggS | predicted enzyme (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.95 | OHPLBJKB_01268 | | NADP-dependent malic enzyme | 0.89 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | low | > 73 |
| Escherichia coli ECRC99 | 0.95 | KEDOAH_06215 | maeB | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.89 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli BL21 | 0.95 | ECD_02354 | | malic enzyme: putative oxidoreductase/phosphotransacetylase | 0.89 | ECD_02781 | | UPF0001 family protein, PLP-binding | low | > 60 |
| Enterobacter sp. TBS_079 | 0.94 | MPMX20_03324 | | NADP-dependent malic enzyme | 0.80 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | low | > 85 |
| Klebsiella michiganensis M5al | 0.94 | BWI76_RS20830 | | bifunctional malic enzyme oxidoreductase/phosphotransacetylase | 0.83 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | low | > 92 |
| Serratia liquefaciens MT49 | 0.87 | IAI46_18585 | | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.65 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.87 | HER17_RS17280 | | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.67 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Rahnella sp. WP5 | 0.87 | EX31_RS20275 | | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.65 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 89 |
| Dickeya dadantii 3937 | 0.86 | DDA3937_RS04355 | | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.71 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Dickeya dianthicola ME23 | 0.85 | DZA65_RS04265 | | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.71 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Dickeya dianthicola 67-19 | 0.84 | HGI48_RS04345 | | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | 0.70 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Dechlorosoma suillum PS | 0.63 | Dsui_0543 | | malic enzyme | 0.54 | Dsui_0603 | | pyridoxal phosphate enzyme, YggS family | low | > 51 |
| Paraburkholderia graminis OAS925 | 0.63 | ABIE53_000015 | | malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) | 0.53 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.63 | H281DRAFT_05846 | | malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) | 0.54 | H281DRAFT_04680 | | hypothetical protein | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS18310 | | malic enzyme | 0.54 | BPHYT_RS03495 | | hypothetical protein | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.63 | QEN71_RS28455 | | NADP-dependent malic enzyme | 0.55 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 153 |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS16825 | | NADP-dependent malic enzyme oxidoreductase | 0.52 | HSERO_RS18995 | | hypothetical protein | low | > 78 |
| Ralstonia solanacearum UW163 | 0.62 | UW163_RS10465 | | NADP-dependent malic enzyme | 0.45 | UW163_RS08050 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.62 | RALBFv3_RS03260 | | NADP-dependent malic enzyme | 0.45 | RALBFv3_RS05575 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.62 | RS_RS10650 | | NADP-dependent malic enzyme | 0.47 | RS_RS13435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.62 | RPSI07_RS14050 | | NADP-dependent malic enzyme | 0.44 | RPSI07_RS11725 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 81 |
| Cupriavidus basilensis FW507-4G11 | 0.61 | RR42_RS05210 | | malic enzyme | 0.50 | RR42_RS17355 | | hypothetical protein | low | > 128 |
| Acinetobacter radioresistens SK82 | 0.61 | MPMX26_01000 | | NADP-dependent malic enzyme | 0.45 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | low | > 36 |
| Variovorax sp. OAS795 | 0.61 | ABID97_RS22340 | | NADP-dependent malic enzyme | 0.49 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Ralstonia sp. UNC404CL21Col | 0.61 | ABZR87_RS01565 | | NADP-dependent malic enzyme | 0.48 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 80 |
| Variovorax sp. SCN45 | 0.60 | GFF1796 | | NADP-dependent malic enzyme (EC 1.1.1.40) | 0.48 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | — | — |
| Castellaniella sp019104865 MT123 | 0.60 | ABCV34_RS01715 | | NADP-dependent malic enzyme | 0.28 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | 0.32 | 7 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.60 | GFF3306 | | NADP-dependent malic enzyme (EC 1.1.1.40) | 0.49 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 90 |
| Magnetospirillum magneticum AMB-1 | 0.60 | AMB_RS03695 | | NADP-dependent malic enzyme | 0.29 | AMB_RS00120 | | YggS family pyridoxal phosphate-dependent enzyme | 0.70 | 25 |
| Lysobacter sp. OAE881 | 0.60 | ABIE51_RS18820 | | NADP-dependent malic enzyme | 0.42 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 62 |
| Acidovorax sp. GW101-3H11 | 0.59 | Ac3H11_1079 | | NADP-dependent malic enzyme (EC 1.1.1.40) | 0.46 | Ac3H11_4474 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 79 |
| Azospirillum sp. SherDot2 | 0.59 | MPMX19_04254 | | NADP-dependent malic enzyme | 0.28 | MPMX19_00050 | | Pyridoxal phosphate homeostasis protein | low | > 112 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.59 | Xcc-8004.1035.1 | | NADP-dependent malic enzyme (EC 1.1.1.40) | 0.44 | Xcc-8004.1711.1 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Rhodanobacter sp. FW510-T8 | 0.58 | OKGIIK_12705 | pta | NADP-dependent malic enzyme | 0.25 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.58 | ABZR86_RS12415 | | NADP-dependent malic enzyme | 0.27 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.58 | LRK54_RS11170 | | NADP-dependent malic enzyme | 0.26 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.58 | LRK55_RS10875 | | NADP-dependent malic enzyme | 0.27 | LRK55_RS08955 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Caulobacter crescentus NA1000 | 0.57 | CCNA_02704 | | NADP-dependent malic enzyme | 0.28 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.57 | CCNA_02704 | | NADP-dependent malic enzyme | 0.28 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | low | > 67 |
| Azospirillum brasilense Sp245 | 0.56 | AZOBR_RS21145 | | NADP-dependent malic enzyme | 0.30 | AZOBR_RS01870 | | alanine racemase | — | — |
| Rhizobium sp. OAE497 | 0.55 | ABIE40_RS10450 | | NADP-dependent malic enzyme | 0.26 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Sinorhizobium meliloti 1021 | 0.55 | SMc00169 | | malic enzyme | 0.24 | SMc02812 | | hypothetical protein | low | > 103 |
| Phaeobacter inhibens DSM 17395 | 0.54 | PGA1_c11910 | | Malate dehydrogenase (decarboxylating) (EC 1.1.1.39) (from data) | 0.26 | PGA1_c33360 | | putative alanine racemase | low | > 62 |
| Agrobacterium fabrum C58 | 0.54 | Atu1652 | | NADP-dependent malic enzyme | 0.27 | Atu2747 | | hypothetical protein | — | — |
| Bosea sp. OAE506 | 0.52 | ABIE41_RS21715 | | NADP-dependent malic enzyme | 0.29 | ABIE41_RS04720 | | YggS family pyridoxal phosphate-dependent enzyme | 0.45 | 56 |
| Dinoroseobacter shibae DFL-12 | 0.52 | Dshi_0826 | | malic protein NAD-binding (RefSeq) | 0.32 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | 0.36 | 30 |
| Rhodopseudomonas palustris CGA009 | 0.51 | TX73_015740 | | NADP-dependent malic enzyme | 0.28 | TX73_014475 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Phocaeicola vulgatus CL09T03C04 | 0.47 | HMPREF1058_RS02110 | | NADP-dependent malic enzyme | 0.24 | HMPREF1058_RS06240 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 67 |
| Bacteroides stercoris CC31F | 0.47 | HMPREF1181_RS07830 | | NADP-dependent malic enzyme | 0.25 | HMPREF1181_RS10865 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 56 |
| Phocaeicola dorei CL03T12C01 | 0.46 | ABI39_RS01295 | | NADP-dependent malic enzyme | 0.24 | ABI39_RS20000 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 72 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.46 | CA265_RS19000 | | NADP-dependent malic enzyme | 0.29 | CA265_RS06285 | | YggS family pyridoxal phosphate enzyme | low | > 88 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.46 | Echvi_4081 | | Malic enzyme | 0.25 | Echvi_2233 | | pyridoxal phosphate enzyme, YggS family | low | > 79 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.46 | BT1969 | | NADP-dependent malate dehydrogenase (NCBI ptt file) | 0.26 | BT1332 | | conserved hypothetical protein (NCBI ptt file) | low | > 81 |
| Bacteroides ovatus ATCC 8483 | 0.46 | BACOVA_00097 | | phosphate acetyl/butyryl transferase | 0.24 | BACOVA_00593 | | pyridoxal phosphate enzyme, YggS family | low | > 94 |
| Parabacteroides merdae CL09T00C40 | 0.45 | HMPREF1078_RS07665 | | NADP-dependent malic enzyme | 0.26 | HMPREF1078_RS15965 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.45 | CA264_14540 | | NADP-dependent malic enzyme | 0.27 | CA264_06410 | | YggS family pyridoxal phosphate enzyme | low | > 74 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.44 | ABZR88_RS18305 | | NADP-dependent malic enzyme | 0.29 | ABZR88_RS11740 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Rhodospirillum rubrum S1H | 0.42 | Rru_A3542 | | malate dehydrogenase (NCBI) | 0.30 | Rru_A1141 | | Protein of unknown function UPF0001 (NCBI) | low | > 58 |
| Sphingomonas koreensis DSMZ 15582 | 0.42 | Ga0059261_3786 | | Malic enzyme | 0.28 | Ga0059261_2216 | | pyridoxal phosphate enzyme, YggS family | low | > 68 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.41 | A4249_RS13295 | | NADP-dependent malic enzyme | 0.25 | A4249_RS13760 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
Not shown: 0 genomes with orthologs for GFF2198 only; 30 genomes with orthologs for GFF3054 only