| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Phaeobacter inhibens DSM 17395 | 1.0 | PGA1_c11960 | | uracil phosphoribosyltransferase Upp | 1.0 | PGA1_c30120 | | cytochrome c oxidase subunit 1 | 0.27 | 14 |
| Dinoroseobacter shibae DFL-12 | 0.83 | Dshi_0831 | | uracil phosphoribosyltransferase (RefSeq) | 0.83 | Dshi_0661 | | cytochrome c oxidase, cbb3-type, subunit I (RefSeq) | low | > 64 |
| Agrobacterium fabrum C58 | 0.73 | Atu0135 | | uracil phosphoribosyltransferase | 0.69 | Atu1537 | | cytochrome-c oxidase, FixN chain | low | > 89 |
| Rhizobium sp. OAE497 | 0.72 | ABIE40_RS00825 | | uracil phosphoribosyltransferase | 0.69 | ABIE40_RS26170 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.71 | SMc04121 | | uracil phosphoribosyltransferase | 0.70 | SMa0765 | | cbb3-type cytochrome c oxidase subunit I | low | > 103 |
| Acidovorax sp. GW101-3H11 | 0.67 | Ac3H11_2428 | | Uracil phosphoribosyltransferase (EC 2.4.2.9) | 0.53 | Ac3H11_968 | | Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) | low | > 79 |
| Cupriavidus basilensis FW507-4G11 | 0.66 | RR42_RS30815 | | uracil phosphoribosyltransferase | 0.56 | RR42_RS12910 | | cbb3-type cytochrome c oxidase subunit I | low | > 128 |
| Bosea sp. OAE506 | 0.65 | ABIE41_RS22700 | | uracil phosphoribosyltransferase | 0.65 | ABIE41_RS10565 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 77 |
| Variovorax sp. OAS795 | 0.64 | ABID97_RS16850 | | uracil phosphoribosyltransferase | 0.53 | ABID97_RS16225 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 91 |
| Variovorax sp. SCN45 | 0.64 | GFF324 | | Uracil phosphoribosyltransferase (EC 2.4.2.9) | 0.52 | GFF6964 | | Cytochrome c oxidase (cbb3-type) subunit CcoN (EC 1.9.3.1) | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.64 | GFF1179 | | Uracil phosphoribosyltransferase (EC 2.4.2.9) | 0.56 | GFF4135 | | Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) | low | > 90 |
| Caulobacter crescentus NA1000 | 0.61 | CCNA_02351 | | uracil phosphoribosyltransferase | 0.65 | CCNA_01467 | | cytochrome cbb3 oxidase subunit I ccoN | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.61 | CCNA_02351 | | uracil phosphoribosyltransferase | 0.65 | CCNA_01467 | | cytochrome cbb3 oxidase subunit I ccoN | low | > 67 |
| Rhodospirillum rubrum S1H | 0.60 | Rru_A2255 | | Uracil phosphoribosyl transferase (NCBI) | 0.63 | Rru_A3332 | | Cytochrome c oxidase cbb3-type, subunit I (NCBI) | — | — |
| Herbaspirillum seropedicae SmR1 | 0.60 | HSERO_RS03500 | | uracil phosphoribosyltransferase | 0.55 | HSERO_RS16055 | | cytochrome oxidase subunit I | low | > 78 |
| Azospirillum sp. SherDot2 | 0.59 | MPMX19_02205 | | Uracil phosphoribosyltransferase | 0.62 | MPMX19_00206 | | Cytochrome c oxidase subunit 1, bacteroid | low | > 112 |
| Azospirillum brasilense Sp245 | 0.59 | AZOBR_RS03150 | | uracil phosphoribosyltransferase | 0.63 | AZOBR_RS01180 | | peptidase S41 | low | > 97 |
| Ralstonia solanacearum GMI1000 | 0.59 | RS_RS10980 | | uracil phosphoribosyltransferase | 0.53 | RS_RS06395 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.59 | RALBFv3_RS03530 | | uracil phosphoribosyltransferase | 0.53 | RALBFv3_RS15615 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 76 |
| Ralstonia solanacearum UW163 | 0.59 | UW163_RS10140 | | uracil phosphoribosyltransferase | 0.53 | UW163_RS13075 | | cytochrome-c oxidase, cbb3-type subunit I | — | — |
| Ralstonia sp. UNC404CL21Col | 0.58 | ABZR87_RS15395 | | uracil phosphoribosyltransferase | 0.54 | ABZR87_RS11145 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.58 | RPSI07_RS13695 | | uracil phosphoribosyltransferase | 0.54 | RPSI07_RS17740 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 81 |
| Vibrio cholerae E7946 ATCC 55056 | 0.53 | CSW01_11345 | | uracil phosphoribosyltransferase | 0.54 | CSW01_07230 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 62 |
| Shewanella sp. ANA-3 | 0.52 | Shewana3_2544 | upp | uracil phosphoribosyltransferase (RefSeq) | 0.55 | Shewana3_2107 | | cytochrome c oxidase, cbb3-type, subunit I (RefSeq) | low | > 73 |
| Pseudomonas putida KT2440 | 0.52 | PP_0746 | | Uracil phosphoribosyltransferase | 0.56 | PP_4250 | | cytochrome c oxidase subunit I, cbb3-type | low | > 96 |
| Shewanella oneidensis MR-1 | 0.52 | SO2759 | upp | uracil phosphoribosyltransferase (NCBI ptt file) | 0.55 | SO2364 | ccoN | cytochrome c oxidase, cbb3-type, subunit I (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.51 | Sama_2096 | upp | uracil phosphoribosyltransferase (RefSeq) | 0.55 | Sama_1791 | | cytochrome c oxidase, cbb3-type, subunit I (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.51 | Shew_1514 | upp | uracil phosphoribosyltransferase (RefSeq) | 0.55 | Shew_1985 | | cytochrome c oxidase, cbb3-type, subunit I (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.51 | MIT1002_02893 | | Uracil phosphoribosyltransferase | 0.55 | MIT1002_02129 | | hypothetical protein | low | > 70 |
| Pseudomonas fluorescens SBW25 | 0.51 | PFLU_RS04485 | | uracil phosphoribosyltransferase | 0.57 | PFLU_RS22320 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.51 | Pf6N2E2_5235 | | Uracil phosphoribosyltransferase (EC 2.4.2.9) | 0.55 | Pf6N2E2_2305 | | Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) | low | > 103 |
| Pseudomonas fluorescens SBW25-INTG | 0.51 | PFLU_RS04485 | | uracil phosphoribosyltransferase | 0.57 | PFLU_RS22320 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_16565 | | uracil phosphoribosyltransferase | 0.55 | AO356_02405 | | cytochrome C oxidase Cbb3 | low | > 104 |
| Pseudomonas sp. RS175 | 0.51 | PFR28_03641 | | Uracil phosphoribosyltransferase | 0.56 | PFR28_01095 | | Cbb3-type cytochrome c oxidase subunit CcoN1 | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.50 | AO353_14855 | | uracil phosphoribosyltransferase | 0.55 | AO353_00585 | | cytochrome C oxidase Cbb3 | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.50 | PfGW456L13_1597 | | Uracil phosphoribosyltransferase (EC 2.4.2.9) | 0.56 | PfGW456L13_4056 | | Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) | 0.34 | 11 |
| Castellaniella sp019104865 MT123 | 0.50 | ABCV34_RS15380 | | uracil phosphoribosyltransferase | 0.54 | ABCV34_RS06870 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 48 |
| Marinobacter adhaerens HP15 | 0.50 | HP15_2306 | | uracil phosphoribosyltransferase | 0.55 | HP15_2107 | | cytochrome c oxidase, cbb3-type, subunit I | — | — |
| Dechlorosoma suillum PS | 0.50 | Dsui_2333 | | uracil phosphoribosyltransferase | 0.54 | Dsui_1627 | | cytochrome c oxidase, cbb3-type, subunit I | — | — |
| Pseudomonas simiae WCS417 | 0.50 | PS417_04435 | | uracil phosphoribosyltransferase | 0.57 | PS417_20700 | | cbb3-type cytochrome c oxidase subunit I | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.50 | Psest_1120 | | uracil phosphoribosyltransferase | 0.56 | Psest_2527 | | cytochrome c oxidase, cbb3-type, subunit I | low | > 67 |
| Pseudomonas sp. S08-1 | 0.50 | OH686_17985 | | uracil phosphoribosyltransferase | 0.57 | OH686_02175 | | cytochrome c oxidase, cbb3-type, subunit I | low | > 80 |
| Pseudomonas fluorescens FW300-N1B4 | 0.50 | Pf1N1B4_2934 | | Uracil phosphoribosyltransferase (EC 2.4.2.9) | 0.56 | Pf1N1B4_3884 | | Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) | low | > 87 |
| Dyella japonica UNC79MFTsu3.2 | 0.50 | ABZR86_RS09615 | | uracil phosphoribosyltransferase | 0.48 | ABZR86_RS04450 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 74 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.49 | Psyr_0969 | | uracil phosphoribosyltransferase | 0.55 | Psyr_3413 | | Cytochrome c oxidase cbb3-type, subunit I | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.49 | Psyr_0969 | | uracil phosphoribosyltransferase | 0.55 | Psyr_3413 | | Cytochrome c oxidase cbb3-type, subunit I | — | — |
| Rhodanobacter denitrificans MT42 | 0.48 | LRK55_RS02920 | | uracil phosphoribosyltransferase | 0.48 | LRK55_RS17455 | | cytochrome-c oxidase, cbb3-type subunit I | 0.71 | 5 |
| Rhodanobacter denitrificans FW104-10B01 | 0.48 | LRK54_RS03170 | | uracil phosphoribosyltransferase | 0.48 | LRK54_RS17230 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 59 |
| Lysobacter sp. OAE881 | 0.48 | ABIE51_RS15050 | | uracil phosphoribosyltransferase | 0.53 | ABIE51_RS03855 | | cytochrome-c oxidase, cbb3-type subunit I | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.47 | OKGIIK_10040 | upp | uracil phosphoribosyltransferase | 0.48 | OKGIIK_07655 | ccoN | cytochrome-c oxidase, cbb3-type subunit I | low | > 52 |
| Synechococcus elongatus PCC 7942 | 0.39 | Synpcc7942_1715 | upp | uracil phosphoribosyltransferase | 0.16 | Synpcc7942_0202 | ccoN | Cbb3-type cytochrome oxidase subunit 1-like | — | — |
Not shown: 48 genomes with orthologs for PGA1_c11960 only; 3 genomes with orthologs for PGA1_c30120 only