Conservation of cofitness between GFF5485 and GFF2032 in Hydrogenophaga sp. GW460-11-11-14-LB1

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF5485 DNA mismatch repair protein MutL 1.0 GFF2032 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) 0.62 20
Variovorax sp. SCN45 0.66 GFF4800 DNA mismatch repair protein MutL 0.23 GFF5033 ABC-type spermidine/putrescine transport system, permease component II low > 127
Acidovorax sp. GW101-3H11 0.64 Ac3H11_313 DNA mismatch repair protein MutL 0.21 Ac3H11_1612 ABC transporter, permease protein low > 79
Variovorax sp. OAS795 0.64 ABID97_RS20310 DNA mismatch repair endonuclease MutL 0.22 ABID97_RS04045 ABC transporter permease low > 91
Ralstonia solanacearum GMI1000 0.49 RS_RS12850 DNA mismatch repair protein MutL 0.15 RS_RS08745 ABC transporter permease low > 80
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS04190 DNA mismatch repair protein 0.18 HSERO_RS05400 polyamine ABC transporter permease low > 78
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS00870 DNA mismatch repair endonuclease MutL 0.20 ABZR87_RS22470 ABC transporter permease low > 80
Ralstonia solanacearum UW163 0.48 UW163_RS08395 DNA mismatch repair endonuclease MutL 0.15 UW163_RS14560 ABC transporter permease — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS05230 DNA mismatch repair endonuclease MutL 0.15 RALBFv3_RS01250 ABC transporter permease — —
Ralstonia solanacearum PSI07 0.47 RPSI07_RS12070 DNA mismatch repair endonuclease MutL 0.15 RPSI07_RS16225 ABC transporter permease low > 81
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_04712 DNA mismatch repair protein MutL 0.43 H281DRAFT_05183 putrescine transport system permease protein low > 103
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS26435 DNA mismatch repair endonuclease MutL 0.45 QEN71_RS12960 ABC transporter permease subunit — —
Castellaniella sp019104865 MT123 0.43 ABCV34_RS08785 DNA mismatch repair endonuclease MutL 0.41 ABCV34_RS02375 ABC transporter permease subunit low > 48
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2256.1 DNA mismatch repair protein MutL 0.40 Xcc-8004.2212.1 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) low > 74
Pseudomonas stutzeri RCH2 0.42 Psest_0681 DNA mismatch repair protein MutL 0.41 Psest_4280 ABC-type spermidine/putrescine transport system, permease component II low > 67
Marinobacter adhaerens HP15 0.41 HP15_2501 DNA mismatch repair protein mutL 0.43 HP15_937 spermidine/putrescine ABC transporter, permease protein low > 73
Pseudomonas putida KT2440 0.41 PP_4896 DNA mismatch repair protein MutL 0.40 PP_5177 spermidine/putrescine ABC transporter - permease subunit low > 96
Pseudomonas fluorescens SBW25 0.41 PFLU_RS02560 DNA mismatch repair endonuclease MutL 0.40 PFLU_RS28755 ABC transporter permease subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS02560 DNA mismatch repair endonuclease MutL 0.40 PFLU_RS28755 ABC transporter permease subunit low > 109
Pseudomonas simiae WCS417 0.41 PS417_02480 DNA mismatch repair protein 0.40 PS417_27105 spermidine/putrescine ABC transporter permease low > 88
Pseudomonas sp. S08-1 0.41 OH686_09480 DNA mismatch repair protein MutL 0.41 OH686_11445 Putrescine transport system permease protein PotI low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_0570 DNA mismatch repair protein MutL 0.39 Psyr_4861 Binding-protein-dependent transport systems inner membrane component low > 86
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_0570 DNA mismatch repair protein MutL 0.39 Psyr_4861 Binding-protein-dependent transport systems inner membrane component low > 86
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_13135 DNA mismatch repair protein 0.41 AO353_29320 putrescine ABC transporter, permease component (from data) low > 101
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_3616 DNA mismatch repair protein MutL 0.39 Pf6N2E2_4517 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) low > 103
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1414 DNA mismatch repair protein MutL 0.41 Pf1N1B4_4350 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) low > 87
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_156 DNA mismatch repair protein MutL 0.39 PfGW456L13_932 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) low > 87
Pseudomonas sp. RS175 0.39 PFR28_05119 DNA mismatch repair protein MutL 0.41 PFR28_04291 Inner membrane ABC transporter permease protein YdcV low > 88
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_08665 DNA mismatch repair protein 0.39 AO356_13175 spermidine/putrescine ABC transporter permease low > 104
Magnetospirillum magneticum AMB-1 0.32 AMB_RS22340 DNA mismatch repair protein MutL 0.47 AMB_RS13195 putrescine ABC transporter permease PotI — —
Phaeobacter inhibens DSM 17395 0.32 PGA1_c32740 DNA mismatch repair protein MutL 0.40 PGA1_c34450 putrescine transport system permease protein PotI low > 62
Rhodopseudomonas palustris CGA009 0.32 TX73_022655 DNA mismatch repair endonuclease MutL 0.40 TX73_021555 ABC transporter permease subunit low > 86
Rhizobium sp. OAE497 0.32 ABIE40_RS05235 DNA mismatch repair endonuclease MutL 0.40 ABIE40_RS03280 ABC transporter permease subunit low > 107
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_00731 DNA mismatch repair protein mutL 0.28 CCNA_03236 spermidine/putrescine transport system permease protein potC low > 67
Caulobacter crescentus NA1000 0.32 CCNA_00731 DNA mismatch repair protein mutL 0.28 CCNA_03236 spermidine/putrescine transport system permease protein potC low > 66
Azospirillum brasilense Sp245 0.31 AZOBR_RS05025 DNA mismatch repair protein MutL 0.46 AZOBR_RS08830 putrescine/spermidine ABC transporter permease low > 97
Azospirillum sp. SherDot2 0.31 MPMX19_01619 DNA mismatch repair protein MutL 0.47 MPMX19_04880 Inner membrane ABC transporter permease protein YdcV low > 112
Bosea sp. OAE506 0.31 ABIE41_RS23235 DNA mismatch repair endonuclease MutL 0.35 ABIE41_RS21635 ABC transporter permease subunit low > 77
Dinoroseobacter shibae DFL-12 0.30 Dshi_0363 DNA mismatch repair protein MutL (RefSeq) 0.18 Dshi_1598 binding-protein-dependent transport systems inner membrane component (RefSeq) low > 64
Sinorhizobium meliloti 1021 0.30 SMc00932 DNA mismatch repair protein 0.41 SMc00773 putrescine ABC transporter permease low > 103
Agrobacterium fabrum C58 0.30 Atu0699 DNA mismatch repair protein MutL 0.39 Atu0612 ABC transporter, membrane spanning protein low > 89
Rhodospirillum rubrum S1H 0.30 Rru_A2946 DNA mismatch repair protein (NCBI) 0.46 Rru_A1015 Binding-protein-dependent transport systems inner membrane component (NCBI) low > 58
Pantoea sp. MT58 0.28 IAI47_02580 DNA mismatch repair endonuclease MutL 0.43 IAI47_13030 putrescine ABC transporter permease PotI low > 76
Enterobacter asburiae PDN3 0.26 EX28DRAFT_3367 DNA mismatch repair protein MutL 0.41 EX28DRAFT_2096 ABC-type spermidine/putrescine transport system, permease component II low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF823 DNA mismatch repair protein MutL 0.42 GFF761 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) low > 78
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_01825 DNA mismatch repair protein MutL 0.25 CSW01_07150 spermidine/putrescine ABC transporter permease PotC low > 62
Serratia liquefaciens MT49 0.26 IAI46_01615 DNA mismatch repair endonuclease MutL 0.43 IAI46_08385 putrescine ABC transporter permease PotI low > 86
Enterobacter sp. TBS_079 0.26 MPMX20_00451 DNA mismatch repair protein MutL 0.41 MPMX20_01498 Inner membrane ABC transporter permease protein YdcV low > 85
Rahnella sp. WP5 0.25 EX31_RS08830 DNA mismatch repair endonuclease MutL 0.42 EX31_RS09615 putrescine ABC transporter permease PotI low > 89
Klebsiella michiganensis M5al 0.25 BWI76_RS02525 DNA mismatch repair protein MutL 0.39 BWI76_RS09475 putrescine ABC transporter permease PotI low > 92
Escherichia fergusonii Becca 0.25 EFB2_04365 DNA mismatch repair protein MutL 0.40 EFB2_03204 Inner membrane ABC transporter permease protein YdcV low > 86
Escherichia coli BL21 0.25 ECD_04037 methyl-directed mismatch repair protein 0.39 ECD_00862 putrescine ABC transporter permease low > 61
Pectobacterium carotovorum WPP14 0.25 HER17_RS02575 DNA mismatch repair endonuclease MutL 0.41 HER17_RS12485 putrescine ABC transporter permease PotI low > 75
Escherichia coli BW25113 0.25 b4170 mutL DNA mismatch repair protein (NCBI) 0.40 b0857 potI putrescine transporter subunit: membrane component of ABC superfamily (NCBI) low > 76
Escherichia coli Nissle 1917 0.25 ECOLIN_RS24220 DNA mismatch repair endonuclease MutL 0.40 ECOLIN_RS04565 putrescine ABC transporter permease PotI — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.25 OHPLBJKB_03872 DNA mismatch repair protein MutL 0.39 OHPLBJKB_02811 Inner membrane ABC transporter permease protein YdcV low > 73
Escherichia coli ECRC62 0.25 BNILDI_06960 mutL DNA mismatch repair endonuclease MutL 0.40 BNILDI_20570 potH putrescine ABC transporter permease PotH low > 75
Escherichia coli ECOR27 0.25 NOLOHH_04530 mutL DNA mismatch repair endonuclease MutL 0.40 NOLOHH_22315 potI putrescine ABC transporter permease PotI low > 75
Escherichia coli ECOR38 0.25 HEPCGN_10495 mutL DNA mismatch repair endonuclease MutL 0.39 HEPCGN_02085 potI putrescine ABC transporter permease PotI low > 87
Escherichia coli ECRC102 0.25 NIAGMN_10115 mutL DNA mismatch repair endonuclease MutL 0.40 NIAGMN_03990 potI putrescine ABC transporter permease PotI — —
Escherichia coli ECRC100 0.25 OKFHMN_12265 mutL DNA mismatch repair endonuclease MutL 0.40 OKFHMN_05945 potI putrescine ABC transporter permease PotI low > 80
Escherichia coli ECRC101 0.25 MCAODC_02780 mutL DNA mismatch repair endonuclease MutL 0.40 MCAODC_25160 potI putrescine ABC transporter permease PotI low > 87
Escherichia coli ECRC98 0.25 JDDGAC_15905 mutL DNA mismatch repair endonuclease MutL 0.40 JDDGAC_09580 potI putrescine ABC transporter permease PotI low > 86
Escherichia coli ECRC99 0.25 KEDOAH_15890 mutL DNA mismatch repair endonuclease MutL 0.40 KEDOAH_21965 potI putrescine ABC transporter permease PotI — —
Parabacteroides merdae CL09T00C40 0.23 HMPREF1078_RS17005 DNA mismatch repair endonuclease MutL 0.20 HMPREF1078_RS08110 ABC transporter permease low > 61
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS02285 DNA mismatch repair endonuclease MutL 0.18 ABI39_RS17810 ABC transporter permease low > 72
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS02970 DNA mismatch repair endonuclease MutL 0.18 HMPREF1058_RS03230 ABC transporter permease low > 67
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS07405 DNA mismatch repair endonuclease MutL 0.20 HMPREF1181_RS12430 ABC transporter permease — —
Shewanella oneidensis MR-1 0.21 SO0601 mutL DNA mismatch repair protein MutL (NCBI ptt file) 0.44 SO1273 polyamine ABC transporter, permease protein (NCBI ptt file) low > 76

Not shown: 18 genomes with orthologs for GFF5485 only; 11 genomes with orthologs for GFF2032 only