Conservation of cofitness between GFF581 and GFF1332 in Hydrogenophaga sp. GW460-11-11-14-LB1

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF581 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) 1.0 GFF1332 Shikimate kinase I (EC 2.7.1.71) 0.69 16
Acidovorax sp. GW101-3H11 0.86 Ac3H11_4034 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) 0.58 Ac3H11_3449 Shikimate kinase I (EC 2.7.1.71) 0.96 3
Variovorax sp. OAS795 0.84 ABID97_RS06345 3-deoxy-7-phosphoheptulonate synthase 0.60 ABID97_RS23260 shikimate kinase — —
Variovorax sp. SCN45 0.84 GFF4447 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) 0.54 GFF5324 Shikimate kinase I (EC 2.7.1.71) low > 127
Ralstonia solanacearum GMI1000 0.62 RS_RS13320 3-deoxy-7-phosphoheptulonate synthase 0.57 RS_RS14885 shikimate kinase low > 80
Ralstonia solanacearum PSI07 0.62 RPSI07_RS11845 3-deoxy-7-phosphoheptulonate synthase 0.56 RPSI07_RS10295 shikimate kinase — —
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS01110 3-deoxy-7-phosphoheptulonate synthase AroG 0.57 ABZR87_RS02595 shikimate kinase 0.78 26
Ralstonia solanacearum UW163 0.61 UW163_RS08165 3-deoxy-7-phosphoheptulonate synthase 0.56 UW163_RS06675 shikimate kinase — —
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS05460 3-deoxy-7-phosphoheptulonate synthase 0.56 RALBFv3_RS06940 shikimate kinase 0.79 2
Paraburkholderia sabiae LMG 24235 0.61 QEN71_RS26560 3-deoxy-7-phosphoheptulonate synthase AroG 0.54 QEN71_RS28040 shikimate kinase 0.59 18
Paraburkholderia graminis OAS925 0.60 ABIE53_000850 3-deoxy-7-phosphoheptulonate synthase 0.57 ABIE53_003741 shikimate kinase — —
Dechlorosoma suillum PS 0.60 Dsui_3444 phospho-2-dehydro-3-deoxyheptonate aldolase 0.41 Dsui_1094 shikimate kinase low > 51
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS03535 phospho-2-dehydro-3-deoxyheptonate aldolase 0.55 BPHYT_RS17890 shikimate kinase 0.81 20
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_04687 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 0.55 H281DRAFT_05614 shikimate kinase — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS05860 phospho-2-dehydro-3-deoxyheptonate aldolase 0.56 RR42_RS19010 shikimate kinase 0.76 28
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_19270 3-deoxy-7-phosphoheptulonate synthase 0.37 CSW01_13305 shikimate kinase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.58 Xcc-8004.704.1 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) 0.31 Xcc-8004.1616.1 Shikimate kinase I (EC 2.7.1.71) low > 74
Shewanella sp. ANA-3 0.58 Shewana3_3528 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) 0.36 Shewana3_3894 aroK shikimate kinase I (RefSeq) — —
Rhodanobacter denitrificans FW104-10B01 0.57 LRK54_RS02730 3-deoxy-7-phosphoheptulonate synthase 0.33 LRK54_RS04305 shikimate kinase 0.26 23
Rhodanobacter denitrificans MT42 0.57 LRK55_RS02485 3-deoxy-7-phosphoheptulonate synthase 0.32 LRK55_RS04080 shikimate kinase — —
Erwinia tracheiphila SCR3 0.57 LU632_RS15925 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 0.37 LU632_RS22870 aroK shikimate kinase AroK — —
Enterobacter asburiae PDN3 0.57 EX28DRAFT_2241 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) 0.37 EX28DRAFT_4152 shikimate kinase (EC 2.7.1.71) low > 76
Rhodanobacter sp. FW510-T8 0.57 OKGIIK_09785 3-deoxy-7-phosphoheptulonate synthase 0.32 OKGIIK_11180 Shikimate kinase low > 52
Shewanella loihica PV-4 0.57 Shew_0851 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) 0.35 Shew_0213 shikimate kinase I (RefSeq) — —
Shewanella oneidensis MR-1 0.57 SO0756 aroG phospho-2-dehydro-3-deoxyheptonate aldolase, phe-sensitive (NCBI ptt file) 0.36 SO0286 aroK shikimate kinase (NCBI ptt file) — —
Castellaniella sp019104865 MT123 0.57 ABCV34_RS06825 3-deoxy-7-phosphoheptulonate synthase AroG 0.38 ABCV34_RS12700 shikimate kinase — —
Klebsiella michiganensis M5al 0.57 BWI76_RS08600 3-deoxy-7-phosphoheptulonate synthase 0.37 BWI76_RS26090 shikimate kinase — —
Escherichia coli Nissle 1917 0.57 ECOLIN_RS04015 3-deoxy-7-phosphoheptulonate synthase AroG 0.36 ECOLIN_RS19365 shikimate kinase AroK — —
Escherichia fergusonii Becca 0.57 EFB2_03352 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive 0.36 EFB2_00438 Shikimate kinase 1 low > 86
Escherichia coli ECOR38 0.57 HEPCGN_01535 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 0.36 HEPCGN_15930 aroK shikimate kinase AroK — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_02959 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive 0.36 OHPLBJKB_00313 Shikimate kinase 1 — —
Escherichia coli BL21 0.56 ECD_00707 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible 0.36 ECD_03242 shikimate kinase I low > 60
Escherichia coli ECOR27 0.56 NOLOHH_23170 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 0.36 NOLOHH_08900 aroK shikimate kinase AroK — —
Escherichia coli BW25113 0.56 b0754 aroG 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI) 0.36 b3390 aroK shikimate kinase I (NCBI) 0.19 58
Enterobacter sp. TBS_079 0.56 MPMX20_01381 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive 0.37 MPMX20_04279 Shikimate kinase 1 low > 85
Rahnella sp. WP5 0.56 EX31_RS23545 3-deoxy-7-phosphoheptulonate synthase AroG 0.36 EX31_RS04725 shikimate kinase AroK low > 89
Dickeya dadantii 3937 0.56 DDA3937_RS06560 3-deoxy-7-phosphoheptulonate synthase AroG 0.32 DDA3937_RS19550 shikimate kinase AroK — —
Pectobacterium carotovorum WPP14 0.56 HER17_RS14805 3-deoxy-7-phosphoheptulonate synthase AroG 0.36 HER17_RS01775 shikimate kinase AroK — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF8 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) 0.34 GFF629 Shikimate kinase I (EC 2.7.1.71) — —
Pantoea sp. MT58 0.56 IAI47_13605 3-deoxy-7-phosphoheptulonate synthase AroG 0.37 IAI47_01890 shikimate kinase AroK — —
Dickeya dianthicola 67-19 0.56 HGI48_RS06605 3-deoxy-7-phosphoheptulonate synthase AroG 0.32 HGI48_RS19680 shikimate kinase AroK — —
Escherichia coli ECRC62 0.56 BNILDI_21165 aroG 3-deoxy-7-phosphoheptulonate synthase AroG 0.36 BNILDI_02620 aroK shikimate kinase AroK — —
Dickeya dianthicola ME23 0.56 DZA65_RS06960 3-deoxy-7-phosphoheptulonate synthase AroG 0.32 DZA65_RS20765 shikimate kinase AroK — —
Serratia liquefaciens MT49 0.56 IAI46_06405 3-deoxy-7-phosphoheptulonate synthase AroG 0.37 IAI46_23705 shikimate kinase AroK — —
Shewanella amazonensis SB2B 0.55 Sama_0657 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) 0.36 Sama_3368 aroK shikimate kinase I (RefSeq) — —
Caulobacter crescentus NA1000 0.55 CCNA_01463 3-deoxy-7-phosphoheptulonate synthase 0.30 CCNA_03103 shikimate kinase (EC 2.7.1.71) (from data) low > 66
Caulobacter crescentus NA1000 Δfur 0.55 CCNA_01463 3-deoxy-7-phosphoheptulonate synthase 0.30 CCNA_03103 shikimate kinase low > 67
Acinetobacter radioresistens SK82 0.48 MPMX26_01673 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive 0.41 MPMX26_02811 Shikimate kinase 1 — —
Pseudomonas stutzeri RCH2 0.47 Psest_2331 phospho-2-dehydro-3-deoxyheptonate aldolase 0.38 Psest_3714 Shikimate kinase — —
Pseudomonas putida KT2440 0.47 PP_2324 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase 0.36 PP_5079 Shikimate kinase — —
Pseudomonas fluorescens SBW25 0.47 PFLU_RS08380 3-deoxy-7-phosphoheptulonate synthase 0.37 PFLU_RS02025 shikimate kinase AroK — —
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS08380 3-deoxy-7-phosphoheptulonate synthase 0.37 PFLU_RS02025 shikimate kinase AroK — —
Pseudomonas simiae WCS417 0.47 PS417_08430 phospho-2-dehydro-3-deoxyheptonate aldolase 0.37 PS417_01980 shikimate kinase — —
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_289 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) 0.37 Pf1N1B4_1538 Shikimate kinase I (EC 2.7.1.71) — —
Pseudomonas sp. RS175 0.47 PFR28_00962 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive 0.37 PFR28_05012 Shikimate kinase 1 — —
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_19030 phospho-2-dehydro-3-deoxyheptonate aldolase 0.37 AO353_12500 shikimate kinase low > 101
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_2470 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) 0.37 Pf6N2E2_3755 Shikimate kinase I (EC 2.7.1.71) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_2073 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 0.36 Psyr_0408 shikimate kinase — —
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_2224 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) 0.37 PfGW456L13_276 Shikimate kinase I (EC 2.7.1.71) low > 87
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_2073 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 0.36 Psyr_0408 shikimate kinase — —
Alteromonas macleodii MIT1002 0.46 MIT1002_01314 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive 0.36 MIT1002_00448 Shikimate kinase 1 — —
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_03200 phospho-2-dehydro-3-deoxyheptonate aldolase 0.38 AO356_09390 shikimate kinase — —
Pseudomonas sp. S08-1 0.46 OH686_01760 3-deoxy-7-phosphoheptulonate synthase 0.37 OH686_10020 Shikimate kinase I low > 80
Marinobacter adhaerens HP15 0.46 HP15_1814 phospho-2-dehydro-3-heoxyheptonate aldolase 0.36 HP15_479 shikimate kinase I — —
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_1384 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) 0.35 B158DRAFT_0763 shikimate kinase (EC 2.7.1.71) — —

Not shown: 10 genomes with orthologs for GFF581 only; 8 genomes with orthologs for GFF1332 only