Conservation of cofitness between ECD_02743 and ECD_03238 in Escherichia coli BL21

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02743 5-formyltetrahydrofolate cyclo-ligase family protein 1.0 ECD_03238 D-ribulose-5-phosphate 3-epimerase low > 61
Escherichia fergusonii Becca 1.00 EFB2_00991 5-formyltetrahydrofolate cyclo-ligase 1.00 EFB2_00442 Ribulose-phosphate 3-epimerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00804 5-formyltetrahydrofolate cyclo-ligase 1.00 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC62 1.00 BNILDI_09930 ygfA 5-formyltetrahydrofolate cyclo-ligase 1.00 BNILDI_02600 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC98 1.00 JDDGAC_23125 ygfA 5-formyltetrahydrofolate cyclo-ligase 1.00 JDDGAC_20760 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC101 1.00 MCAODC_10005 ygfA 5-formyltetrahydrofolate cyclo-ligase 1.00 MCAODC_07660 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECOR27 1.00 NOLOHH_11395 ygfA 5-formyltetrahydrofolate cyclo-ligase 1.00 NOLOHH_08920 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC99 1.00 KEDOAH_08655 ygfA 5-formyltetrahydrofolate cyclo-ligase 1.00 KEDOAH_11010 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC100 1.00 OKFHMN_19485 ygfA 5-formyltetrahydrofolate cyclo-ligase 1.00 OKFHMN_17130 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC102 1.00 NIAGMN_17250 ygfA 5-formyltetrahydrofolate cyclo-ligase 1.00 NIAGMN_14900 dam adenine-specific DNA-methyltransferase — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS16205 5-formyltetrahydrofolate cyclo-ligase 1.00 ECOLIN_RS19345 ribulose-phosphate 3-epimerase low > 55
Escherichia coli BW25113 0.99 b2912 ygfA putative ligase (VIMSS) 1.00 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) low > 76
Escherichia coli ECOR38 0.99 HEPCGN_18775 ygfA 5-formyltetrahydrofolate cyclo-ligase 1.00 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF3012 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.97 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 78
Enterobacter sp. TBS_079 0.82 MPMX20_03770 5-formyltetrahydrofolate cyclo-ligase 0.97 MPMX20_04275 Ribulose-phosphate 3-epimerase low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS23915 5-formyltetrahydrofolate cyclo-ligase 0.96 BWI76_RS26070 ribulose-phosphate 3-epimerase — —
Enterobacter asburiae PDN3 0.78 EX28DRAFT_2964 5,10-methenyltetrahydrofolate synthetase 0.98 EX28DRAFT_4156 ribulose-phosphate 3-epimerase low > 76
Pectobacterium carotovorum WPP14 0.69 HER17_RS19095 5-formyltetrahydrofolate cyclo-ligase 0.87 HER17_RS01795 ribulose-phosphate 3-epimerase low > 75
Serratia liquefaciens MT49 0.66 IAI46_20895 5-formyltetrahydrofolate cyclo-ligase 0.89 IAI46_23685 ribulose-phosphate 3-epimerase low > 86
Dickeya dadantii 3937 0.64 DDA3937_RS02410 5-formyltetrahydrofolate cyclo-ligase 0.88 DDA3937_RS19530 ribulose-phosphate 3-epimerase — —
Rahnella sp. WP5 0.64 EX31_RS21480 5-formyltetrahydrofolate cyclo-ligase 0.89 EX31_RS04705 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola 67-19 0.62 HGI48_RS02370 5-formyltetrahydrofolate cyclo-ligase 0.88 HGI48_RS19660 ribulose-phosphate 3-epimerase — —
Erwinia tracheiphila SCR3 0.60 LU632_RS05860 5-formyltetrahydrofolate cyclo-ligase 0.86 LU632_RS22850 rpe ribulose-phosphate 3-epimerase — —
Shewanella loihica PV-4 0.59 Shew_3069 5-formyltetrahydrofolate cyclo-ligase (RefSeq) 0.87 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) — —
Pantoea sp. MT58 0.59 IAI47_03730 5-formyltetrahydrofolate cyclo-ligase 0.88 IAI47_01910 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola ME23 0.59 DZA65_RS02475 5-formyltetrahydrofolate cyclo-ligase 0.88 DZA65_RS20745 ribulose-phosphate 3-epimerase — —
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_12545 5-formyltetrahydrofolate cyclo-ligase 0.81 CSW01_13285 ribulose-phosphate 3-epimerase low > 62
Shewanella oneidensis MR-1 0.56 SO0774 5-formyltetrahydrofolate cyclo-ligase family protein (NCBI ptt file) 0.86 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.55 Shewana3_3506 5-formyltetrahydrofolate cyclo-ligase (RefSeq) 0.86 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) — —
Marinobacter adhaerens HP15 0.32 HP15_3211 5-formyltetrahydrofolate cyclo-ligase 0.74 HP15_3286 ribulose-phosphate 3-epimerase-like protein — —
Pseudomonas stutzeri RCH2 0.30 Psest_0170 5,10-methenyltetrahydrofolate synthetase 0.76 Psest_3652 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N1B4 0.30 Pf1N1B4_2225 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.76 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_08780 5-formyltetrahydrofolate cyclo-ligase 0.76 AO353_07240 ribulose phosphate epimerase — —
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS28965 5-formyltetrahydrofolate cyclo-ligase 0.77 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas simiae WCS417 0.29 PS417_27305 5-formyltetrahydrofolate cyclo-ligase 0.78 PS417_25735 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25 0.29 PFLU_RS28965 5-formyltetrahydrofolate cyclo-ligase 0.77 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_892 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.77 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas sp. S08-1 0.28 OH686_11225 5-formyltetrahydrofolate cyclo-ligase 0.76 OH686_15115 ribulose-phosphate 3-epimerase — —
Pseudomonas putida KT2440 0.27 PP_5203 5-formyltetrahydrofolate cyclo-ligase 0.77 PP_0415 ribulose-5-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_0317 5-formyltetrahydrofolate cyclo-ligase 0.77 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_4476 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.76 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_0317 5-formyltetrahydrofolate cyclo-ligase 0.77 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas sp. RS175 0.27 PFR28_04325 5-formyltetrahydrofolate cyclo-ligase 0.76 PFR28_04049 Ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_12990 5-formyltetrahydrofolate cyclo-ligase 0.76 AO356_14410 ribulose phosphate epimerase — —
Acinetobacter radioresistens SK82 0.25 MPMX26_02298 5-formyltetrahydrofolate cyclo-ligase 0.76 MPMX26_02569 Ribulose-phosphate 3-epimerase — —
Lysobacter sp. OAE881 0.24 ABIE51_RS17355 5-formyltetrahydrofolate cyclo-ligase 0.71 ABIE51_RS04135 ribulose-phosphate 3-epimerase — —
Variovorax sp. SCN45 0.23 GFF7649 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.62 GFF6246 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Agrobacterium fabrum C58 0.23 Atu3731 5-formyltetrahydrofolate cyclo-ligase 0.43 Atu1839 ribulose-phosphate 3-epimerase — —
Xanthomonas campestris pv. campestris strain 8004 0.22 Xcc-8004.1138.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.67 Xcc-8004.605.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Sinorhizobium meliloti 1021 0.21 SMc03974 hypothetical protein 0.45 SMc00511 D-ribulose-5-phosphate 3-epimerase low > 103
Parabacteroides merdae CL09T00C40 0.21 HMPREF1078_RS14635 5-formyltetrahydrofolate cyclo-ligase 0.38 HMPREF1078_RS00800 ribulose-phosphate 3-epimerase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.20 CA264_15880 5-formyltetrahydrofolate cyclo-ligase 0.43 CA264_21180 ribulose-phosphate 3-epimerase low > 74
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_2318 5-formyltetrahydrofolate cyclo-ligase (RefSeq) 0.39 DvMF_0977 Ribulose-phosphate 3-epimerase (RefSeq) — —
Rhizobium sp. OAE497 0.20 ABIE40_RS15645 5-formyltetrahydrofolate cyclo-ligase 0.43 ABIE40_RS10105 ribulose-phosphate 3-epimerase — —
Rhodanobacter denitrificans MT42 0.19 LRK55_RS11395 5-formyltetrahydrofolate cyclo-ligase 0.71 LRK55_RS11120 ribulose-phosphate 3-epimerase — —
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS11670 5-formyltetrahydrofolate cyclo-ligase 0.71 LRK54_RS11390 ribulose-phosphate 3-epimerase — —
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_12225 5-formyltetrahydrofolate cyclo-ligase 0.70 OKGIIK_12435 rpe ribulose-phosphate 3-epimerase — —
Bacteroides ovatus ATCC 8483 0.18 BACOVA_05091 5-formyltetrahydrofolate cyclo-ligase 0.38 BACOVA_01203 ribulose-phosphate 3-epimerase — —
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_03354 5-formyltetrahydrofolate cyclo-ligase 0.48 CCNA_00100 Ribulose-5-phosphate 3-epimerase — —
Caulobacter crescentus NA1000 0.18 CCNA_03354 5-formyltetrahydrofolate cyclo-ligase 0.48 CCNA_00100 Ribulose-5-phosphate 3-epimerase — —
Azospirillum brasilense Sp245 0.18 AZOBR_RS09025 5-formyltetrahydrofolate cyclo-ligase 0.46 AZOBR_RS06755 ribulose-phosphate 3-epimerase — —
Phocaeicola dorei CL03T12C01 0.18 ABI39_RS13145 5-formyltetrahydrofolate cyclo-ligase 0.38 ABI39_RS00225 ribulose-phosphate 3-epimerase — —
Rhodopseudomonas palustris CGA009 0.18 TX73_023120 5-formyltetrahydrofolate cyclo-ligase 0.40 TX73_019755 ribulose-phosphate 3-epimerase — —
Phocaeicola vulgatus CL09T03C04 0.18 HMPREF1058_RS17145 5-formyltetrahydrofolate cyclo-ligase 0.39 HMPREF1058_RS07710 ribulose-phosphate 3-epimerase — —
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS06170 5-formyltetrahydrofolate cyclo-ligase 0.38 HMPREF1181_RS06505 ribulose-phosphate 3-epimerase low > 56
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_0735 5,10-methenyltetrahydrofolate synthetase 0.50 Ga0059261_2240 ribulose-phosphate 3-epimerase — —
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS11995 5-formyltetrahydrofolate cyclo-ligase 0.80 ABZR86_RS12200 ribulose-phosphate 3-epimerase low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1511 5,10-methenyltetrahydrofolate synthetase 0.39 Echvi_3575 ribulose-phosphate 3-epimerase low > 79
Cupriavidus basilensis FW507-4G11 0.14 RR42_RS01400 5-formyltetrahydrofolate cyclo-ligase 0.73 RR42_RS18285 ribulose-phosphate 3-epimerase — —
Phaeobacter inhibens DSM 17395 0.13 PGA1_c21820 5-formyltetrahydrofolate cycloligase-like protein 0.41 PGA1_c04170 ribulose-phosphate 3-epimerase Rpe — —

Not shown: 0 genomes with orthologs for ECD_02743 only; 33 genomes with orthologs for ECD_03238 only