| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_02897 | | quorum sensing DNA-binding response regulator in two-component regulatory system with QseC | 1.0 | ECD_02629 | | (p)ppGpp synthetase I/GTP pyrophosphokinase | low | > 61 |
| Escherichia fergusonii Becca | 1.00 | EFB2_00788 | | Transcriptional regulatory protein QseB | 1.00 | EFB2_01133 | | GTP pyrophosphokinase | low | > 86 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_17740 | | Quorum sensing DNA-binding response regulator in two-component regulatory system with QseC | 1.00 | HEPCGN_19500 | relA | GTP diphosphokinase | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00677 | | Transcriptional regulatory protein QseB | 1.00 | OHPLBJKB_00947 | | GTP pyrophosphokinase | low | > 73 |
| Escherichia coli ECOR27 | 0.99 | NOLOHH_10660 | | Transcriptional regulatory protein QseB | 1.00 | NOLOHH_12125 | relA | GTP diphosphokinase | low | > 75 |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_22515 | | Transcriptional regulatory protein QseB | 1.00 | JDDGAC_23915 | relA | GTP diphosphokinase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS17425 | | quorum sensing response regulator transcription factor QseB | 1.00 | ECOLIN_RS15515 | | GTP diphosphokinase | low | > 55 |
| Escherichia coli ECRC100 | 0.99 | OKFHMN_18880 | | Transcriptional regulatory protein QseB | 1.00 | OKFHMN_20250 | relA | GTP diphosphokinase | low | > 80 |
| Escherichia coli ECRC62 | 0.99 | BNILDI_00855 | | Transcriptional regulatory protein QseB | 1.00 | BNILDI_10630 | relA | GTP diphosphokinase | low | > 75 |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_16645 | | Transcriptional regulatory protein QseB | 1.00 | NIAGMN_18020 | relA | GTP diphosphokinase | — | — |
| Escherichia coli BW25113 | 0.99 | b3025 | qseB | DNA-binding response regulator in two-component regulatory system with QseC (NCBI) | 1.00 | b2784 | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.99 | MCAODC_09395 | | Transcriptional regulatory protein QseB | 1.00 | MCAODC_10775 | relA | GTP diphosphokinase | low | > 87 |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_09265 | | Transcriptional regulatory protein QseB | 1.00 | KEDOAH_07880 | relA | GTP diphosphokinase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.89 | GFF3138 | | Two-component system response regulator QseB | 0.96 | GFF4837 | | 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 | low | > 78 |
| Klebsiella michiganensis M5al | 0.85 | BWI76_RS24335 | | two-component system response regulator QseB | 0.94 | BWI76_RS22805 | | GTP diphosphokinase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.83 | EX28DRAFT_3057 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | 0.94 | EX28DRAFT_2864 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.83 | MPMX20_03863 | | Transcriptional regulatory protein QseB | 0.93 | MPMX20_03653 | | GTP pyrophosphokinase | low | > 85 |
| Rahnella sp. WP5 | 0.70 | EX31_RS03275 | | response regulator | 0.85 | EX31_RS07955 | | GTP diphosphokinase | low | > 89 |
| Pantoea sp. MT58 | 0.70 | IAI47_00340 | | response regulator | 0.84 | IAI47_04120 | | GTP diphosphokinase | low | > 76 |
| Dickeya dianthicola 67-19 | 0.69 | HGI48_RS21345 | | response regulator | 0.87 | HGI48_RS17070 | | GTP diphosphokinase | low | > 71 |
| Dickeya dianthicola ME23 | 0.68 | DZA65_RS22325 | | response regulator | 0.87 | DZA65_RS18145 | | GTP diphosphokinase | low | > 75 |
| Serratia liquefaciens MT49 | 0.68 | IAI46_21235 | | response regulator | 0.85 | IAI46_03600 | | GTP diphosphokinase | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS21560 | | response regulator | 0.86 | HER17_RS04115 | | GTP diphosphokinase | low | > 75 |
| Paraburkholderia graminis OAS925 | 0.52 | ABIE53_003418 | | two-component system response regulator QseB | 0.34 | ABIE53_002905 | | GTP pyrophosphokinase | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.52 | BPHYT_RS16220 | | transcriptional regulator | 0.35 | BPHYT_RS13655 | | GTP pyrophosphokinase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.52 | H281DRAFT_04180 | | two component transcriptional regulator, winged helix family | 0.34 | H281DRAFT_04499 | | GTP pyrophosphokinase | low | > 103 |
| Dechlorosoma suillum PS | 0.51 | Dsui_3448 | | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain | 0.37 | Dsui_2816 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 51 |
| Pseudomonas simiae WCS417 | 0.51 | PS417_13595 | | XRE family transcriptional regulator | 0.47 | PS417_20150 | | (p)ppGpp synthetase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.50 | QEN71_RS02475 | | response regulator | 0.36 | QEN71_RS05265 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 153 |
| Pseudomonas sp. RS175 | 0.50 | PFR28_02328 | | Transcriptional regulatory protein QseB | 0.47 | PFR28_03223 | | GTP pyrophosphokinase | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.50 | PfGW456L13_3169 | | Two-component system response regulator QseB | 0.47 | PfGW456L13_2035 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.50 | PFLU_RS15245 | | response regulator | 0.47 | PFLU_RS22095 | | GTP diphosphokinase | low | > 109 |
| Pseudomonas sp. S08-1 | 0.50 | OH686_04665 | | Two-component system response regulator QseB | 0.47 | OH686_18960 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase , (p)ppGpp synthetase I | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.50 | AO356_23845 | | XRE family transcriptional regulator | 0.47 | AO356_19060 | | (p)ppGpp synthetase | low | > 104 |
| Pseudomonas fluorescens SBW25 | 0.50 | PFLU_RS15245 | | response regulator | 0.47 | PFLU_RS22095 | | GTP diphosphokinase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.49 | Pf6N2E2_1539 | | Two-component system response regulator QseB | 0.47 | Pf6N2E2_5723 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.49 | HSERO_RS21985 | | transcriptional regulator | 0.36 | HSERO_RS09855 | | GTP pyrophosphokinase | low | > 78 |
| Pseudomonas fluorescens FW300-N1B4 | 0.49 | Pf1N1B4_4454 | | Two-component system response regulator QseB | 0.47 | Pf1N1B4_3508 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.48 | RR42_RS30345 | | XRE family transcriptional regulator | 0.35 | RR42_RS06585 | | GTP pyrophosphokinase | low | > 128 |
| Ralstonia sp. UNC404CL21Col | 0.47 | ABZR87_RS22890 | | response regulator transcription factor | 0.36 | ABZR87_RS13745 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 80 |
| Pseudomonas putida KT2440 | 0.47 | PP_4225 | | two component system DNA-binding transcriptional activator QseB | 0.46 | PP_1656 | | ATP:GTP 3'-pyrophosphotransferase | 0.15 | 49 |
| Variovorax sp. SCN45 | 0.47 | GFF1175 | | Two-component system response regulator QseB | 0.32 | GFF403 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | low | > 127 |
| Ralstonia solanacearum GMI1000 | 0.47 | RS_RS24590 | | DNA-binding response regulator | 0.36 | RS_RS07930 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.46 | Psest_1602 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | 0.46 | Psest_1640 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 67 |
| Ralstonia solanacearum PSI07 | 0.46 | RPSI07_RS07290 | | DNA-binding response regulator | 0.36 | RPSI07_RS15685 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 81 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_19370 | | transcriptional regulator | 0.47 | AO353_02710 | | (p)ppGpp synthetase | low | > 101 |
| Ralstonia solanacearum UW163 | 0.46 | UW163_RS17155 | | DNA-binding response regulator | 0.35 | UW163_RS15115 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.46 | RALBFv3_RS16415 | | DNA-binding response regulator | 0.35 | RALBFv3_RS01805 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 76 |
| Acidovorax sp. GW101-3H11 | 0.45 | Ac3H11_3946 | | Two-component system response regulator QseB | 0.33 | Ac3H11_362 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | low | > 79 |
| Acinetobacter radioresistens SK82 | 0.44 | MPMX26_02034 | | Transcriptional regulatory protein QseB | 0.36 | MPMX26_00539 | | GTP pyrophosphokinase | — | — |
| Rhodanobacter denitrificans MT42 | 0.43 | LRK55_RS13865 | | response regulator transcription factor | 0.39 | LRK55_RS12430 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.43 | LRK54_RS14145 | | response regulator transcription factor | 0.39 | LRK54_RS12725 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.43 | ABZR86_RS20365 | | response regulator transcription factor | 0.40 | ABZR86_RS19725 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 74 |
| Shewanella oneidensis MR-1 | 0.42 | SO2104 | | DNA-binding response regulator YgiX, putative (NCBI ptt file) | 0.58 | SO3455 | relA | GTP pyrophosphokinase (NCBI ptt file) | 0.21 | 33 |
| Rhodanobacter sp. FW510-T8 | 0.42 | OKGIIK_14050 | ompR | DNA-binding response regulator | 0.39 | OKGIIK_02170 | relA | GTP diphosphokinase | low | > 52 |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS04465 | | response regulator transcription factor | 0.33 | ABCV34_RS08440 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 48 |
| Marinobacter adhaerens HP15 | 0.42 | HP15_3968 | | two component transcriptional regulator, winged helix family | 0.45 | HP15_791 | | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA | low | > 73 |
| Shewanella sp. ANA-3 | 0.42 | Shewana3_1885 | | two component transcriptional regulator (RefSeq) | 0.59 | Shewana3_1111 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | low | > 73 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.42 | Psyr_3212 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | 0.47 | Psyr_3695 | | RelA/SpoT protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.42 | Psyr_3212 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | 0.47 | Psyr_3695 | | RelA/SpoT protein | low | > 86 |
| Vibrio cholerae E7946 ATCC 55056 | 0.41 | CSW01_19595 | | DNA-binding response regulator | 0.67 | CSW01_12405 | | GTP diphosphokinase | low | > 62 |
| Lysobacter sp. OAE881 | 0.40 | ABIE51_RS00875 | | response regulator transcription factor | 0.34 | ABIE51_RS05170 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.37 | Xcc-8004.4942.1 | | Two-component system regulatory protein | 0.36 | Xcc-8004.1489.1 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | low | > 74 |
| Bacteroides stercoris CC31F | 0.33 | HMPREF1181_RS11775 | | response regulator transcription factor | 0.23 | HMPREF1181_RS16240 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 56 |