Conservation of cofitness between ECD_02087 and ECD_02409 in Escherichia coli BL21

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02087 UPF0324 family inner membrane protein 1.0 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC102 1.00 NIAGMN_21255 yeiH UPF0324 membrane protein YeiH 1.00 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01553 hypothetical protein 1.00 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN low > 73
Escherichia coli ECRC101 1.00 MCAODC_14540 yeiH UPF0324 membrane protein YeiH 1.00 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 87
Escherichia coli ECRC98 1.00 JDDGAC_27450 yeiH UPF0324 membrane protein YeiH 1.00 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 86
Escherichia coli ECOR38 1.00 HEPCGN_22755 yeiH UPF0324 membrane protein YeiH 1.00 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 87
Escherichia coli ECRC100 1.00 OKFHMN_23490 yeiH UPF0324 membrane protein YeiH 1.00 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 80
Escherichia coli ECRC62 1.00 BNILDI_13985 yeiH UPF0324 membrane protein YeiH 1.00 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Escherichia coli ECRC99 1.00 KEDOAH_04695 yeiH UPF0324 membrane protein YeiH 1.00 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN — —
Escherichia coli BW25113 1.00 b2158 yeiH conserved inner membrane protein (NCBI) 1.00 b2517 yfgB predicted enzyme (NCBI) low > 76
Escherichia coli ECOR27 1.00 NOLOHH_15065 yeiH UPF0324 membrane protein YeiH 1.00 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Escherichia coli Nissle 1917 1.00 ECOLIN_RS12635 YeiH family protein 1.00 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.54 14
Escherichia fergusonii Becca 1.00 EFB2_01698 hypothetical protein 1.00 EFB2_01373 Dual-specificity RNA methyltransferase RlmN low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF3775 Putative membrane protein YeiH 0.96 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 78
Enterobacter sp. TBS_079 0.86 MPMX20_03129 hypothetical protein 0.94 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN low > 85
Enterobacter asburiae PDN3 0.85 EX28DRAFT_0398 conserved hypothetical integral membrane protein 0.94 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 76
Klebsiella michiganensis M5al 0.83 BWI76_RS19695 membrane protein 0.94 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 92
Serratia liquefaciens MT49 0.61 IAI46_17220 YeiH family putative sulfate export transporter 0.88 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.35 76
Rahnella sp. WP5 0.59 EX31_RS19055 YeiH family putative sulfate export transporter 0.86 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 89
Pantoea sp. MT58 0.53 IAI47_06670 YeiH family putative sulfate export transporter 0.87 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 76
Dickeya dadantii 3937 0.51 DDA3937_RS09255 YeiH family putative sulfate export transporter 0.89 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.41 31
Erwinia tracheiphila SCR3 0.50 LU632_RS17300 YeiH family putative sulfate export transporter 0.88 LU632_RS17815 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 74
Dickeya dianthicola ME23 0.50 DZA65_RS09585 YeiH family putative sulfate export transporter 0.88 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Dickeya dianthicola 67-19 0.49 HGI48_RS09280 YeiH family putative sulfate export transporter 0.88 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 71
Pectobacterium carotovorum WPP14 0.48 HER17_RS12845 YeiH family protein 0.89 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS21580 membrane protein 0.50 HSERO_RS14810 50S rRNA methyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF332 Putative membrane protein YeiH 0.47 GFF4866 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 90
Variovorax sp. SCN45 0.42 GFF1741 UPF0324 inner membrane protein YeiH 0.48 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) low > 127
Parabacteroides merdae CL09T00C40 0.39 HMPREF1078_RS00725 YeiH family protein 0.28 HMPREF1078_RS14530 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 61
Bacteroides thetaiotaomicron VPI-5482 0.37 BT1919 conserved hypothetical protein with a conserved domain (NCBI ptt file) 0.31 BT4372 conserved hypothetical protein (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS15060 YeiH family putative sulfate export transporter 0.29 ABI39_RS12945 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 72
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS07240 YeiH family protein 0.51 QEN71_RS05965 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 153
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_05208 conserved hypothetical integral membrane protein 0.51 H281DRAFT_00514 23S rRNA m(2)A-2503 methyltransferase — —
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS11315 membrane protein 0.51 BPHYT_RS12590 dual-specificity RNA methyltransferase RlmN — —
Dechlorosoma suillum PS 0.31 Dsui_2230 conserved hypothetical integral membrane protein 0.52 Dsui_3145 23S rRNA m2A2503 methyltransferase — —
Paraburkholderia graminis OAS925 0.31 ABIE53_002342 putative integral membrane protein (TIGR00698 family) 0.50 ABIE53_002744 23S rRNA (adenine2503-C2)-methyltransferase low > 113
Pseudomonas putida KT2440 0.31 PP_3661 conserved membrane protein of unknown function, UPF0324 family 0.55 PP_0850 Dual-specificity RNA methyltransferase RlmN low > 96
Ralstonia solanacearum GMI1000 0.30 RS_RS05520 YeiH family putative sulfate export transporter 0.50 RS_RS06070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 80
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS10370 YeiH family protein 0.50 ABZR87_RS10900 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 80
Ralstonia solanacearum PSI07 0.29 RPSI07_RS18650 YeiH family putative sulfate export transporter 0.51 RPSI07_RS18115 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 81
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS13960 hypothetical protein 0.52 RR42_RS13155 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Ralstonia solanacearum UW163 0.28 UW163_RS12180 YeiH family putative sulfate export transporter 0.50 UW163_RS12725 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS14710 YeiH family putative sulfate export transporter 0.50 RALBFv3_RS15260 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Rhodopseudomonas palustris CGA009 0.24 TX73_009105 YeiH family protein 0.40 TX73_002060 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 86
Rhodanobacter denitrificans FW104-10B01 0.20 LRK54_RS12830 YeiH family protein 0.53 LRK54_RS00070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 59
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_02225 Conserved hypothetical integral membrane protein 0.53 OKGIIK_07140 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 52
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS19775 YeiH family protein 0.52 ABZR86_RS05455 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 74
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_4898 Inner membrane protein 0.56 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 87
Bosea sp. OAE506 0.19 ABIE41_RS17170 putative sulfate exporter family transporter 0.37 ABIE41_RS04880 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 77
Pseudomonas fluorescens FW300-N1B4 0.19 Pf1N1B4_5992 Inner membrane protein 0.56 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) — —
Rhodospirillum rubrum S1H 0.18 Rru_A0605 hypothetical protein (NCBI) 0.42 Rru_A3329 hypothetical protein (NCBI) low > 58
Pseudomonas fluorescens FW300-N2E3 0.18 AO353_21030 hypothetical protein 0.56 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase low > 101
Rhodanobacter denitrificans MT42 0.18 LRK55_RS12530 putative sulfate exporter family transporter 0.53 LRK55_RS18065 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 63
Alteromonas macleodii MIT1002 0.18 MIT1002_03827 hypothetical protein 0.73 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN low > 70
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS04995 putative sulfate exporter family transporter 0.29 HMPREF1058_RS17025 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 67
Fusobacterium nucleatum SB010 0.17 HUW76_07425 YeiH family putative sulfate export transporter 0.30 HUW76_07445 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 35
Sinorhizobium meliloti 1021 0.17 SMa1737 hypothetical protein 0.37 SMc03831 hypothetical protein low > 103
Dinoroseobacter shibae DFL-12 0.16 Dshi_1827 hypothetical protein (RefSeq) 0.40 Dshi_3311 radical SAM enzyme, Cfr family (RefSeq) low > 64
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_01750 hypothetical protein 0.34 CA264_15910 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS12585 YeiH family protein 0.32 ABZR88_RS00655 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 71
Azospirillum brasilense Sp245 0.15 AZOBR_RS32555 membrane protein 0.41 AZOBR_RS00800 50S rRNA methyltransferase low > 97
Bifidobacterium breve UCC2003 0.15 BBR_RS13515 putative sulfate exporter family transporter 0.27 BBR_RS16105 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 34
Shewanella oneidensis MR-1 0.14 SO4708 conserved hypothetical protein (NCBI ptt file) 0.75 SO3315 conserved hypothetical protein TIGR00048 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.14 Shewana3_4061 hypothetical protein (RefSeq) 0.75 Shewana3_1226 hypothetical protein (RefSeq) low > 73
Desulfovibrio vulgaris Miyazaki F 0.14 DvMF_1255 hypothetical protein (RefSeq) 0.35 DvMF_1431 radical SAM enzyme, Cfr family (RefSeq) low > 51
Shewanella loihica PV-4 0.14 Shew_3668 hypothetical protein (RefSeq) 0.73 Shew_1287 hypothetical protein (RefSeq) low > 60
Azospirillum sp. SherDot2 0.13 MPMX19_02876 hypothetical protein 0.40 MPMX19_02413 Dual-specificity RNA methyltransferase RlmN low > 112

Not shown: 0 genomes with orthologs for ECD_02087 only; 34 genomes with orthologs for ECD_02409 only