Conservation of cofitness between Dsui_2385 and Dsui_2149 in Dechlorosoma suillum PS

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dechlorosoma suillum PS 1.0 Dsui_2385 transcription-repair coupling factor Mfd 1.0 Dsui_2149 DNA helicase, Rad3 0.70 16
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS07845 transcription-repair coupling factor 0.58 RR42_RS07580 helicase 0.46 7
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS13240 transcription-repair coupling factor 0.56 ABZR87_RS13325 ATP-dependent DNA helicase low > 80
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS15180 transcription-repair coupling factor 0.58 HSERO_RS14855 helicase low > 78
Paraburkholderia graminis OAS925 0.64 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) 0.55 ABIE53_002724 ATP-dependent DNA helicase DinG low > 113
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_00880 transcription-repair coupling factor 0.56 H281DRAFT_00533 ATP-dependent DNA helicase DinG low > 103
Ralstonia solanacearum UW163 0.63 UW163_RS14755 transcription-repair coupling factor 0.56 UW163_RS14840 ATP-dependent DNA helicase — —
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS01445 transcription-repair coupling factor 0.56 RALBFv3_RS01530 ATP-dependent DNA helicase low > 76
Ralstonia solanacearum GMI1000 0.63 RS_RS08275 transcription-repair coupling factor 0.56 RS_RS08195 ATP-dependent DNA helicase low > 80
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS09290 helicase 0.56 BPHYT_RS12495 helicase low > 109
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS22060 transcription-repair coupling factor 0.55 QEN71_RS06060 ATP-dependent DNA helicase low > 153
Ralstonia solanacearum PSI07 0.63 RPSI07_RS16040 transcription-repair coupling factor 0.56 RPSI07_RS15960 ATP-dependent DNA helicase — —
Variovorax sp. OAS795 0.60 ABID97_RS17285 transcription-repair coupling factor 0.36 ABID97_RS14180 ATP-dependent DNA helicase low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF4934 Transcription-repair coupling factor 0.32 GFF4872 DinG family ATP-dependent helicase YoaA low > 90
Acidovorax sp. GW101-3H11 0.59 Ac3H11_328 Transcription-repair coupling factor 0.36 Ac3H11_2460 DinG family ATP-dependent helicase YoaA low > 79
Variovorax sp. SCN45 0.59 GFF412 Transcription-repair coupling factor 0.36 GFF986 DinG family ATP-dependent helicase YoaA low > 127
Castellaniella sp019104865 MT123 0.55 ABCV34_RS08660 transcription-repair coupling factor 0.46 ABCV34_RS01875 ATP-dependent DNA helicase low > 48
Pseudomonas stutzeri RCH2 0.48 Psest_1653 transcription-repair coupling factor (mfd) 0.15 Psest_2857 Rad3-related DNA helicases 0.38 12
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_2278 Transcription-repair coupling factor 0.15 Pf6N2E2_2942 ATP-dependent helicase DinG/Rad3 low > 103
Pseudomonas sp. S08-1 0.48 OH686_21990 transcription-repair coupling factor 0.16 OH686_04830 ATP-dependent helicase DinG/Rad3 low > 80
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_02270 transcription-repair coupling factor 0.15 AO356_05425 ATP-dependent DNA helicase DinG 0.36 85
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_00435 transcription-repair coupling factor 0.15 AO353_17020 ATP-dependent DNA helicase DinG 0.37 66
Pseudomonas sp. RS175 0.47 PFR28_01123 Transcription-repair-coupling factor 0.15 PFR28_00520 ATP-dependent DNA helicase DinG low > 88
Pseudomonas simiae WCS417 0.47 PS417_07635 transcription-repair coupling factor 0.15 PS417_06510 ATP-dependent DNA helicase DinG low > 88
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_4027 Transcription-repair coupling factor 0.15 PfGW456L13_4624 ATP-dependent helicase DinG/Rad3 low > 87
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_3916 Transcription-repair coupling factor 0.15 Pf1N1B4_3194 ATP-dependent helicase DinG/Rad3 — —
Pseudomonas fluorescens SBW25 0.47 PFLU_RS07710 transcription-repair coupling factor 0.15 PFLU_RS06540 ATP-dependent DNA helicase DinG low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS07710 transcription-repair coupling factor 0.15 PFLU_RS06540 ATP-dependent DNA helicase DinG low > 109
Alteromonas macleodii MIT1002 0.46 MIT1002_01646 Transcription-repair-coupling factor 0.39 MIT1002_02593 putative ATP-dependent helicase DinG low > 70
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS02040 transcription-repair coupling factor 0.42 LRK54_RS12765 ATP-dependent DNA helicase low > 59
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_1800 transcription-repair coupling factor 0.42 B158DRAFT_2492 Rad3-related DNA helicases low > 40
Rhodanobacter denitrificans MT42 0.46 LRK55_RS01815 transcription-repair coupling factor 0.42 LRK55_RS12465 ATP-dependent DNA helicase low > 63
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS21210 transcription-repair coupling factor 0.42 ABZR86_RS19750 ATP-dependent DNA helicase 0.30 55
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_09445 transcription-repair coupling factor 0.40 CSW01_09930 ATP-dependent DNA helicase low > 62
Shewanella sp. ANA-3 0.44 Shewana3_2289 transcription-repair coupling factor (RefSeq) 0.33 Shewana3_1859 helicase c2 (RefSeq) low > 73
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_09105 mfd transcription-repair coupling factor 0.42 OKGIIK_02195 dinG helicase low > 52
Shewanella oneidensis MR-1 0.44 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) 0.34 SO2081 ATP-dependent helicase, DinG family (NCBI ptt file) low > 76
Pantoea sp. MT58 0.44 IAI47_11975 transcription-repair coupling factor 0.40 IAI47_08820 ATP-dependent DNA helicase low > 76
Escherichia coli ECOR38 0.44 HEPCGN_24015 mfd transcription-repair coupling factor 0.41 HEPCGN_04970 yoaA putative ATP-dependent DNA helicase YoaA low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_02552 Transcription-repair-coupling factor 0.41 OHPLBJKB_01925 putative ATP-dependent helicase DinG low > 73
Escherichia coli ECRC102 0.44 NIAGMN_24360 mfd transcription-repair coupling factor 0.41 NIAGMN_01485 yoaA putative ATP-dependent DNA helicase YoaA — —
Escherichia coli ECRC62 0.44 BNILDI_19160 mfd transcription-repair coupling factor 0.41 BNILDI_15885 yoaA putative ATP-dependent DNA helicase YoaA — —
Escherichia coli ECRC99 0.44 KEDOAH_24285 mfd transcription-repair coupling factor 0.41 KEDOAH_01530 yoaA putative ATP-dependent DNA helicase YoaA — —
Escherichia coli ECRC101 0.44 OKFHMN_03470 mfd transcription-repair coupling factor 0.41 OKFHMN_26580 yoaA putative ATP-dependent DNA helicase YoaA — —
Escherichia coli ECRC98 0.44 JDDGAC_07130 mfd transcription-repair coupling factor 0.41 JDDGAC_01155 yoaA putative ATP-dependent DNA helicase YoaA — —
Escherichia coli BW25113 0.44 b1114 mfd transcription-repair coupling factor (NCBI) 0.40 b1808 yoaA conserved protein with nucleoside triphosphate hydrolase domain (NCBI) low > 76
Escherichia fergusonii Becca 0.44 EFB2_02861 Transcription-repair-coupling factor 0.41 EFB2_02192 putative ATP-dependent DNA helicase YoaA low > 86
Escherichia coli ECOR27 0.44 NOLOHH_20995 mfd transcription-repair coupling factor 0.41 NOLOHH_17100 yoaA putative ATP-dependent DNA helicase YoaA low > 57
Escherichia coli ECRC101 0.44 MCAODC_22830 mfd transcription-repair coupling factor 0.41 MCAODC_18830 yoaA putative ATP-dependent DNA helicase YoaA — —
Escherichia coli BL21 0.44 ECD_01110 transcription-repair coupling factor 0.41 ECD_01778 putative ATP-dependent helicase, DinG family — —
Pectobacterium carotovorum WPP14 0.43 HER17_RS08775 transcription-repair coupling factor 0.40 HER17_RS11290 ATP-dependent DNA helicase low > 75
Shewanella amazonensis SB2B 0.43 Sama_1330 transcription-repair coupling factor (RefSeq) 0.34 Sama_1940 ATP-dependent helicase DinG (RefSeq) 0.59 4
Enterobacter asburiae PDN3 0.43 EX28DRAFT_1816 transcription-repair coupling factor (mfd) 0.40 EX28DRAFT_0750 Rad3-related DNA helicases low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF3397 Transcription-repair coupling factor 0.40 GFF2823 DinG family ATP-dependent helicase YoaA low > 78
Shewanella loihica PV-4 0.43 Shew_1630 transcription-repair coupling factor (RefSeq) 0.34 Shew_2196 helicase c2 (RefSeq) 0.62 5
Erwinia tracheiphila SCR3 0.43 LU632_RS14730 mfd transcription-repair coupling factor 0.39 LU632_RS13150 ATP-dependent DNA helicase low > 74
Klebsiella michiganensis M5al 0.43 BWI76_RS11205 transcription-repair coupling factor 0.40 BWI76_RS17815 ATP-dependent helicase low > 92
Enterobacter sp. TBS_079 0.43 MPMX20_01795 Transcription-repair-coupling factor 0.40 MPMX20_02714 putative ATP-dependent DNA helicase YoaA low > 85
Lysobacter sp. OAE881 0.43 ABIE51_RS14320 transcription-repair coupling factor 0.36 ABIE51_RS05195 ATP-dependent DNA helicase low > 62
Dickeya dadantii 3937 0.43 DDA3937_RS13000 transcription-repair coupling factor 0.40 DDA3937_RS11240 ATP-dependent DNA helicase low > 74
Dickeya dianthicola 67-19 0.43 HGI48_RS13065 transcription-repair coupling factor 0.40 HGI48_RS11275 ATP-dependent DNA helicase low > 71
Dickeya dianthicola ME23 0.43 DZA65_RS13530 transcription-repair coupling factor 0.40 DZA65_RS11620 ATP-dependent DNA helicase low > 75
Rahnella sp. WP5 0.42 EX31_RS24520 transcription-repair coupling factor 0.39 EX31_RS10615 ATP-dependent DNA helicase low > 89
Serratia liquefaciens MT49 0.42 IAI46_10320 transcription-repair coupling factor 0.39 IAI46_14550 ATP-dependent DNA helicase low > 86
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1775.1 Transcription-repair coupling factor 0.37 Xcc-8004.1496.1 DinG family ATP-dependent helicase YoaA low > 74
Mycobacterium tuberculosis H37Rv 0.24 Rv1020 Probable transcription-repair coupling factor Mfd (TRCF) 0.18 Rv1329c Probable ATP-dependent helicase DinG low > 58

Not shown: 30 genomes with orthologs for Dsui_2385 only; 3 genomes with orthologs for Dsui_2149 only