| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dechlorosoma suillum PS | 1.0 | Dsui_1234 | | putative Zn-dependent protease-like protein | 1.0 | Dsui_2149 | | DNA helicase, Rad3 | 0.74 | 14 |
| Ralstonia solanacearum IBSBF1503 | 0.56 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.56 | RALBFv3_RS01530 | | ATP-dependent DNA helicase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.56 | UW163_RS15845 | | metalloprotease PmbA | 0.56 | UW163_RS14840 | | ATP-dependent DNA helicase | — | — |
| Paraburkholderia graminis OAS925 | 0.56 | ABIE53_003116 | | PmbA protein | 0.55 | ABIE53_002724 | | ATP-dependent DNA helicase DinG | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.56 | H281DRAFT_00533 | | ATP-dependent DNA helicase DinG | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.56 | QEN71_RS04270 | | metalloprotease PmbA | 0.55 | QEN71_RS06060 | | ATP-dependent DNA helicase | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.55 | ABZR87_RS09660 | | metalloprotease PmbA | 0.56 | ABZR87_RS13325 | | ATP-dependent DNA helicase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.55 | RPSI07_RS19505 | | metalloprotease PmbA | 0.56 | RPSI07_RS15960 | | ATP-dependent DNA helicase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS09265 | | peptidase C69 | 0.58 | HSERO_RS14855 | | helicase | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.55 | BPHYT_RS14705 | | peptidase C69 | 0.56 | BPHYT_RS12495 | | helicase | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS14750 | | peptidase PMbA | 0.58 | RR42_RS07580 | | helicase | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS04700 | | metalloprotease PmbA | 0.56 | RS_RS08195 | | ATP-dependent DNA helicase | low | > 80 |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.36 | Ac3H11_2460 | | DinG family ATP-dependent helicase YoaA | low | > 79 |
| Variovorax sp. OAS795 | 0.50 | ABID97_RS20695 | | metalloprotease PmbA | 0.36 | ABID97_RS14180 | | ATP-dependent DNA helicase | low | > 91 |
| Castellaniella sp019104865 MT123 | 0.50 | ABCV34_RS10610 | | metalloprotease PmbA | 0.46 | ABCV34_RS01875 | | ATP-dependent DNA helicase | low | > 48 |
| Variovorax sp. SCN45 | 0.50 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.36 | GFF986 | | DinG family ATP-dependent helicase YoaA | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.32 | GFF4872 | | DinG family ATP-dependent helicase YoaA | low | > 90 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.15 | Pf6N2E2_2942 | | ATP-dependent helicase DinG/Rad3 | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_07085 | | peptidase PmbA | 0.15 | AO356_05425 | | ATP-dependent DNA helicase DinG | low | > 104 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_00163 | | Metalloprotease PmbA | 0.15 | PFR28_00520 | | ATP-dependent DNA helicase DinG | low | > 88 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_04295 | | peptidase PmbA | 0.15 | PS417_06510 | | ATP-dependent DNA helicase DinG | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS04350 | | metalloprotease PmbA | 0.15 | PFLU_RS06540 | | ATP-dependent DNA helicase DinG | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS04350 | | metalloprotease PmbA | 0.15 | PFLU_RS06540 | | ATP-dependent DNA helicase DinG | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.15 | Pf1N1B4_3194 | | ATP-dependent helicase DinG/Rad3 | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.15 | PfGW456L13_4624 | | ATP-dependent helicase DinG/Rad3 | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_05205 | | peptidase PmbA | 0.15 | AO353_17020 | | ATP-dependent DNA helicase DinG | 0.33 | 43 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21700 | | metalloprotease PmbA | 0.42 | ABZR86_RS19750 | | ATP-dependent DNA helicase | low | > 74 |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.15 | Psest_2857 | | Rad3-related DNA helicases | low | > 67 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.16 | OH686_04830 | | ATP-dependent helicase DinG/Rad3 | low | > 80 |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.42 | OKGIIK_02195 | dinG | helicase | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | 0.42 | LRK54_RS12765 | | ATP-dependent DNA helicase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS03125 | | metalloprotease PmbA | 0.42 | LRK55_RS12465 | | ATP-dependent DNA helicase | low | > 63 |
| Shewanella amazonensis SB2B | 0.44 | Sama_0482 | | PmbA protein (RefSeq) | 0.34 | Sama_1940 | | ATP-dependent helicase DinG (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.43 | CSW01_12845 | | metalloprotease PmbA | 0.40 | CSW01_09930 | | ATP-dependent DNA helicase | low | > 62 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_22575 | | metalloprotease PmbA | 0.39 | IAI46_14550 | | ATP-dependent DNA helicase | low | > 86 |
| Escherichia coli BL21 | 0.43 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 0.41 | ECD_01778 | | putative ATP-dependent helicase, DinG family | — | — |
| Rahnella sp. WP5 | 0.43 | EX31_RS12320 | | metalloprotease PmbA | 0.39 | EX31_RS10615 | | ATP-dependent DNA helicase | low | > 89 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_03800 | | Metalloprotease PmbA | 0.41 | OHPLBJKB_01925 | | putative ATP-dependent helicase DinG | low | > 73 |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 0.41 | KEDOAH_01530 | yoaA | putative ATP-dependent DNA helicase YoaA | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.43 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.40 | GFF2823 | | DinG family ATP-dependent helicase YoaA | low | > 78 |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 0.41 | HEPCGN_04970 | yoaA | putative ATP-dependent DNA helicase YoaA | low | > 85 |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 0.41 | NIAGMN_01485 | yoaA | putative ATP-dependent DNA helicase YoaA | — | — |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 0.41 | JDDGAC_01155 | yoaA | putative ATP-dependent DNA helicase YoaA | — | — |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 0.41 | NOLOHH_17100 | yoaA | putative ATP-dependent DNA helicase YoaA | low | > 57 |
| Escherichia coli ECRC101 | 0.43 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 0.41 | OKFHMN_26580 | yoaA | putative ATP-dependent DNA helicase YoaA | — | — |
| Escherichia coli BW25113 | 0.43 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 0.40 | b1808 | yoaA | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.43 | MCAODC_02430 | pmbA | metalloprotease PmbA | 0.41 | MCAODC_18830 | yoaA | putative ATP-dependent DNA helicase YoaA | — | — |
| Escherichia coli ECRC62 | 0.43 | BNILDI_07325 | pmbA | metalloprotease PmbA | 0.41 | BNILDI_15885 | yoaA | putative ATP-dependent DNA helicase YoaA | — | — |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS20090 | | metalloprotease PmbA | 0.40 | HER17_RS11290 | | ATP-dependent DNA helicase | low | > 75 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 0.37 | Xcc-8004.1496.1 | | DinG family ATP-dependent helicase YoaA | low | > 74 |
| Klebsiella michiganensis M5al | 0.42 | BWI76_RS02850 | | metalloprotease PmbA | 0.40 | BWI76_RS17815 | | ATP-dependent helicase | low | > 92 |
| Escherichia fergusonii Becca | 0.42 | EFB2_04298 | | Metalloprotease PmbA | 0.41 | EFB2_02192 | | putative ATP-dependent DNA helicase YoaA | low | > 86 |
| Alteromonas macleodii MIT1002 | 0.42 | MIT1002_00230 | | peptidase PmbA | 0.39 | MIT1002_02593 | | putative ATP-dependent helicase DinG | low | > 70 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS24570 | | metalloprotease PmbA | 0.41 | ECOLIN_RS10055 | | ATP-dependent DNA helicase | — | — |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_00517 | | Metalloprotease PmbA | 0.40 | MPMX20_02714 | | putative ATP-dependent DNA helicase YoaA | low | > 85 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.40 | EX28DRAFT_0750 | | Rad3-related DNA helicases | low | > 76 |
| Lysobacter sp. OAE881 | 0.41 | ABIE51_RS06805 | | metalloprotease PmbA | 0.36 | ABIE51_RS05195 | | ATP-dependent DNA helicase | low | > 62 |
| Dickeya dadantii 3937 | 0.41 | DDA3937_RS01500 | | metalloprotease PmbA | 0.40 | DDA3937_RS11240 | | ATP-dependent DNA helicase | low | > 74 |
| Shewanella oneidensis MR-1 | 0.41 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.34 | SO2081 | | ATP-dependent helicase, DinG family (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.33 | Shewana3_1859 | | helicase c2 (RefSeq) | low | > 73 |
| Dickeya dianthicola ME23 | 0.41 | DZA65_RS01480 | | metalloprotease PmbA | 0.40 | DZA65_RS11620 | | ATP-dependent DNA helicase | 0.48 | 3 |
| Dickeya dianthicola 67-19 | 0.41 | HGI48_RS01415 | | metalloprotease PmbA | 0.40 | HGI48_RS11275 | | ATP-dependent DNA helicase | low | > 71 |
| Shewanella loihica PV-4 | 0.40 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.34 | Shew_2196 | | helicase c2 (RefSeq) | low | > 60 |
| Pantoea sp. MT58 | 0.40 | IAI47_02765 | | metalloprotease PmbA | 0.40 | IAI47_08820 | | ATP-dependent DNA helicase | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.39 | LU632_RS13150 | | ATP-dependent DNA helicase | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.38 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.42 | B158DRAFT_2492 | | Rad3-related DNA helicases | low | > 40 |
Not shown: 22 genomes with orthologs for Dsui_1234 only; 3 genomes with orthologs for Dsui_2149 only