Conservation of cofitness between CSW01_06735 and CSW01_13285 in Vibrio cholerae E7946 ATCC 55056

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06735 methylisocitrate lyase 1.0 CSW01_13285 ribulose-phosphate 3-epimerase 0.88 4
Marinobacter adhaerens HP15 0.68 HP15_1932 methylisocitrate lyase 2 0.69 HP15_3286 ribulose-phosphate 3-epimerase-like protein — —
Alteromonas macleodii MIT1002 0.67 MIT1002_03129 Methylisocitrate lyase 0.74 MIT1002_00441 Ribulose-phosphate 3-epimerase — —
Shewanella loihica PV-4 0.67 Shew_1820 prpB 2-methylisocitrate lyase (RefSeq) 0.77 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) — —
Pseudomonas aeruginosa PUPa3 0.65 DQ20_RS44335 prpB;go_function=methylisocitrate methylisocitrate lyase 0.70 DQ20_RS36285 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa MRSN321 0.65 DY961_RS08515 prpB;go_function=methylisocitrate methylisocitrate lyase 0.70 DY961_RS23065 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa PA14 0.65 IKLFDK_03445 methylisocitrate lyase 0.70 IKLFDK_22375 ribulose-phosphate 3-epimerase — —
Kangiella aquimarina DSM 16071 0.64 B158DRAFT_1343 methylisocitrate lyase 0.69 B158DRAFT_0267 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. RS175 0.64 PFR28_02928 2-methylisocitrate lyase 0.70 PFR28_04049 Ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_00900 2-methylisocitrate lyase 0.70 AO353_07240 ribulose phosphate epimerase — —
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_20865 2-methylisocitrate lyase 0.70 AO356_14410 ribulose phosphate epimerase — —
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_3819 Methylisocitrate lyase (EC 4.1.3.30) 0.71 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_6061 Methylisocitrate lyase (EC 4.1.3.30) (from data) 0.71 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas sp. DMC3 0.63 GFF5230 2-methylisocitrate lyase 0.69 GFF22 Ribulose-phosphate 3-epimerase — —
Pseudomonas stutzeri RCH2 0.63 Psest_2321 methylisocitrate lyase 0.71 Psest_3652 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. SVBP6 0.63 COO64_RS09900 prpB methylisocitrate lyase 0.71 COO64_RS22440 rpe ribulose-phosphate 3-epimerase low > 93
Pseudomonas simiae WCS417 0.63 PS417_21080 2-methylisocitrate lyase 0.71 PS417_25735 ribulose-phosphate 3-epimerase — —
Pseudomonas putida KT2440 0.63 PP_2334 2-methylisocitrate lyase 0.71 PP_0415 ribulose-5-phosphate 3-epimerase — —
Shewanella sp. ANA-3 0.63 Shewana3_3825 prpB 2-methylisocitrate lyase (RefSeq) 0.78 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) — —
Herbaspirillum seropedicae SmR1 0.63 HSERO_RS15660 2-methylisocitrate lyase 0.67 HSERO_RS19425 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. BP01 0.63 JOY50_RS25750 prpB methylisocitrate lyase 0.71 JOY50_RS18210 rpe ribulose-phosphate 3-epimerase — —
Shewanella oneidensis MR-1 0.63 SO0345 prpB methylisocitrate lyase (NCBI ptt file) 0.78 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS02670 methylisocitrate lyase 0.64 RALBFv3_RS06475 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_4118 Methylisocitrate lyase (EC 4.1.3.30) 0.70 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas orientalis W4I3 0.63 QF045_RS22905 methylisocitrate lyase 0.70 QF045_RS00135 ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum UW163 0.63 UW163_RS11055 methylisocitrate lyase 0.64 UW163_RS07150 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS22690 methylisocitrate lyase 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum PSI07 0.62 RPSI07_RS14645 methylisocitrate lyase 0.64 RPSI07_RS10765 ribulose-phosphate 3-epimerase — —
Pseudomonas lactucae CFBP13502 0.62 GEMAOFIL_04361 2-methylisocitrate lyase 0.71 GEMAOFIL_05267 Ribulose-phosphate 3-epimerase low > 96
Pseudomonas fluorescens SBW25 0.62 PFLU_RS22690 methylisocitrate lyase 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_2085 methylisocitrate lyase 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Methylophilus sp. DMC18 0.62 GFF469 2-methylisocitrate lyase 0.64 GFF2051 Ribulose-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_2085 methylisocitrate lyase 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas segetis P6 0.62 MPMX49_02628 2-methylisocitrate lyase 0.71 MPMX49_00887 Ribulose-phosphate 3-epimerase — —
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS14590 methylisocitrate lyase 0.64 ABZR87_RS02130 ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum GMI1000 0.62 RS_RS10050 methylisocitrate lyase 0.63 RS_RS14420 ribulose-phosphate 3-epimerase — —
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS17555 methylisocitrate lyase 0.66 QEN71_RS27540 ribulose-phosphate 3-epimerase — —
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS11260 Methylisocitrate lyase (EC 4.1.3.30) (from data) 0.68 RR42_RS18285 ribulose-phosphate 3-epimerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_03339 2-methylisocitrate lyase 0.77 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC62 0.62 BNILDI_23190 prpB methylisocitrate lyase 0.77 BNILDI_02600 dam adenine-specific DNA-methyltransferase — —
Escherichia coli BL21 0.62 ECD_00286 2-methylisocitrate lyase 0.77 ECD_03238 D-ribulose-5-phosphate 3-epimerase low > 61
Escherichia coli ECOR27 0.62 NOLOHH_01775 prpB methylisocitrate lyase 0.77 NOLOHH_08920 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECOR38 0.62 HEPCGN_07485 prpB methylisocitrate lyase 0.77 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase low > 88
Escherichia fergusonii Becca 0.62 EFB2_03706 2-methylisocitrate lyase 0.77 EFB2_00442 Ribulose-phosphate 3-epimerase — —
Escherichia coli BW25113 0.62 b0331 prpB 2-methylisocitrate lyase (NCBI) 0.77 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) low > 76
Escherichia coli ECRC98 0.61 JDDGAC_12555 prpB methylisocitrate lyase 0.77 JDDGAC_20760 dam adenine-specific DNA-methyltransferase — —
Escherichia coli Nissle 1917 0.61 ECOLIN_RS02150 methylisocitrate lyase 0.77 ECOLIN_RS19345 ribulose-phosphate 3-epimerase low > 55
Escherichia coli ECRC102 0.61 NIAGMN_06955 prpB methylisocitrate lyase 0.77 NIAGMN_14900 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC101 0.61 MCAODC_28130 prpB methylisocitrate lyase 0.77 MCAODC_07660 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC100 0.61 OKFHMN_08900 prpB methylisocitrate lyase 0.77 OKFHMN_17130 dam adenine-specific DNA-methyltransferase — —
Shewanella amazonensis SB2B 0.61 Sama_3294 prpB 2-methylisocitrate lyase (RefSeq) 0.77 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) — —
Escherichia coli ECRC99 0.61 KEDOAH_19065 prpB methylisocitrate lyase 0.77 KEDOAH_11010 dam adenine-specific DNA-methyltransferase — —
Rhodanobacter sp000427505 FW510-R12 0.60 LRK53_RS09460 methylisocitrate lyase 0.66 LRK53_RS17105 ribulose-phosphate 3-epimerase low > 59
Acinetobacter baumannii LAC-4 0.60 RR41_RS18485 methylisocitrate lyase 0.75 RR41_RS15745 ribulose-phosphate 3-epimerase — —
Acinetobacter radioresistens SK82 0.60 MPMX26_01289 2-methylisocitrate lyase 0.73 MPMX26_02569 Ribulose-phosphate 3-epimerase — —
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_06565 prpB methylisocitrate lyase 0.62 OKGIIK_12435 rpe ribulose-phosphate 3-epimerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4263 Methylisocitrate lyase (EC 4.1.3.30) 0.76 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 78
Rhodanobacter denitrificans MT42 0.58 LRK55_RS00470 methylisocitrate lyase 0.64 LRK55_RS11120 ribulose-phosphate 3-epimerase — —
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS00695 methylisocitrate lyase 0.63 LRK54_RS11390 ribulose-phosphate 3-epimerase — —
Castellaniella sp019104865 MT123 0.58 ABCV34_RS01670 methylisocitrate lyase 0.59 ABCV34_RS10270 ribulose-phosphate 3-epimerase — —
Xanthomonas campestris pv. campestris strain 8004 0.58 Xcc-8004.3981.1 Methylisocitrate lyase (EC 4.1.3.30) 0.64 Xcc-8004.605.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Lysobacter sp. OAE881 0.57 ABIE51_RS06015 methylisocitrate lyase 0.66 ABIE51_RS04135 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. S08-1 0.56 OH686_01690 methylisocitrate lyase 0.70 OH686_15115 ribulose-phosphate 3-epimerase — —
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS08480 methylisocitrate lyase 0.71 ABZR86_RS12200 ribulose-phosphate 3-epimerase 0.39 57
Rhodospirillum rubrum S1H 0.34 Rru_A2320 Ankyrin (NCBI) 0.53 Rru_A2402 Ribulose-phosphate 3-epimerase (NCBI) — —
Rhodopseudomonas palustris CGA009 0.33 TX73_012370 methylisocitrate lyase 0.39 TX73_019755 ribulose-phosphate 3-epimerase — —
Xanthobacter sp. DMC5 0.32 GFF2763 2,3-dimethylmalate lyase 0.57 GFF2441 Ribulose-phosphate 3-epimerase — —
Variovorax sp. OAS795 0.32 ABID97_RS18835 oxaloacetate decarboxylase 0.59 ABID97_RS04905 ribulose-phosphate 3-epimerase — —
Azospirillum sp. SherDot2 0.31 MPMX19_04657 2,3-dimethylmalate lyase 0.56 MPMX19_02946 Ribulose-phosphate 3-epimerase low > 112
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_06209 carboxyvinyl-carboxyphosphonate phosphorylmutase 0.66 H281DRAFT_05717 ribulose-5-phosphate 3-epimerase low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF3032 Methylisocitrate lyase (EC 4.1.3.30) 0.60 GFF2197 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Dinoroseobacter shibae DFL-12 0.29 Dshi_0689 isocitrate lyase family protein (RefSeq) 0.41 Dshi_3006 Ribulose-phosphate 3-epimerase (RefSeq) — —
Azospirillum brasilense Sp245 0.27 AZOBR_RS27785 carboxyvinyl-carboxyphosphonate phosphorylmutase 0.45 AZOBR_RS06755 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola 67-19 0.14 HGI48_RS06990 phosphoenolpyruvate mutase 0.76 HGI48_RS19660 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola ME23 0.14 DZA65_RS07470 phosphoenolpyruvate mutase 0.76 DZA65_RS20745 ribulose-phosphate 3-epimerase — —

Not shown: 1 genomes with orthologs for CSW01_06735 only; 48 genomes with orthologs for CSW01_13285 only