Conservation of cofitness between CSW01_06950 and CSW01_02460 in Vibrio cholerae E7946 ATCC 55056

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06950 ATP-dependent RNA helicase HrpA 1.0 CSW01_02460 type IV pili twitching motility protein PilT 0.68 14
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2632 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.45 GFF3053 Twitching motility protein PilT low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_02301 hypothetical protein 0.44 OHPLBJKB_00766 putative protein YggR low > 74
Escherichia coli ECRC101 0.71 MCAODC_16205 hrpA ATP-dependent RNA helicase HrpA 0.45 MCAODC_09780 yggR Uncharacterized protein YggR low > 88
Escherichia coli ECRC102 0.71 NIAGMN_25865 hrpA ATP-dependent RNA helicase HrpA 0.45 NIAGMN_17025 yggR Uncharacterized protein YggR low > 80
Enterobacter sp. TBS_079 0.71 MPMX20_02189 hypothetical protein 0.47 MPMX20_03808 putative protein YggR low > 85
Escherichia coli ECRC98 0.71 JDDGAC_04220 hrpA ATP-dependent RNA helicase HrpA 0.45 JDDGAC_22890 yggR Uncharacterized protein YggR low > 87
Escherichia coli ECRC100 0.71 OKFHMN_01730 hrpA ATP-dependent RNA helicase HrpA 0.45 OKFHMN_19260 yggR Uncharacterized protein YggR low > 79
Enterobacter asburiae PDN3 0.71 EX28DRAFT_1357 RNA helicase HrpA 0.45 EX28DRAFT_2988 pilus retraction protein PilT low > 76
Escherichia coli ECRC99 0.71 KEDOAH_26710 hrpA ATP-dependent RNA helicase HrpA 0.45 KEDOAH_08880 yggR Uncharacterized protein YggR — —
Escherichia coli ECOR27 0.71 NOLOHH_19390 hrpA ATP-dependent RNA helicase HrpA 0.45 NOLOHH_11130 yggR Uncharacterized protein YggR low > 76
Escherichia coli BL21 0.71 ECD_01368 putative ATP-dependent helicase 0.45 ECD_02780 putative PilT family AAA+ ATPase low > 61
Escherichia coli ECRC62 0.71 BNILDI_17845 hrpA ATP-dependent RNA helicase HrpA 0.45 BNILDI_09710 yggR Uncharacterized protein YggR low > 75
Escherichia coli BW25113 0.71 b1413 hrpA ATP-dependent helicase (RefSeq) 0.45 b2950 yggR putative protein transport (VIMSS) low > 76
Escherichia coli Nissle 1917 0.71 ECOLIN_RS08180 ATP-dependent RNA helicase HrpA 0.45 ECOLIN_RS16410 type IV pilus twitching motility protein PilT — —
Escherichia fergusonii Becca 0.71 EFB2_02565 hypothetical protein 0.45 EFB2_00952 putative protein YggR low > 86
Escherichia coli ECOR38 0.71 HEPCGN_26110 hrpA ATP-dependent RNA helicase HrpA 0.45 HEPCGN_18565 yggR Uncharacterized protein YggR low > 88
Klebsiella pneumoniae MKP103 0.71 KDGMDA_20775 ATP-dependent RNA helicase HrpA 0.46 KDGMDA_04610 twitching motility protein PilT low > 95
Klebsiella michiganensis M5al 0.70 BWI76_RS13165 ATP-dependent RNA helicase HrpA 0.44 BWI76_RS24095 twitching motility protein PilT low > 92
Pantoea sp. MT58 0.70 IAI47_09520 ATP-dependent RNA helicase HrpA 0.44 IAI47_03600 type IV pilus twitching motility protein PilT low > 76
Serratia liquefaciens MT49 0.70 IAI46_13330 ATP-dependent RNA helicase HrpA 0.48 IAI46_21405 type IV pilus twitching motility protein PilT low > 86
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS06635 ATP-dependent RNA helicase HrpA 0.44 PagCFBP13505_RS16095 type IV pilus twitching motility protein PilT low > 74
Rahnella sp. WP5 0.70 EX31_RS06495 ATP-dependent RNA helicase HrpA 0.44 EX31_RS02680 type IV pilus twitching motility protein PilT low > 89
Pectobacterium carotovorum WPP14 0.69 HER17_RS09660 ATP-dependent RNA helicase HrpA 0.48 HER17_RS03815 type IV pilus twitching motility protein PilT low > 75
Dickeya dadantii 3937 0.69 DDA3937_RS12270 ATP-dependent RNA helicase HrpA 0.47 DDA3937_RS17295 type IV pilus twitching motility protein PilT low > 74
Erwinia amylovora T8 0.69 OLJFJH_13820 ATP-dependent RNA helicase HrpA 0.42 OLJFJH_08535 type IV pili twitching motility protein PilT low > 58
Dickeya dianthicola ME23 0.69 DZA65_RS12800 ATP-dependent RNA helicase HrpA 0.46 DZA65_RS18430 type IV pilus twitching motility protein PilT low > 75
Erwinia tracheiphila HP pepo 2.2 0.69 IJEDHG_23640 hrpA ATP-dependent RNA helicase HrpA 0.45 IJEDHG_03445 type IV pili twitching motility protein PilT low > 61
Erwinia tracheiphila SCR3 0.69 LU632_RS12630 hrpA ATP-dependent RNA helicase HrpA 0.20 LU632_RS25695 traJ plasmid transfer ATPase TraJ low > 74
Dickeya dianthicola 67-19 0.69 HGI48_RS12360 ATP-dependent RNA helicase HrpA 0.46 HGI48_RS17340 type IV pilus twitching motility protein PilT low > 71
Shewanella loihica PV-4 0.57 Shew_1767 ATP-dependent helicase HrpA (RefSeq) 0.74 Shew_1138 twitching motility protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.57 Shewana3_1897 ATP-dependent helicase HrpA (RefSeq) 0.74 Shewana3_1195 pilus retraction ATPase PilT (RefSeq) low > 73
Shewanella oneidensis MR-1 0.57 SO2229 hrpA ATP-dependent helicase HrpA (NCBI ptt file) 0.74 SO3351 pilT twitching motility protein PilT (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.57 Sama_1619 ATP-dependent helicase HrpA (RefSeq) 0.75 Sama_2476 twitching motility protein (RefSeq) 0.19 41
Alteromonas macleodii MIT1002 0.55 MIT1002_01685 ATP-dependent RNA helicase HrpB 0.72 MIT1002_03060 Twitching mobility protein low > 70
Pseudomonas aeruginosa PA14 0.45 IKLFDK_16885 ATP-dependent RNA helicase HrpA 0.69 IKLFDK_23445 type IV pilus twitching motility protein PilT low > 100
Pseudomonas sp. SVBP6 0.45 COO64_RS22000 hrpA ATP-dependent RNA helicase HrpA 0.54 COO64_RS13005 type IV pilus twitching motility protein PilT low > 93
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4467 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.68 PfGW456L13_1012 Twitching motility protein PilT low > 87
Pseudomonas sp. DMC3 0.45 GFF2341 hypothetical protein 0.69 GFF208 Twitching mobility protein low > 89
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_18225 ATP-dependent RNA helicase HrpA 0.68 AO353_08155 twitching motility protein PilT low > 101
Pseudomonas lactucae CFBP13502 0.45 GEMAOFIL_04265 hypothetical protein 0.65 GEMAOFIL_05481 Twitching mobility protein low > 93
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.69 Pf1N1B4_2343 Twitching motility protein PilT low > 87
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04280 ATP-dependent RNA helicase HrpA 0.69 AO356_13430 twitching motility protein PilT low > 104
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2694 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.69 Pf6N2E2_4602 Twitching motility protein PilT low > 103
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.64 PFLU_RS28365 type IV pilus twitching motility protein PilT low > 109
Pseudomonas fluorescens SBW25 0.45 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.64 PFLU_RS28365 type IV pilus twitching motility protein PilT low > 109
Pseudomonas simiae WCS417 0.44 PS417_20575 ATP-dependent helicase HrpA 0.63 PS417_26720 twitching motility protein PilT low > 88
Pseudomonas sp. RS175 0.44 PFR28_00739 hypothetical protein 0.69 PFR28_04241 Twitching mobility protein low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3831 ATP-dependent helicase HrpA 0.67 Psyr_0478 pilus retraction ATPase PilT low > 86
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3831 ATP-dependent helicase HrpA 0.67 Psyr_0478 pilus retraction ATPase PilT low > 86
Pseudomonas putida KT2440 0.44 PP_4546 ATP-dependent helicase HrpA 0.50 PP_5093 twitching motility protein low > 96
Marinobacter adhaerens HP15 0.44 HP15_1863 RNA helicase, ATP-dependent DEAH box, HrpA type 0.68 HP15_289 twitching motility protein PilT low > 73
Pseudomonas sp. BP01 0.44 JOY50_RS01295 hrpA ATP-dependent RNA helicase HrpA 0.50 JOY50_RS20915 type IV pilus twitching motility protein PilT low > 84
Pseudomonas sp. S08-1 0.43 OH686_05730 RNA helicase HrpA 0.70 OH686_10970 Twitching motility protein PilT low > 80
Pseudomonas segetis P6 0.43 MPMX49_03273 hypothetical protein 0.69 MPMX49_00612 Twitching mobility protein — —
Methylophilus sp. DMC18 0.43 GFF1094 hypothetical protein 0.68 GFF865 Twitching mobility protein low > 43
Pseudomonas stutzeri RCH2 0.43 Psest_1339 ATP-dependent helicase HrpA 0.69 Psest_0285 pilus retraction protein PilT low > 67
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS13030 ATP-dependent helicase 0.64 RR42_RS17350 twitching motility protein PilT low > 128
Ralstonia solanacearum PSI07 0.41 RPSI07_RS17865 ATP-dependent RNA helicase HrpA 0.65 RPSI07_RS11730 type IV pili twitching motility protein PilT 0.50 34
Ralstonia solanacearum GMI1000 0.41 RS_RS06270 ATP-dependent RNA helicase HrpA 0.65 RS_RS13430 type IV pili twitching motility protein PilT low > 80
Ralstonia solanacearum UW163 0.41 UW163_RS12950 ATP-dependent RNA helicase HrpA 0.66 UW163_RS08055 type IV pili twitching motility protein PilT — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS15490 ATP-dependent RNA helicase HrpA 0.66 RALBFv3_RS05570 type IV pili twitching motility protein PilT low > 76
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS11020 ATP-dependent RNA helicase HrpA 0.66 ABZR87_RS01220 type IV pilus twitching motility protein PilT low > 80
Dechlorosoma suillum PS 0.40 Dsui_1373 ATP-dependent helicase HrpA 0.68 Dsui_0604 pilus retraction protein PilT low > 51
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS17315 ATP-dependent helicase 0.47 HSERO_RS19000 twitching motility protein PilT low > 78
Variovorax sp. OAS795 0.39 ABID97_RS16615 ATP-dependent RNA helicase HrpA 0.67 ABID97_RS00255 type IV pilus twitching motility protein PilT low > 91
Variovorax sp. SCN45 0.39 GFF247 ATP-dependent helicase HrpA 0.67 GFF3743 Twitching motility protein PilT low > 127
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_1779 ATP-dependent helicase HrpA 0.70 B158DRAFT_0195 pilus retraction protein PilT low > 40
Acidovorax sp. GW101-3H11 0.38 Ac3H11_896 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.65 Ac3H11_4473 Twitching motility protein PilT low > 79
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS19720 ATP-dependent RNA helicase HrpA 0.71 ABZR86_RS10420 type IV pilus twitching motility protein PilT low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF4301 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.58 GFF2721 Twitching motility protein PilT low > 90
Rhodanobacter sp000427505 FW510-R12 0.36 LRK53_RS15885 ATP-dependent RNA helicase HrpA 0.69 LRK53_RS05685 type IV pilus twitching motility protein PilT low > 59
Acinetobacter radioresistens SK82 0.36 MPMX26_02008 hypothetical protein 0.72 MPMX26_02405 Twitching mobility protein low > 36
Lysobacter sp. OAE881 0.36 ABIE51_RS05155 ATP-dependent RNA helicase HrpA 0.69 ABIE51_RS16055 type IV pilus twitching motility protein PilT low > 62
Acinetobacter baumannii LAC-4 0.35 RR41_RS10175 ATP-dependent RNA helicase HrpA 0.73 RR41_RS14800 type IV pilus twitching motility protein PilT — —
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS12715 ATP-dependent RNA helicase HrpA 0.69 LRK54_RS04255 type IV pilus twitching motility protein PilT low > 59
Rhodanobacter denitrificans MT42 0.34 LRK55_RS12420 ATP-dependent RNA helicase HrpA 0.69 LRK55_RS04025 type IV pilus twitching motility protein PilT low > 63
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_02155 hrpA ATP-dependent RNA helicase HrpA 0.70 OKGIIK_11130 pilT twitching motility protein PilT low > 53

Not shown: 4 genomes with orthologs for CSW01_06950 only; 7 genomes with orthologs for CSW01_02460 only