Conservation of cofitness between CSW01_07150 and CSW01_00560 in Vibrio cholerae E7946 ATCC 55056

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07150 spermidine/putrescine ABC transporter permease PotC 1.0 CSW01_00560 DNA polymerase I 0.68 14
Enterobacter asburiae PDN3 0.79 EX28DRAFT_1806 ABC-type spermidine/putrescine transport system, permease component II 0.64 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Escherichia fergusonii Becca 0.76 EFB2_02851 Inner membrane ABC transporter permease protein YdcV 0.64 EFB2_04753 DNA polymerase I — —
Escherichia coli ECOR38 0.76 HEPCGN_24065 potC spermidine/putrescine ABC transporter permease PotC 0.64 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli ECRC98 0.76 JDDGAC_07090 potC spermidine/putrescine ABC transporter permease PotC 0.64 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC101 0.76 MCAODC_22790 potC spermidine/putrescine ABC transporter permease PotC 0.64 MCAODC_04650 polA DNA polymerase I low > 88
Escherichia coli ECOR27 0.76 NOLOHH_20945 potC spermidine/putrescine ABC transporter permease PotC 0.64 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli BL21 0.76 ECD_01122 spermidine/putrescine ABC transporter permease 0.64 ECD_03749 5 — —
Escherichia coli ECRC102 0.76 NIAGMN_24400 potC spermidine/putrescine ABC transporter permease PotC 0.64 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli BW25113 0.76 b1124 potC spermidine/putrescine ABC transporter membrane protein (NCBI) 0.64 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli Nissle 1917 0.76 ECOLIN_RS06475 spermidine/putrescine ABC transporter permease PotC 0.64 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli ECRC99 0.76 KEDOAH_24325 potC spermidine/putrescine ABC transporter permease PotC 0.64 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC62 0.76 BNILDI_19110 potC spermidine/putrescine ABC transporter permease PotC 0.64 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli ECRC100 0.76 OKFHMN_03430 potC spermidine/putrescine ABC transporter permease PotC 0.64 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_02544 Inner membrane ABC transporter permease protein YdcV 0.64 OHPLBJKB_04189 DNA polymerase I — —
Enterobacter sp. TBS_079 0.75 MPMX20_01805 Inner membrane ABC transporter permease protein YdcV 0.64 MPMX20_04601 DNA polymerase I low > 85
Klebsiella pneumoniae MKP103 0.75 KDGMDA_18850 spermidine/putrescine ABC transporter permease PotC 0.63 KDGMDA_08970 DNA polymerase I — —
Klebsiella michiganensis M5al 0.74 BWI76_RS11245 spermidine/putrescine ABC transporter permease PotC 0.63 BWI76_RS00355 DNA polymerase I low > 92
Pectobacterium carotovorum WPP14 0.73 HER17_RS11670 spermidine/putrescine ABC transporter permease PotC 0.65 HER17_RS21470 DNA polymerase I — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF3405 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) 0.63 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Marinobacter adhaerens HP15 0.56 HP15_4064 spermidine/putrescine ABC transporter membrane protein 0.52 HP15_293 DNA polymerase I low > 73
Sinorhizobium meliloti 1021 0.46 SMc00773 putrescine ABC transporter permease 0.29 SMc02850 DNA polymerase I low > 103
Rhizobium sp. OAE497 0.46 ABIE40_RS03280 ABC transporter permease subunit 0.38 ABIE40_RS00490 DNA polymerase I low > 107
Xanthobacter sp. DMC5 0.42 GFF47 Inner membrane ABC transporter permease protein YdcV 0.37 GFF1973 DNA polymerase I — —
Azospirillum sp. SherDot2 0.42 MPMX19_04880 Inner membrane ABC transporter permease protein YdcV 0.39 MPMX19_04869 DNA polymerase I low > 112
Magnetospirillum magneticum AMB-1 0.42 AMB_RS13195 putrescine ABC transporter permease PotI 0.39 AMB_RS21305 DNA polymerase I — —
Bosea sp. OAE506 0.41 ABIE41_RS21635 ABC transporter permease subunit 0.34 ABIE41_RS03570 DNA polymerase I low > 77
Rhodospirillum rubrum S1H 0.41 Rru_A1015 Binding-protein-dependent transport systems inner membrane component (NCBI) 0.34 Rru_A3514 DNA polymerase A (NCBI) — —
Fusobacterium nucleatum SB010 0.41 HUW76_00740 ABC transporter permease 0.26 HUW76_04385 DNA polymerase I low > 35
Azospirillum brasilense Sp245 0.40 AZOBR_RS08830 putrescine/spermidine ABC transporter permease 0.38 AZOBR_RS30685 DNA polymerase low > 97
Agrobacterium fabrum C58 0.40 Atu0612 ABC transporter, membrane spanning protein 0.38 Atu0110 DNA polymerase I — —
Phaeobacter inhibens DSM 17395 0.40 PGA1_c34450 putrescine transport system permease protein PotI 0.39 PGA1_c31780 DNA polymerase I low > 62
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.2212.1 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) 0.49 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Caulobacter crescentus NA1000 0.39 CCNA_03236 spermidine/putrescine transport system permease protein potC 0.39 CCNA_03577 DNA polymerase I low > 66
Caulobacter crescentus NA1000 Δfur 0.39 CCNA_03236 spermidine/putrescine transport system permease protein potC 0.39 CCNA_03577 DNA polymerase I low > 67
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_2828 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) 0.54 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas sp. S08-1 0.38 OH686_11310 Spermidine/putrescine import ABC transporter permease protein PotC 0.57 OH686_12215 DNA polymerase I low > 80
Pseudomonas sp. RS175 0.38 PFR28_04291 Inner membrane ABC transporter permease protein YdcV 0.54 PFR28_04624 DNA polymerase I low > 88
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS07135 ABC transporter permease subunit 0.52 QEN71_RS17885 DNA polymerase I — —
Pseudomonas aeruginosa PA14 0.37 IKLFDK_18425 spermidine/putrescine ABC transporter permease 0.58 IKLFDK_25945 DNA polymerase I low > 100
Paraburkholderia graminis OAS925 0.37 ABIE53_002367 putrescine transport system permease protein 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_05183 putrescine transport system permease protein 0.51 H281DRAFT_06022 DNA polymerase I low > 103
Shewanella loihica PV-4 0.37 Shew_0976 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.63 Shew_3714 DNA polymerase I (RefSeq) low > 60
Pseudomonas simiae WCS417 0.37 PS417_27105 spermidine/putrescine ABC transporter permease 0.56 PS417_00405 DNA polymerase I low > 88
Shewanella oneidensis MR-1 0.37 SO1273 polyamine ABC transporter, permease protein (NCBI ptt file) 0.62 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS23135 putrescine/spermidine ABC transporter permease 0.51 BPHYT_RS33610 DNA polymerase I — —
Pseudomonas fluorescens SBW25 0.37 PFLU_RS28755 ABC transporter permease subunit 0.55 PFLU_RS00395 DNA polymerase I low > 109
Pantoea sp. MT58 0.37 IAI47_13030 putrescine ABC transporter permease PotI 0.65 IAI47_00430 DNA polymerase I low > 76
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS28755 ABC transporter permease subunit 0.55 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas putida KT2440 0.37 PP_5177 spermidine/putrescine ABC transporter - permease subunit 0.58 PP_0123 DNA polymerase I, 5 low > 96
Shewanella sp. ANA-3 0.37 Shewana3_3094 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.62 Shewana3_4109 DNA polymerase I (RefSeq) — —
Pseudomonas lactucae CFBP13502 0.37 GEMAOFIL_05561 Inner membrane ABC transporter permease protein YdcV 0.55 GEMAOFIL_00284 DNA polymerase I low > 93
Pseudomonas sp. DMC3 0.36 GFF283 Inner membrane ABC transporter permease protein YdcV 0.55 GFF631 DNA polymerase I — —
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS04300 putrescine ABC transporter permease PotI 0.64 PagCFBP13505_RS18920 DNA polymerase I low > 74
Castellaniella sp019104865 MT123 0.36 ABCV34_RS02375 ABC transporter permease subunit 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Serratia liquefaciens MT49 0.36 IAI46_08385 putrescine ABC transporter permease PotI 0.66 IAI46_24985 DNA polymerase I low > 86
Pseudomonas sp. BP01 0.36 JOY50_RS22330 ABC transporter permease subunit 0.58 JOY50_RS21110 polA DNA polymerase I low > 84
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_4517 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) 0.54 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_13175 spermidine/putrescine ABC transporter permease 0.55 AO356_11465 DNA polymerase I low > 104
Pseudomonas sp. SVBP6 0.36 COO64_RS00870 ABC transporter permease subunit 0.57 COO64_RS02475 polA DNA polymerase I low > 93
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_08560 spermidine/putrescine ABC transporter permease 0.56 AO353_10930 DNA polymerase I low > 101
Pseudomonas stutzeri RCH2 0.36 Psest_4280 ABC-type spermidine/putrescine transport system, permease component II 0.58 Psest_4219 DNA polymerase I low > 67
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_2263 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) 0.55 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Erwinia amylovora T8 0.36 OLJFJH_16295 putrescine ABC transporter permease PotI 0.64 OLJFJH_05470 DNA polymerase I low > 58
Shewanella amazonensis SB2B 0.35 Sama_2639 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.63 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_4861 Binding-protein-dependent transport systems inner membrane component 0.55 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_4861 Binding-protein-dependent transport systems inner membrane component 0.55 Psyr_0270 DNA polymerase I low > 86
Rahnella sp. WP5 0.35 EX31_RS09615 putrescine ABC transporter permease PotI 0.65 EX31_RS15905 DNA polymerase I low > 89
Dickeya dianthicola ME23 0.34 DZA65_RS09805 putrescine ABC transporter permease PotI 0.62 DZA65_RS22235 DNA polymerase I — —
Dickeya dianthicola 67-19 0.34 HGI48_RS09495 putrescine ABC transporter permease PotI 0.63 HGI48_RS21260 DNA polymerase I — —
Dickeya dadantii 3937 0.34 DDA3937_RS09475 putrescine ABC transporter permease PotI 0.63 DDA3937_RS00105 DNA polymerase I — —
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS08110 ABC transporter permease 0.37 HMPREF1078_RS06335 DNA polymerase I low > 61
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS12430 ABC transporter permease 0.36 HMPREF1181_RS02070 DNA polymerase I low > 56
Bacteroides thetaiotaomicron VPI-5482 0.31 BT1289 putrescine transport system permease protein potI (NCBI ptt file) 0.36 BT3260 DNA polymerase I (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.29 BACOVA_00084 ABC transporter, permease protein 0.36 BACOVA_01357 DNA-directed DNA polymerase low > 96
Phocaeicola dorei CL03T12C01 0.29 ABI39_RS17810 ABC transporter permease 0.36 ABI39_RS05440 DNA polymerase I — —
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS03230 ABC transporter permease 0.35 HMPREF1058_RS11500 DNA polymerase I low > 67
Variovorax sp. OAS795 0.28 ABID97_RS04045 ABC transporter permease 0.47 ABID97_RS09180 DNA polymerase I low > 91
Variovorax sp. SCN45 0.28 GFF5033 ABC-type spermidine/putrescine transport system, permease component II 0.48 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF2032 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS05400 polyamine ABC transporter permease 0.53 HSERO_RS02260 DNA polymerase I low > 78
Dinoroseobacter shibae DFL-12 0.24 Dshi_1598 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.39 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Acidovorax sp. GW101-3H11 0.23 Ac3H11_4183 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Ralstonia solanacearum PSI07 0.21 RPSI07_RS16225 ABC transporter permease 0.52 RPSI07_RS13480 DNA polymerase I low > 81
Ralstonia solanacearum IBSBF1503 0.21 RALBFv3_RS01250 ABC transporter permease 0.52 RALBFv3_RS03750 DNA polymerase I — —
Ralstonia solanacearum UW163 0.21 UW163_RS14560 ABC transporter permease 0.52 UW163_RS09920 DNA polymerase I — —
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS12705 ABC transporter permease 0.52 ABZR87_RS15680 DNA polymerase I low > 80
Ralstonia solanacearum GMI1000 0.21 RS_RS08745 ABC transporter permease 0.52 RS_RS11195 DNA polymerase I low > 80

Not shown: 3 genomes with orthologs for CSW01_07150 only; 27 genomes with orthologs for CSW01_00560 only