| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Caulobacter crescentus NA1000 Δfur | 1.0 | CCNA_02616 | | 4-hydroxyphenylpyruvate dioxygenase | 1.0 | CCNA_03522 | | Zn-dependent protease TldD | 0.64 | 13 |
| Caulobacter crescentus NA1000 | 1.00 | CCNA_02616 | | 4-hydroxyphenylpyruvate dioxygenase | 1.00 | CCNA_03522 | | Zn-dependent protease TldD | low | > 66 |
| Sphingomonas koreensis DSMZ 15582 | 0.74 | Ga0059261_2984 | | 4-hydroxyphenylpyruvate dioxygenase | 0.61 | Ga0059261_2252 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 68 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.68 | A4249_RS11200 | | 4-hydroxyphenylpyruvate dioxygenase | 0.77 | A4249_RS10860 | | metalloprotease TldD | low | > 48 |
| Herbaspirillum seropedicae SmR1 | 0.58 | HSERO_RS08335 | | 4-hydroxyphenylpyruvate dioxygenase | 0.51 | HSERO_RS07155 | | peptidase C69 | low | > 78 |
| Pseudomonas sp. S08-1 | 0.55 | OH686_21080 | | 4-hydroxyphenylpyruvate dioxygenase | 0.49 | OH686_08580 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 80 |
| Kangiella aquimarina DSM 16071 | 0.54 | B158DRAFT_1446 | | 4-hydroxyphenylpyruvate dioxygenase | 0.47 | B158DRAFT_2072 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | low | > 40 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_3514 | | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | 0.50 | Psest_3320 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 67 |
| Azospirillum sp. SherDot2 | 0.53 | MPMX19_05634 | | 4-hydroxyphenylpyruvate dioxygenase | 0.61 | MPMX19_00882 | | Metalloprotease TldD | low | > 112 |
| Lysobacter sp. OAE881 | 0.52 | ABIE51_RS04075 | | 4-hydroxyphenylpyruvate dioxygenase | 0.54 | ABIE51_RS06795 | | metalloprotease TldD | low | > 62 |
| Variovorax sp. OAS795 | 0.52 | ABID97_RS25360 | | 4-hydroxyphenylpyruvate dioxygenase | 0.52 | ABID97_RS06335 | | metalloprotease TldD | low | > 91 |
| Dyella japonica UNC79MFTsu3.2 | 0.51 | ABZR86_RS18470 | | 4-hydroxyphenylpyruvate dioxygenase | 0.55 | ABZR86_RS21715 | | metalloprotease TldD | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_06775 | | 4-hydroxyphenylpyruvate dioxygenase | 0.46 | CSW01_02220 | | metalloprotease TldD | low | > 62 |
| Ralstonia sp. UNC404CL21Col | 0.51 | ABZR87_RS03395 | | 4-hydroxyphenylpyruvate dioxygenase | 0.52 | ABZR87_RS01105 | | metalloprotease TldD | low | > 80 |
| Rhodopseudomonas palustris CGA009 | 0.51 | TX73_000025 | | 4-hydroxyphenylpyruvate dioxygenase | 0.61 | TX73_004255 | | metalloprotease TldD | 0.33 | 71 |
| Paraburkholderia sabiae LMG 24235 | 0.50 | QEN71_RS28440 | | 4-hydroxyphenylpyruvate dioxygenase | 0.50 | QEN71_RS26555 | | metalloprotease TldD | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.50 | H281DRAFT_05849 | | 4-hydroxyphenylpyruvate dioxygenase | 0.49 | H281DRAFT_04688 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS18295 | | 4-hydroxyphenylpyruvate dioxygenase | 0.50 | BPHYT_RS03540 | | peptidase C69 | low | > 109 |
| Ralstonia solanacearum IBSBF1503 | 0.50 | RALBFv3_RS07685 | | 4-hydroxyphenylpyruvate dioxygenase | 0.53 | RALBFv3_RS05455 | | metalloprotease TldD | low | > 76 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.50 | GFF1741 | | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) | 0.52 | GFF580 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 90 |
| Ralstonia solanacearum UW163 | 0.50 | UW163_RS05940 | | 4-hydroxyphenylpyruvate dioxygenase | 0.53 | UW163_RS08170 | | metalloprotease TldD | — | — |
| Paraburkholderia graminis OAS925 | 0.50 | ABIE53_000012 | | 4-hydroxyphenylpyruvate dioxygenase | 0.49 | ABIE53_000851 | | TldD protein | low | > 113 |
| Variovorax sp. SCN45 | 0.50 | GFF1962 | | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) | 0.52 | GFF4449 | | TldD protein, part of TldE/TldD proteolytic complex | 0.68 | 119 |
| Ralstonia solanacearum PSI07 | 0.50 | RPSI07_RS09575 | | 4-hydroxyphenylpyruvate dioxygenase | 0.53 | RPSI07_RS11850 | | metalloprotease TldD | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.49 | RS_RS15585 | | 4-hydroxyphenylpyruvate dioxygenase | 0.53 | RS_RS13315 | | metalloprotease TldD | low | > 80 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.49 | Xcc-8004.578.1 | | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) | 0.51 | Xcc-8004.1883.1 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.49 | OKGIIK_00780 | hppD | 4-hydroxyphenylpyruvate dioxygenase | 0.53 | OKGIIK_10280 | tldD | metalloprotease TldD | low | > 52 |
| Acidovorax sp. GW101-3H11 | 0.48 | Ac3H11_1849 | | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | 0.52 | Ac3H11_4036 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 79 |
| Alteromonas macleodii MIT1002 | 0.48 | MIT1002_01553 | | 4-hydroxyphenylpyruvate dioxygenase | 0.52 | MIT1002_00227 | | protease TldD | low | > 70 |
| Pseudomonas putida KT2440 | 0.48 | PP_3433 | | 4-hydroxyphenylpyruvate dioxygenase | 0.52 | PP_0940 | | putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD | low | > 96 |
| Castellaniella sp019104865 MT123 | 0.48 | ABCV34_RS09775 | | 4-hydroxyphenylpyruvate dioxygenase | 0.50 | ABCV34_RS02590 | | metalloprotease TldD | low | > 48 |
| Pseudomonas fluorescens SBW25-INTG | 0.48 | PFLU_RS14610 | | 4-hydroxyphenylpyruvate dioxygenase | 0.51 | PFLU_RS04340 | | metalloprotease TldD | low | > 109 |
| Pseudomonas simiae WCS417 | 0.48 | PS417_14005 | | 4-hydroxyphenylpyruvate dioxygenase | 0.51 | PS417_04285 | | protease TldD | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.48 | PFLU_RS14610 | | 4-hydroxyphenylpyruvate dioxygenase | 0.51 | PFLU_RS04340 | | metalloprotease TldD | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_2935 | | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | 0.51 | PfGW456L13_5026 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_5003 | | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) | 0.51 | Pf1N1B4_1092 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.47 | Pf6N2E2_456 | | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | 0.50 | Pf6N2E2_3280 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 103 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_3330 | | 4-hydroxyphenylpyruvate dioxygenase | 0.52 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_3330 | | 4-hydroxyphenylpyruvate dioxygenase | 0.52 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_22845 | | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | 0.50 | AO356_07095 | | protease TldD | 0.21 | 45 |
| Rhodanobacter denitrificans FW104-10B01 | 0.47 | LRK54_RS05850 | | 4-hydroxyphenylpyruvate dioxygenase | 0.52 | LRK54_RS03395 | | metalloprotease TldD | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.47 | LRK55_RS05605 | | 4-hydroxyphenylpyruvate dioxygenase | 0.52 | LRK55_RS03145 | | metalloprotease TldD | low | > 63 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_26925 | | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | 0.51 | AO353_05215 | | protease TldD | low | > 101 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_02475 | | 4-hydroxyphenylpyruvate dioxygenase | 0.50 | PFR28_00161 | | Metalloprotease TldD | low | > 88 |
| Cupriavidus basilensis FW507-4G11 | 0.47 | RR42_RS33500 | | 4-hydroxyphenylpyruvate dioxygenase | 0.52 | RR42_RS05875 | | protease TldD | low | > 128 |
| Sinorhizobium meliloti 1021 | 0.46 | SMc03211 | | 4-hydroxyphenylpyruvate dioxygenase | 0.61 | SMc00960 | | hypothetical protein | low | > 103 |
| Dickeya dianthicola ME23 | 0.44 | DZA65_RS22650 | | 4-hydroxyphenylpyruvate dioxygenase | 0.47 | DZA65_RS01440 | | metalloprotease TldD | low | > 75 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS21665 | | 4-hydroxyphenylpyruvate dioxygenase | 0.48 | HGI48_RS01380 | | metalloprotease TldD | low | > 71 |
| Dickeya dadantii 3937 | 0.42 | DDA3937_RS21335 | | 4-hydroxyphenylpyruvate dioxygenase | 0.48 | DDA3937_RS01460 | | metalloprotease TldD | low | > 74 |
| Shewanella amazonensis SB2B | 0.42 | Sama_1568 | | 4-hydroxyphenylpyruvate dioxygenase (RefSeq) | 0.47 | Sama_0474 | | TldD protein (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.41 | Shew_2155 | | 4-hydroxyphenylpyruvate dioxygenase (RefSeq) | 0.48 | Shew_0410 | | peptidase U62, modulator of DNA gyrase (RefSeq) | low | > 60 |
| Phaeobacter inhibens DSM 17395 | 0.41 | PGA1_c07610 | | 4-hydroxyphenylpyruvate dioxygenase Hpd | 0.61 | PGA1_c06240 | | protein TldD | low | > 62 |
| Shewanella sp. ANA-3 | 0.40 | Shewana3_2482 | | 4-hydroxyphenylpyruvate dioxygenase (RefSeq) | 0.49 | Shewana3_3641 | | microcin-processing peptidase 2 (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.40 | SO1962 | | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | 0.46 | SO4091 | tldD | tldD protein (NCBI ptt file) | low | > 76 |
Not shown: 4 genomes with orthologs for CCNA_02616 only; 33 genomes with orthologs for CCNA_03522 only