| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Burkholderia phytofirmans PsJN | 1.0 | BPHYT_RS19375 | | AMP-binding protein | 1.0 | BPHYT_RS17930 | | diaminopimelate decarboxylase | 0.31 | 5 |
| Paraburkholderia graminis OAS925 | 0.93 | ABIE53_000249 | | fatty-acyl-CoA synthase | 0.93 | ABIE53_003749 | | diaminopimelate decarboxylase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.93 | H281DRAFT_02398 | | fatty-acyl-CoA synthase | 0.92 | H281DRAFT_05606 | | diaminopimelate decarboxylase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.89 | QEN71_RS29275 | | AMP-binding protein | 0.86 | QEN71_RS28080 | | diaminopimelate decarboxylase | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.76 | RR42_RS26915 | | AMP-binding protein | 0.69 | RR42_RS19050 | | diaminopimelate decarboxylase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.73 | ABZR87_RS07325 | | AMP-binding protein | 0.71 | ABZR87_RS02640 | | diaminopimelate decarboxylase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.72 | RALBFv3_RS11360 | | AMP-binding protein | 0.73 | RALBFv3_RS06990 | | diaminopimelate decarboxylase | — | — |
| Ralstonia solanacearum UW163 | 0.72 | UW163_RS02225 | | AMP-binding protein | 0.73 | UW163_RS06625 | | diaminopimelate decarboxylase | — | — |
| Ralstonia solanacearum PSI07 | 0.72 | RPSI07_RS21845 | | AMP-binding protein | 0.72 | RPSI07_RS10250 | | diaminopimelate decarboxylase | — | — |
| Ralstonia solanacearum GMI1000 | 0.72 | RS_RS02190 | | AMP-binding protein | 0.71 | RS_RS14930 | | diaminopimelate decarboxylase | — | — |
| Azospirillum sp. SherDot2 | 0.63 | MPMX19_03344 | | 3-[(3aS,4S,7aS)-7a-methyl-1, 5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase | 0.48 | MPMX19_05819 | | Diaminopimelate decarboxylase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.60 | GFF4967 | | Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | 0.57 | GFF1341 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | low | > 90 |
| Rhodanobacter denitrificans MT42 | 0.60 | LRK55_RS08165 | | AMP-binding protein | 0.39 | LRK55_RS11215 | | diaminopimelate decarboxylase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.60 | LRK54_RS08400 | | AMP-binding protein | 0.39 | LRK54_RS11485 | | diaminopimelate decarboxylase | low | > 59 |
| Dinoroseobacter shibae DFL-12 | 0.60 | Dshi_3403 | | AMP-dependent synthetase and ligase (RefSeq) | 0.44 | Dshi_3059 | | diaminopimelate decarboxylase (RefSeq) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.59 | OKGIIK_15170 | | AMP-binding protein | 0.38 | OKGIIK_12375 | lysA | diaminopimelate decarboxylase | low | > 52 |
| Variovorax sp. SCN45 | 0.58 | GFF2007 | | Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16) | 0.56 | GFF5315 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | — | — |
| Variovorax sp. OAS795 | 0.58 | ABID97_RS25135 | | AMP-binding protein | 0.56 | ABID97_RS23305 | | diaminopimelate decarboxylase | — | — |
| Marinobacter adhaerens HP15 | 0.56 | HP15_999 | | acyl-CoA synthase | 0.57 | HP15_247 | | diaminopimelate decarboxylase | — | — |
| Shewanella loihica PV-4 | 0.56 | Shew_2593 | | acyl-CoA synthetase (RefSeq) | 0.58 | Shew_0322 | | diaminopimelate decarboxylase (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.56 | Sama_1904 | | AMP-binding domain protein (RefSeq) | 0.53 | Sama_3250 | | diaminopimelate decarboxylase (RefSeq) | low | > 62 |
| Pseudomonas putida KT2440 | 0.55 | PP_3458 | | Butyrate--CoA ligase | 0.59 | PP_5227 | | diaminopimelate decarboxylase | low | > 96 |
| Shewanella sp. ANA-3 | 0.55 | Shewana3_2475 | | AMP-binding domain protein (RefSeq) | 0.58 | Shewana3_0390 | | diaminopimelate decarboxylase (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.55 | SO1971 | | AMP-binding family protein (NCBI ptt file) | 0.59 | SO4309 | lysA | diaminopimelate decarboxylase (NCBI ptt file) | low | > 76 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_1086 | | Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II | 0.57 | Psest_3764 | | diaminopimelate decarboxylase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.53 | Ga0059261_0771 | | Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II | 0.36 | Ga0059261_2051 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | low | > 68 |
| Pseudomonas fluorescens FW300-N2E2 | 0.53 | Pf6N2E2_2190 | | Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | 0.58 | Pf6N2E2_4419 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.53 | AO353_20355 | | AMP-binding protein | 0.57 | AO353_09035 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.52 | AO356_01575 | | AMP-binding protein | 0.58 | AO356_12740 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_3988 | | Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | 0.59 | Pf1N1B4_2174 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | — | — |
| Alteromonas macleodii MIT1002 | 0.52 | MIT1002_03360 | | Long-chain-fatty-acid--CoA ligase | 0.57 | MIT1002_00160 | | Diaminopimelate decarboxylase | low | > 70 |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_2593 | | Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | 0.58 | PfGW456L13_845 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | low | > 87 |
| Pseudomonas sp. RS175 | 0.52 | PFR28_01261 | | 3-[(3aS,4S,7aS)-7a-methyl-1, 5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase | 0.58 | PFR28_04375 | | Diaminopimelate decarboxylase | — | — |
| Pseudomonas fluorescens SBW25 | 0.51 | PFLU_RS18960 | | AMP-binding protein | 0.56 | PFLU_RS29265 | | diaminopimelate decarboxylase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.51 | PFLU_RS18960 | | AMP-binding protein | 0.56 | PFLU_RS29265 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas simiae WCS417 | 0.51 | PS417_17010 | | AMP-binding protein | 0.56 | PS417_27580 | | diaminopimelate decarboxylase | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.51 | CA264_07945 | | AMP-binding protein | 0.32 | CA264_02390 | | diaminopimelate decarboxylase | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.51 | MPMX26_00634 | | 3-[(3aS,4S,7aS)-7a-methyl-1, 5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase | 0.56 | MPMX26_02232 | | Diaminopimelate decarboxylase | low | > 36 |
| Mycobacterium tuberculosis H37Rv | 0.46 | Rv2505c | | Probable fatty-acid-CoA ligase FadD35 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase) | 0.21 | Rv1293 | | Diaminopimelate decarboxylase LysA (DAP decarboxylase) | — | — |
| Methanococcus maripaludis JJ | 0.45 | MMJJ_RS02080 | | AMP-binding protein | 0.36 | MMJJ_RS08170 | | diaminopimelate decarboxylase | low | > 28 |
| Methanococcus maripaludis S2 | 0.45 | MMP_RS02990 | | AMP-binding protein | 0.36 | MMP_RS06180 | | diaminopimelate decarboxylase | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.41 | DvMF_2357 | | AMP-binding domain protein (RefSeq) | 0.49 | DvMF_0353 | | diaminopimelate decarboxylase (RefSeq) | low | > 51 |
| Phocaeicola vulgatus CL09T03C04 | 0.40 | HMPREF1058_RS17680 | | AMP-binding protein | 0.33 | HMPREF1058_RS06195 | | diaminopimelate decarboxylase | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.40 | ABI39_RS13880 | | AMP-binding protein | 0.33 | ABI39_RS19950 | | diaminopimelate decarboxylase | low | > 72 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.40 | DVU3065 | | AMP-binding enzyme family protein (TIGR) | 0.47 | DVU1647 | lysA-1 | diaminopimelate decarboxylase (TIGR) | low | > 55 |
| Bacteroides stercoris CC31F | 0.40 | HMPREF1181_RS01205 | | AMP-binding protein | 0.35 | HMPREF1181_RS11050 | | diaminopimelate decarboxylase | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.39 | BACOVA_01082 | | AMP-binding domain protein | 0.34 | BACOVA_00215 | | diaminopimelate decarboxylase | low | > 94 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.39 | BT2782 | | long-chain-fatty-acid--CoA ligase (NCBI ptt file) | 0.34 | BT1374 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | low | > 81 |
| Parabacteroides merdae CL09T00C40 | 0.39 | HMPREF1078_RS17565 | | AMP-binding protein | 0.33 | HMPREF1078_RS13545 | | diaminopimelate decarboxylase | low | > 61 |
| Rhodopseudomonas palustris CGA009 | 0.26 | TX73_002405 | | AMP-binding protein | 0.44 | TX73_024635 | | diaminopimelate decarboxylase | — | — |
| Caulobacter crescentus NA1000 | 0.21 | CCNA_01382 | | long-chain-fatty-acid--CoA ligase | 0.38 | CCNA_02296 | | diaminopimelate decarboxylase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.21 | CCNA_01382 | | long-chain-fatty-acid--CoA ligase | 0.38 | CCNA_02296 | | diaminopimelate decarboxylase | — | — |
Not shown: 1 genomes with orthologs for BPHYT_RS19375 only; 21 genomes with orthologs for BPHYT_RS17930 only