Conservation of cofitness between BPHYT_RS16490 and BPHYT_RS16975 in Burkholderia phytofirmans PsJN

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16490 glycerol-3-phosphate dehydrogenase 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 0.29 18
Paraburkholderia bryophila 376MFSha3.1 0.91 H281DRAFT_04228 homodimeric glycerol 3-phosphate dehydrogenase (quinone) 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) — —
Paraburkholderia graminis OAS925 0.90 ABIE53_003468 glycerol-3-phosphate dehydrogenase 0.93 ABIE53_003560 shikimate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.79 QEN71_RS02235 glycerol-3-phosphate dehydrogenase 0.81 QEN71_RS27130 shikimate dehydrogenase — —
Variovorax sp. SCN45 0.60 GFF2677 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) 0.35 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 127
Azospirillum sp. SherDot2 0.59 MPMX19_05967 D-erythritol 1-phosphate dehydrogenase 0.19 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) — —
Variovorax sp. OAS795 0.58 ABID97_RS19955 glycerol-3-phosphate dehydrogenase 0.34 ABID97_RS06300 shikimate dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS04840 glycerol-3-phosphate dehydrogenase 0.51 HSERO_RS01990 shikimate 5-dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS03020 glycerol-3-phosphate dehydrogenase 0.54 ABZR87_RS01605 shikimate dehydrogenase low > 80
Ralstonia solanacearum PSI07 0.55 RPSI07_RS09885 glycerol-3-phosphate dehydrogenase 0.55 RPSI07_RS11300 shikimate dehydrogenase low > 81
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.471.1 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 74
Ralstonia solanacearum GMI1000 0.54 RS_RS15300 glycerol-3-phosphate dehydrogenase 0.54 RS_RS13890 shikimate dehydrogenase low > 80
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS07360 glycerol-3-phosphate dehydrogenase 0.54 RALBFv3_RS05945 shikimate dehydrogenase low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS06260 glycerol-3-phosphate dehydrogenase 0.54 UW163_RS07680 shikimate dehydrogenase — —
Azospirillum brasilense Sp245 0.53 AZOBR_RS25870 glycerol-3-phosphate dehydrogenase 0.18 AZOBR_RS01765 shikimate 5-dehydrogenase — —
Sinorhizobium meliloti 1021 0.51 SMc01620 glycerol-3-phosphate dehydrogenase 0.20 SMc02791 shikimate 5-dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_3907 homodimeric glycerol 3-phosphate dehydrogenase (quinone) 0.46 Psyr_0025 shikimate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_3907 homodimeric glycerol 3-phosphate dehydrogenase (quinone) 0.46 Psyr_0025 shikimate dehydrogenase — —
Pseudomonas sp. RS175 0.49 PFR28_03370 Aerobic glycerol-3-phosphate dehydrogenase 0.46 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas fluorescens FW300-N2E3 0.49 AO353_04190 glycerol-3-phosphate dehydrogenase 0.44 AO353_10670 shikimate dehydrogenase low > 101
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_18235 glycerol-3-phosphate dehydrogenase 0.45 AO356_11315 shikimate dehydrogenase — —
Bosea sp. OAE506 0.49 ABIE41_RS14410 glycerol-3-phosphate dehydrogenase 0.18 ABIE41_RS04650 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_769 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) 0.45 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 87
Rhodopseudomonas palustris CGA009 0.48 TX73_022860 glycerol-3-phosphate dehydrogenase 0.21 TX73_022410 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_5572 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) 0.45 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas simiae WCS417 0.48 PS417_05565 glycerol-3-phosphate dehydrogenase 0.45 PS417_00125 shikimate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_1732 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) 0.45 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens SBW25 0.48 PFLU_RS05650 glycerol-3-phosphate dehydrogenase 0.45 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS05650 glycerol-3-phosphate dehydrogenase 0.45 PFLU_RS00120 shikimate dehydrogenase — —
Marinobacter adhaerens HP15 0.48 HP15_2168 FAD dependent oxidoreductase 0.45 HP15_3750 shikimate dehydrogenase — —
Pseudomonas sp. S08-1 0.48 OH686_20360 Aerobic glycerol-3-phosphate dehydrogenase 0.47 OH686_12485 Shikimate 5-dehydrogenase I alpha — —
Rhizobium sp. OAE497 0.48 ABIE40_RS24730 glycerol-3-phosphate dehydrogenase 0.19 ABIE40_RS19250 shikimate dehydrogenase — —
Pseudomonas putida KT2440 0.48 PP_1073 glycerol-3-phosphate dehydrogenase (aerobic) 0.47 PP_0074 shikimate 5-dehydrogenase — —
Pseudomonas stutzeri RCH2 0.47 Psest_2775 Glycerol-3-phosphate dehydrogenase 0.44 Psest_0029 shikimate 5-dehydrogenase — —
Alteromonas macleodii MIT1002 0.47 MIT1002_00200 Aerobic glycerol-3-phosphate dehydrogenase 0.35 MIT1002_00029 Shikimate dehydrogenase — —
Dickeya dadantii 3937 0.45 DDA3937_RS19720 glycerol-3-phosphate dehydrogenase 0.35 DDA3937_RS19100 shikimate dehydrogenase — —
Dickeya dianthicola 67-19 0.44 HGI48_RS19815 glycerol-3-phosphate dehydrogenase 0.35 HGI48_RS19190 shikimate dehydrogenase — —
Serratia liquefaciens MT49 0.44 IAI46_23915 glycerol-3-phosphate dehydrogenase 0.37 IAI46_23240 shikimate dehydrogenase 0.48 79
Dickeya dianthicola ME23 0.44 DZA65_RS20905 glycerol-3-phosphate dehydrogenase 0.35 DZA65_RS20315 shikimate dehydrogenase — —
Pectobacterium carotovorum WPP14 0.44 HER17_RS01510 glycerol-3-phosphate dehydrogenase 0.33 HER17_RS02250 shikimate dehydrogenase — —
Pantoea sp. MT58 0.43 IAI47_01750 glycerol-3-phosphate dehydrogenase 0.40 IAI47_02315 shikimate dehydrogenase — —
Erwinia tracheiphila SCR3 0.43 LU632_RS23020 glpD glycerol-3-phosphate dehydrogenase 0.37 LU632_RS22445 aroE shikimate dehydrogenase — —
Phaeobacter inhibens DSM 17395 0.43 PGA1_c08240 aerobic glycerol-3-phosphate dehydrogenase GlpD 0.19 PGA1_c35150 shikimate dehydrogenase AroE — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_00278 Aerobic glycerol-3-phosphate dehydrogenase 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) low > 73
Escherichia coli BL21 0.43 ECD_03277 sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding low > 61
Escherichia coli BW25113 0.43 b3426 glpD sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) low > 76
Escherichia coli ECOR27 0.43 NOLOHH_08720 glpD glycerol-3-phosphate dehydrogenase 0.39 NOLOHH_09355 aroE shikimate dehydrogenase low > 75
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4120 Glycerol-3-phosphate dehydrogenase 0.37 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Escherichia coli ECRC62 0.43 BNILDI_02795 glpD glycerol-3-phosphate dehydrogenase 0.39 BNILDI_02165 aroE shikimate dehydrogenase low > 75
Escherichia coli ECRC102 0.43 NIAGMN_14695 glpD glycerol-3-phosphate dehydrogenase 0.38 NIAGMN_15325 aroE shikimate dehydrogenase — —
Escherichia coli ECOR38 0.43 HEPCGN_15745 glpD glycerol-3-phosphate dehydrogenase 0.39 HEPCGN_16385 aroE shikimate dehydrogenase low > 87
Escherichia coli ECRC98 0.43 JDDGAC_20555 glpD glycerol-3-phosphate dehydrogenase 0.38 JDDGAC_21185 aroE shikimate dehydrogenase low > 86
Escherichia coli ECRC100 0.43 OKFHMN_16925 glpD glycerol-3-phosphate dehydrogenase 0.38 OKFHMN_17565 aroE shikimate dehydrogenase low > 80
Escherichia coli ECRC99 0.43 KEDOAH_11215 glpD glycerol-3-phosphate dehydrogenase 0.38 KEDOAH_10585 aroE shikimate dehydrogenase — —
Escherichia coli ECRC101 0.43 MCAODC_07455 glpD glycerol-3-phosphate dehydrogenase 0.38 MCAODC_08085 aroE shikimate dehydrogenase low > 87
Escherichia fergusonii Becca 0.42 EFB2_00403 Aerobic glycerol-3-phosphate dehydrogenase 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) low > 86
Escherichia coli Nissle 1917 0.42 ECOLIN_RS19555 glycerol-3-phosphate dehydrogenase 0.38 ECOLIN_RS18840 shikimate dehydrogenase low > 55
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_17495 glycerol-3-phosphate dehydrogenase 0.45 CSW01_00280 shikimate dehydrogenase low > 62
Enterobacter sp. TBS_079 0.41 MPMX20_04309 Aerobic glycerol-3-phosphate dehydrogenase 0.36 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF587 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) 0.36 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 78
Klebsiella michiganensis M5al 0.41 BWI76_RS26190 glycerol-3-phosphate dehydrogenase 0.36 BWI76_RS25645 shikimate dehydrogenase low > 92
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_0811 FAD dependent oxidoreductase (RefSeq) 0.20 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) — —
Acidovorax sp. GW101-3H11 0.19 Ac3H11_797 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Desulfovibrio vulgaris Hildenborough JW710 0.18 DVU3132 glycerol-3-phosphate dehydrogenase, FAD-dependent (TIGR) 0.20 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) — —
Cupriavidus basilensis FW507-4G11 0.17 RR42_RS13815 FAD-dependent oxidoreductase 0.51 RR42_RS17645 shikimate dehydrogenase — —
Castellaniella sp019104865 MT123 0.17 ABCV34_RS05860 glycerol-3-phosphate dehydrogenase/oxidase 0.44 ABCV34_RS11630 shikimate dehydrogenase — —
Rhodospirillum rubrum S1H 0.17 Rru_A1508 FAD dependent oxidoreductase (NCBI) 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS07875 FAD-dependent oxidoreductase 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.16 CA264_11355 FAD-dependent oxidoreductase 0.14 CA264_19075 shikimate dehydrogenase — —

Not shown: 7 genomes with orthologs for BPHYT_RS16490 only; 22 genomes with orthologs for BPHYT_RS16975 only