Conservation of cofitness between BPHYT_RS13220 and BPHYT_RS08950 in Burkholderia phytofirmans PsJN

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS13220 phosphomethylpyrimidine synthase 1.0 BPHYT_RS08950 aminotransferase 0.70 9
Paraburkholderia graminis OAS925 0.99 ABIE53_002857 phosphomethylpyrimidine synthase 0.94 ABIE53_002025 alanine-synthesizing transaminase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.98 H281DRAFT_00395 hydroxymethylpyrimidine synthase 0.94 H281DRAFT_00809 alanine-synthesizing transaminase low > 103
Paraburkholderia sabiae LMG 24235 0.95 QEN71_RS05480 phosphomethylpyrimidine synthase ThiC 0.91 QEN71_RS22410 pyridoxal phosphate-dependent aminotransferase 0.62 130
Herbaspirillum seropedicae SmR1 0.85 HSERO_RS02120 phosphomethylpyrimidine synthase ThiC 0.75 HSERO_RS10455 aminotransferase low > 78
Dechlorosoma suillum PS 0.85 Dsui_0422 thiamine biosynthesis protein ThiC 0.76 Dsui_2908 aspartate/tyrosine/aromatic aminotransferase — —
Dyella japonica UNC79MFTsu3.2 0.75 ABZR86_RS17230 phosphomethylpyrimidine synthase ThiC 0.35 ABZR86_RS12435 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 74
Marinobacter adhaerens HP15 0.75 HP15_453 thiamine biosynthesis protein thiC 0.63 HP15_2095 aspartate aminotransferase 0.80 15
Pseudomonas putida KT2440 0.75 PP_4922 Phosphomethylpyrimidine synthase 0.67 PP_1872 glutamate-pyruvate aminotransferase low > 96
Pseudomonas sp. S08-1 0.74 OH686_15885 phosphomethylpyrimidine synthase 0.66 OH686_22575 Alanine transaminase low > 80
Rhodanobacter sp. FW510-T8 0.74 OKGIIK_16965 thiC phosphomethylpyrimidine synthase ThiC 0.37 OKGIIK_12720 aspB aminotransferase low > 52
Pseudomonas stutzeri RCH2 0.74 Psest_0477 thiamine biosynthesis protein ThiC 0.67 Psest_1772 Aspartate/tyrosine/aromatic aminotransferase low > 67
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.67 Pf6N2E2_2446 Aspartate aminotransferase (EC 2.6.1.1) low > 103
Xanthomonas campestris pv. campestris strain 8004 0.74 Xcc-8004.1066.1 hypothetical protein 0.36 Xcc-8004.1010.1 Aspartate aminotransferase (EC 2.6.1.1) 0.61 44
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_13010 thiamine biosynthesis protein ThiC 0.67 AO353_19150 aminotransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_08810 thiamine biosynthesis protein ThiC 0.67 AO356_03090 aminotransferase low > 104
Pseudomonas sp. RS175 0.74 PFR28_05091 Phosphomethylpyrimidine synthase 0.67 PFR28_00984 Glutamate-pyruvate aminotransferase AlaA low > 88
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.67 Pf1N1B4_261 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Pseudomonas fluorescens SBW25 0.73 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.67 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.67 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase low > 109
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_187 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.67 PfGW456L13_2252 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_0544 hydroxymethylpyrimidine synthase 0.67 Psyr_3615 Aminotransferase, class I and II low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_0544 hydroxymethylpyrimidine synthase 0.67 Psyr_3615 Aminotransferase, class I and II low > 86
Pseudomonas simiae WCS417 0.73 PS417_02355 thiamine biosynthesis protein ThiC 0.67 PS417_08560 aminotransferase low > 88
Lysobacter sp. OAE881 0.73 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC 0.39 ABIE51_RS18840 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 62
Mucilaginibacter yixingensis YX-36 DSM 26809 0.72 ABZR88_RS08840 phosphomethylpyrimidine synthase ThiC 0.16 ABZR88_RS12100 pyridoxal phosphate-dependent aminotransferase low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.72 CA264_20435 phosphomethylpyrimidine synthase ThiC 0.58 CA264_06065 aminotransferase low > 74
Acinetobacter radioresistens SK82 0.71 MPMX26_00180 Phosphomethylpyrimidine synthase 0.66 MPMX26_01871 Glutamate-pyruvate aminotransferase AlaA low > 36
Echinicola vietnamensis KMM 6221, DSM 17526 0.71 Echvi_3567 thiamine biosynthesis protein ThiC 0.17 Echvi_0032 Aspartate/tyrosine/aromatic aminotransferase low > 79
Ralstonia solanacearum PSI07 0.69 RPSI07_RS23420 phosphomethylpyrimidine synthase ThiC 0.77 RPSI07_RS17495 pyridoxal phosphate-dependent aminotransferase low > 81
Pectobacterium carotovorum WPP14 0.69 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.65 HER17_RS07115 pyridoxal phosphate-dependent aminotransferase low > 75
Shewanella loihica PV-4 0.69 Shew_2096 thiamine biosynthesis protein ThiC (RefSeq) 0.65 Shew_1914 aminotransferase AlaT (RefSeq) low > 60
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS04785 phosphomethylpyrimidine synthase ThiC 0.77 ABZR87_RS11440 pyridoxal phosphate-dependent aminotransferase 0.59 25
Cupriavidus basilensis FW507-4G11 0.68 RR42_RS01290 thiamine biosynthesis protein ThiC 0.77 RR42_RS12545 aminotransferase 0.48 52
Ralstonia solanacearum UW163 0.68 UW163_RS03640 phosphomethylpyrimidine synthase ThiC 0.78 UW163_RS13315 pyridoxal phosphate-dependent aminotransferase — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS09940 phosphomethylpyrimidine synthase ThiC 0.78 RALBFv3_RS15870 pyridoxal phosphate-dependent aminotransferase low > 76
Shewanella amazonensis SB2B 0.68 Sama_1860 thiamine biosynthesis protein ThiC (RefSeq) 0.65 Sama_1697 aminotransferase AlaT (RefSeq) 0.27 32
Rahnella sp. WP5 0.68 EX31_RS16815 phosphomethylpyrimidine synthase ThiC 0.62 EX31_RS19445 pyridoxal phosphate-dependent aminotransferase low > 89
Ralstonia solanacearum GMI1000 0.68 RS_RS00555 phosphomethylpyrimidine synthase 0.78 RS_RS06650 pyridoxal phosphate-dependent aminotransferase 0.60 13
Enterobacter sp. TBS_079 0.68 MPMX20_00217 Phosphomethylpyrimidine synthase 0.67 MPMX20_03220 Glutamate-pyruvate aminotransferase AlaA low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4198 Thiamin biosynthesis protein ThiC 0.67 GFF1894 Aspartate aminotransferase (EC 2.6.1.1) low > 78
Serratia liquefaciens MT49 0.67 IAI46_01320 phosphomethylpyrimidine synthase ThiC 0.66 IAI46_17720 pyridoxal phosphate-dependent aminotransferase low > 86
Enterobacter asburiae PDN3 0.67 EX28DRAFT_4536 phosphomethylpyrimidine synthase 0.67 EX28DRAFT_0319 Aspartate/tyrosine/aromatic aminotransferase low > 76
Escherichia coli Nissle 1917 0.67 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC 0.67 ECOLIN_RS13295 alanine transaminase AlaA low > 55
Escherichia coli ECOR27 0.67 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC 0.67 NOLOHH_14445 alaA alanine transaminase AlaA low > 75
Escherichia fergusonii Becca 0.67 EFB2_04617 Phosphomethylpyrimidine synthase 0.67 EFB2_01568 Glutamate-pyruvate aminotransferase AlaA low > 86
Escherichia coli ECRC99 0.67 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC 0.67 KEDOAH_05370 alaA alanine transaminase AlaA — —
Escherichia coli BW25113 0.67 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.67 b2290 yfbQ aspartate aminotransferase (NCBI) low > 76
Escherichia coli ECRC100 0.67 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC 0.67 OKFHMN_22825 alaA alanine transaminase AlaA low > 80
Escherichia coli ECRC101 0.67 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC 0.67 MCAODC_13865 alaA alanine transaminase AlaA low > 87
Escherichia coli ECRC98 0.67 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC 0.67 JDDGAC_26790 alaA alanine transaminase AlaA low > 86
Escherichia coli ECRC62 0.67 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC 0.67 BNILDI_13365 alaA alanine transaminase AlaA low > 75
Escherichia coli ECRC102 0.67 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC 0.67 NIAGMN_20595 alaA alanine transaminase AlaA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_04056 Phosphomethylpyrimidine synthase 0.67 OHPLBJKB_01415 Glutamate-pyruvate aminotransferase AlaA low > 73
Escherichia coli BL21 0.67 ECD_03871 phosphomethylpyrimidine synthase 0.67 ECD_02215 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase low > 61
Escherichia coli ECOR38 0.67 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC 0.67 HEPCGN_22030 alaA alanine transaminase AlaA low > 87
Klebsiella michiganensis M5al 0.67 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC 0.67 BWI76_RS20205 aminotransferase AlaT low > 92
Dickeya dadantii 3937 0.67 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC 0.66 DDA3937_RS14345 pyridoxal phosphate-dependent aminotransferase low > 74
Pantoea sp. MT58 0.67 IAI47_18085 phosphomethylpyrimidine synthase ThiC 0.66 IAI47_06350 pyridoxal phosphate-dependent aminotransferase low > 76
Variovorax sp. SCN45 0.67 GFF2000 Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17) 0.75 GFF2803 Alanine transaminase (EC 2.6.1.2) low > 127
Erwinia tracheiphila SCR3 0.67 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC 0.65 LU632_RS07955 pyridoxal phosphate-dependent aminotransferase low > 74
Shewanella oneidensis MR-1 0.67 SO2445 thiC thiamin biosynthesis protein ThiC (NCBI ptt file) 0.64 SO2483 aspartate aminotransferase, putative (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_00335 phosphomethylpyrimidine synthase 0.68 CSW01_09870 pyridoxal phosphate-dependent aminotransferase low > 62
Alteromonas macleodii MIT1002 0.66 MIT1002_00097 Phosphomethylpyrimidine synthase 0.61 MIT1002_02306 Glutamate-pyruvate aminotransferase AlaA low > 70
Shewanella sp. ANA-3 0.66 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) 0.64 Shewana3_2145 aminotransferase AlaT (RefSeq) low > 73
Dickeya dianthicola ME23 0.66 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC 0.66 DZA65_RS14995 pyridoxal phosphate-dependent aminotransferase low > 75
Dickeya dianthicola 67-19 0.66 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.66 HGI48_RS14320 pyridoxal phosphate-dependent aminotransferase low > 71
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF4626 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.75 GFF3934 Aspartate aminotransferase (EC 2.6.1.1) low > 90
Variovorax sp. OAS795 0.65 ABID97_RS25235 phosphomethylpyrimidine synthase ThiC 0.75 ABID97_RS10885 pyridoxal phosphate-dependent aminotransferase low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_2027 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.76 Ac3H11_1508 Aspartate aminotransferase (EC 2.6.1.1) low > 79
Mycobacterium tuberculosis H37Rv 0.51 Rv0423c Probable thiamine biosynthesis protein ThiC 0.60 Rv0337c Probable aspartate aminotransferase AspC (transaminase A) (ASPAT) — —

Not shown: 23 genomes with orthologs for BPHYT_RS13220 only; 2 genomes with orthologs for BPHYT_RS08950 only