Conservation of cofitness between B158DRAFT_2275 and B158DRAFT_0134 in Kangiella aquimarina DSM 16071

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Kangiella aquimarina DSM 16071 1.0 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 1.0 B158DRAFT_0134 Heme/copper-type cytochrome/quinol oxidase, subunit 3 0.47 3
Marinobacter adhaerens HP15 0.54 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.48 HP15_3774 cytochrome c oxidase subunit III low > 73
Rhodanobacter denitrificans MT42 0.44 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.40 LRK55_RS06850 cytochrome c oxidase subunit 3 0.45 49
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.46 Xcc-8004.4842.1 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) low > 74
Rhodanobacter denitrificans FW104-10B01 0.43 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.40 LRK54_RS07110 cytochrome c oxidase subunit 3 low > 59
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.40 OKGIIK_16530 cyoC cytochrome c oxidase subunit 3 low > 52
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.40 ABZR86_RS12920 cytochrome c oxidase subunit 3 low > 74
Lysobacter sp. OAE881 0.42 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 ABIE51_RS19190 cytochrome c oxidase subunit 3 low > 62
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.36 H281DRAFT_01990 cytochrome c oxidase subunit 3 low > 103
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS13170 23S rRNA methyltransferase 0.42 RR42_RS01895 MFS transporter low > 128
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS09125 23S rRNA methyltransferase 0.36 BPHYT_RS02665 MFS transporter low > 109
Castellaniella sp019104865 MT123 0.39 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.39 ABCV34_RS13255 cytochrome c oxidase subunit 3 low > 48
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS14825 23S rRNA methyltransferase 0.39 HSERO_RS20770 MFS transporter low > 78
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 QEN71_RS01520 cytochrome c oxidase subunit 3 low > 153
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.41 ABZR87_RS06820 cytochrome c oxidase subunit 3 low > 80
Ralstonia solanacearum GMI1000 0.38 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.41 RS_RS01805 cytochrome c oxidase subunit 3 low > 80
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.41 RALBFv3_RS10965 cytochrome c oxidase subunit 3 low > 76
Ralstonia solanacearum UW163 0.38 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.41 UW163_RS02615 cytochrome c oxidase subunit 3 — —
Ralstonia solanacearum PSI07 0.38 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.41 RPSI07_RS22340 cytochrome c oxidase subunit 3 low > 81
Pseudomonas fluorescens SBW25 0.37 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 PFLU_RS00305 cytochrome c oxidase subunit 3 low > 109
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 PFLU_RS00305 cytochrome c oxidase subunit 3 low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.42 GFF693 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) low > 90
Acidovorax sp. GW101-3H11 0.37 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.41 Ac3H11_3888 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) low > 79
Pseudomonas simiae WCS417 0.36 PS417_20155 23S rRNA methyltransferase 0.50 PS417_00315 MFS transporter low > 88
Pseudomonas stutzeri RCH2 0.36 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.48 Psest_4329 Heme/copper-type cytochrome/quinol oxidase, subunit 3 low > 67
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.49 Pf1N1B4_1857 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) low > 87
Pseudomonas sp. S08-1 0.34 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.46 OH686_12310 Cytochrome c oxidase polypeptide III low > 80
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_19055 23S rRNA methyltransferase 0.49 AO356_11175 MFS transporter low > 104
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.49 Pf6N2E2_4101 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) low > 103
Variovorax sp. SCN45 0.34 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.42 GFF2302 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) low > 127
Shewanella sp. ANA-3 0.34 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.52 Shewana3_3994 cytochrome c oxidase, subunit III (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_02715 23S rRNA methyltransferase 0.49 AO353_10845 MFS transporter low > 101
Shewanella oneidensis MR-1 0.33 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.52 SO4609 cytochrome c oxidase subunit III (NCBI ptt file) low > 76
Pseudomonas sp. RS175 0.33 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 PFR28_04688 Cytochrome c oxidase subunit 3 low > 88
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.48 PfGW456L13_611 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) low > 87
Pseudomonas putida KT2440 0.33 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 PP_0106 cytochrome c oxidase subunit 3 low > 96
Shewanella amazonensis SB2B 0.31 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.56 Sama_3486 cytochrome c oxidase subunit III (RefSeq) low > 62
Shewanella loihica PV-4 0.31 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.57 Shew_0122 cytochrome c oxidase, subunit III (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.25 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.59 MIT1002_04032 Cytochrome c oxidase subunit 3 low > 70
Azospirillum sp. SherDot2 0.15 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 MPMX19_00889 Cytochrome c oxidase subunit 3 low > 112
Magnetospirillum magneticum AMB-1 0.15 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.26 AMB_RS10950 cytochrome c oxidase subunit 3 low > 64
Dinoroseobacter shibae DFL-12 0.15 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.29 Dshi_1144 cytochrome c oxidase subunit III (RefSeq) — —
Azospirillum brasilense Sp245 0.14 AZOBR_RS01195 RNA methyltransferase 0.25 AZOBR_RS10570 cytochrome B562 low > 97
Sinorhizobium meliloti 1021 0.13 SMc00974 RNA methyltransferase 0.32 SMc00013 cytochrome C oxidase subunit III transmembrane protein low > 103
Phaeobacter inhibens DSM 17395 0.13 PGA1_c34810 putative RNA methyltransferase 0.29 PGA1_c06290 cytochrome c oxidase subunit 3 — —
Rhodopseudomonas palustris CGA009 0.13 TX73_004885 methyltransferase 0.31 TX73_004310 cytochrome c oxidase subunit 3 low > 86
Bosea sp. OAE506 0.13 ABIE41_RS22255 RNA methyltransferase 0.25 ABIE41_RS22970 cytochrome c oxidase subunit 3 low > 77
Agrobacterium fabrum C58 0.12 Atu0735 RNA methyltransferase 0.35 Atu0771 cytochrome c oxidase subunit III low > 89
Sphingomonas koreensis DSMZ 15582 0.12 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 0.25 Ga0059261_2002 Heme/copper-type cytochrome/quinol oxidase, subunit 3 low > 68
Rhizobium sp. OAE497 0.12 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.35 ABIE40_RS04085 cytochrome c oxidase subunit 3 low > 107
Caulobacter crescentus NA1000 0.09 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.30 CCNA_03513 cytochrome c oxidase subunit III coxC low > 66
Caulobacter crescentus NA1000 Δfur 0.09 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.30 CCNA_03513 cytochrome c oxidase subunit III coxC low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.09 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.29 A4249_RS00135 cytochrome c oxidase subunit 3 low > 48

Not shown: 43 genomes with orthologs for B158DRAFT_2275 only; 2 genomes with orthologs for B158DRAFT_0134 only