Conservation of cofitness between Atu0346 and Atu1688 in Agrobacterium fabrum C58

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0346 uridylyltransferase/uridylyl-removing enzyme UTase 1.0 Atu1688 indole-3-glycerol-phosphate synthase 0.55 4
Rhizobium sp. OAE497 0.75 ABIE40_RS01765 [protein-PII] uridylyltransferase 0.83 ABIE40_RS09550 indole-3-glycerol phosphate synthase TrpC — —
Sinorhizobium meliloti 1021 0.72 SMc01124 PII uridylyl-transferase 0.78 SMc00236 Indole-3-glycerol phosphate synthase 0.74 20
Rhodopseudomonas palustris CGA009 0.51 TX73_003060 [protein-PII] uridylyltransferase 0.67 TX73_014985 indole-3-glycerol phosphate synthase TrpC — —
Bosea sp. OAE506 0.50 ABIE41_RS00205 [protein-PII] uridylyltransferase 0.58 ABIE41_RS17425 indole-3-glycerol phosphate synthase TrpC — —
Azospirillum brasilense Sp245 0.42 AZOBR_RS02110 protein-PII uridylyltransferase 0.53 AZOBR_RS07450 indole-3-glycerol-phosphate synthase 0.35 71
Azospirillum sp. SherDot2 0.42 MPMX19_00912 Bifunctional uridylyltransferase/uridylyl-removing enzyme 0.55 MPMX19_01014 Indole-3-glycerol phosphate synthase low > 112
Rhodospirillum rubrum S1H 0.41 Rru_A3539 GlnB (protein PII) uridylyltransferase, GlnD (NCBI) 0.49 Rru_A1897 Indole-3-glycerol-phosphate synthase (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.40 AMB_RS22650 [protein-PII] uridylyltransferase 0.50 AMB_RS14415 indole-3-glycerol phosphate synthase TrpC — —
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_2737 UTP--GlnB (protein PII) uridylyltransferase, GlnD 0.51 Ga0059261_0930 indole-3-glycerol phosphate synthase (EC 4.1.1.48) low > 68
Caulobacter crescentus NA1000 0.37 CCNA_00013 protein-PII uridylyltransferase 0.54 CCNA_01976 Indole-3-glycerol phosphate synthase low > 66
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_00013 protein-PII uridylyltransferase 0.54 CCNA_01976 Indole-3-glycerol phosphate synthase — —
Dinoroseobacter shibae DFL-12 0.37 Dshi_2833 UTP-GlnB uridylyltransferase, GlnD (RefSeq) 0.53 Dshi_1800 Indole-3-glycerol-phosphate synthase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.36 PGA1_c26750 uridylyltransferase GlnD 0.56 PGA1_c16910 indole-3-glycerol phosphate synthase TrpC — —
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS13590 [protein-PII] uridylyltransferase 0.54 A4249_RS06175 indole-3-glycerol phosphate synthase TrpC — —
Pseudomonas sp. S08-1 0.25 OH686_06495 protein-P-II uridylyltransferase 0.47 OH686_15140 Indole-3-glycerol phosphate synthase low > 80
Pseudomonas putida KT2440 0.24 PP_1589 uridylyltransferase 0.45 PP_0422 Indole-3-glycerol phosphate synthase 0.36 41
Pseudomonas stutzeri RCH2 0.24 Psest_2845 [Protein-PII] uridylyltransferase 0.47 Psest_3647 Indole-3-glycerol phosphate synthase 0.36 54
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_3081 [Protein-PII] uridylyltransferase (EC 2.7.7.59) 0.47 Pf1N1B4_2549 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.77 30
Pseudomonas simiae WCS417 0.24 PS417_06200 protein-PII uridylyltransferase 0.48 PS417_25710 indole-3-glycerol-phosphate synthase low > 88
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS06265 [protein-PII] uridylyltransferase 0.48 PFLU_RS27365 indole-3-glycerol phosphate synthase TrpC low > 109
Pseudomonas fluorescens SBW25 0.23 PFLU_RS06265 [protein-PII] uridylyltransferase 0.48 PFLU_RS27365 indole-3-glycerol phosphate synthase TrpC low > 109
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_16450 protein-PII uridylyltransferase 0.47 AO353_07210 indole-3-glycerol-phosphate synthase 0.37 63
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_4711 [Protein-PII] uridylyltransferase (EC 2.7.7.59) 0.47 PfGW456L13_1222 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.52 25
Pseudomonas fluorescens FW300-N2C3 0.23 AO356_06050 protein-PII uridylyltransferase 0.46 AO356_14440 indole-3-glycerol-phosphate synthase 0.37 40
Pseudomonas fluorescens FW300-N2E2 0.23 Pf6N2E2_3072 [Protein-PII] uridylyltransferase (EC 2.7.7.59) 0.46 Pf6N2E2_4826 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) low > 103
Pseudomonas sp. RS175 0.22 PFR28_00394 Bifunctional uridylyltransferase/uridylyl-removing enzyme 0.46 PFR28_04043 Indole-3-glycerol phosphate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_1341 Protein-P-II uridylyltransferase 0.74 Psyr_0756 indole-3-glycerol phosphate synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_1341 Protein-P-II uridylyltransferase 0.74 Psyr_0756 indole-3-glycerol phosphate synthase low > 86
Burkholderia phytofirmans PsJN 0.21 BPHYT_RS12150 PII uridylyl-transferase 0.41 BPHYT_RS17405 indole-3-glycerol phosphate synthase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_00608 UTP--GlnB (protein PII) uridylyltransferase, GlnD 0.42 H281DRAFT_05712 indole-3-glycerol phosphate synthase low > 103
Paraburkholderia graminis OAS925 0.21 ABIE53_002507 [protein-PII] uridylyltransferase 0.43 ABIE53_003643 indole-3-glycerol phosphate synthase — —
Marinobacter adhaerens HP15 0.21 HP15_1163 [protein-PII] uridylyltransferase 0.50 HP15_3291 indole-3-glycerol phosphate synthase 0.55 31
Herbaspirillum seropedicae SmR1 0.21 HSERO_RS10865 PII uridylyl-transferase 0.46 HSERO_RS19450 indole-3-glycerol-phosphate synthase 0.37 38
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS11815 [protein-PII] uridylyltransferase 0.47 ABZR87_RS02160 indole-3-glycerol phosphate synthase TrpC 0.45 67
Paraburkholderia sabiae LMG 24235 0.21 QEN71_RS06410 [protein-PII] uridylyltransferase 0.44 QEN71_RS27565 indole-3-glycerol phosphate synthase TrpC low > 153
Ralstonia solanacearum PSI07 0.21 RPSI07_RS17110 [protein-PII] uridylyltransferase 0.47 RPSI07_RS10735 indole-3-glycerol phosphate synthase TrpC — —
Ralstonia solanacearum IBSBF1503 0.20 RALBFv3_RS00365 [protein-PII] uridylyltransferase 0.46 RALBFv3_RS06505 indole-3-glycerol phosphate synthase TrpC — —
Ralstonia solanacearum UW163 0.20 UW163_RS13695 [protein-PII] uridylyltransferase 0.46 UW163_RS07120 indole-3-glycerol phosphate synthase TrpC — —
Acinetobacter radioresistens SK82 0.20 MPMX26_01867 Bifunctional uridylyltransferase/uridylyl-removing enzyme 0.45 MPMX26_00983 Indole-3-glycerol phosphate synthase low > 36
Ralstonia solanacearum GMI1000 0.20 RS_RS07035 bifunctional uridylyltransferase/uridylyl-removing protein 0.47 RS_RS14450 Indole-3-glycerol phosphate synthase 1 — —
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS11885 (protein-PII) uridylyltransferase 0.49 RR42_RS18310 indole-3-glycerol-phosphate synthase low > 128
Dechlorosoma suillum PS 0.20 Dsui_2696 (protein-PII) uridylyltransferase 0.46 Dsui_0168 Indole-3-glycerol phosphate synthase — —
Variovorax sp. SCN45 0.19 GFF1322 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme 0.45 GFF5890 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) — —
Castellaniella sp019104865 MT123 0.19 ABCV34_RS04120 [protein-PII] uridylyltransferase 0.46 ABCV34_RS10310 indole-3-glycerol phosphate synthase TrpC — —
Acidovorax sp. GW101-3H11 0.19 Ac3H11_537 [Protein-PII] uridylyltransferase (EC 2.7.7.59) 0.47 Ac3H11_772 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) low > 79
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS21575 [protein-PII] uridylyltransferase 0.51 ABZR86_RS12065 indole-3-glycerol phosphate synthase TrpC 0.85 35
Variovorax sp. OAS795 0.19 ABID97_RS15665 [protein-PII] uridylyltransferase 0.47 ABID97_RS05280 indole-3-glycerol phosphate synthase TrpC low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.19 GFF4563 [Protein-PII] uridylyltransferase (EC 2.7.7.59) 0.47 GFF3111 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.44 89
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS03245 [protein-PII] uridylyltransferase 0.47 LRK54_RS11570 indole-3-glycerol phosphate synthase TrpC — —
Rhodanobacter denitrificans MT42 0.19 LRK55_RS02995 [protein-PII] uridylyltransferase 0.46 LRK55_RS11300 indole-3-glycerol phosphate synthase TrpC — —
Rhodanobacter sp. FW510-T8 0.18 OKGIIK_10125 glnD [protein-PII] uridylyltransferase 0.52 OKGIIK_12280 trpC indole-3-glycerol phosphate synthase TrpC low > 52
Xanthomonas campestris pv. campestris strain 8004 0.16 Xcc-8004.3543.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) 0.50 Xcc-8004.622.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) — —
Desulfovibrio vulgaris Hildenborough JW710 0.15 DVU1233 glnD protein-P-II uridylyltransferase, putative (TIGR) 0.19 DVU0468 trpC indole-3-glycerol phosphate synthase (TIGR) low > 55

Not shown: 33 genomes with orthologs for Atu0346 only; 14 genomes with orthologs for Atu1688 only