Conservation of cofitness between Atu0040 and Atu1588 in Agrobacterium fabrum C58

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0040 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase 1.0 Atu1588 homoserine dehydrogenase 0.72 12
Rhizobium sp. OAE497 0.92 ABIE40_RS19445 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.83 ABIE40_RS08650 homoserine dehydrogenase — —
Sinorhizobium meliloti 1021 0.91 SMc02570 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.79 SMc00293 homoserine dehydrogenase 0.87 9
Rhodopseudomonas palustris CGA009 0.67 TX73_001620 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.53 TX73_012940 homoserine dehydrogenase — —
Magnetospirillum magneticum AMB-1 0.66 AMB_RS22930 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase 0.41 AMB_RS18865 homoserine dehydrogenase — —
Bosea sp. OAE506 0.63 ABIE41_RS03950 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.60 ABIE41_RS19165 homoserine dehydrogenase — —
Azospirillum sp. SherDot2 0.63 MPMX19_02543 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 0.48 MPMX19_00805 Homoserine dehydrogenase — —
Azospirillum brasilense Sp245 0.61 AZOBR_RS01680 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.48 AZOBR_RS07835 homoserine dehydrogenase — —
Dinoroseobacter shibae DFL-12 0.59 Dshi_2578 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (RefSeq) 0.46 Dshi_2273 Homoserine dehydrogenase (RefSeq) — —
Rhodospirillum rubrum S1H 0.59 Rru_A3595 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (NCBI) 0.46 Rru_A2410 Homoserine dehydrogenase (NCBI) — —
Phaeobacter inhibens DSM 17395 0.59 PGA1_c09270 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA 0.41 PGA1_c08650 homoserine dehydrogenase Hom — —
Caulobacter crescentus NA1000 Δfur 0.57 CCNA_03852 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide isomerase 0.33 CCNA_01447 homoserine dehydrogenase — —
Caulobacter crescentus NA1000 0.57 CCNA_03852 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.33 CCNA_01447 homoserine dehydrogenase low > 66
Dechlorosoma suillum PS 0.53 Dsui_1417 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 0.38 Dsui_2907 homoserine dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS06820 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.36 RALBFv3_RS15875 homoserine dehydrogenase — —
Ralstonia solanacearum UW163 0.52 UW163_RS06795 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.36 UW163_RS13320 homoserine dehydrogenase — —
Ralstonia solanacearum PSI07 0.52 RPSI07_RS10415 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.37 RPSI07_RS17490 homoserine dehydrogenase — —
Ralstonia solanacearum GMI1000 0.52 RS_RS14765 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase 0.36 RS_RS06655 homoserine dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS02475 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.38 ABZR87_RS11445 homoserine dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_12085 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.37 AO353_04355 homoserine dehydrogenase low > 101
Pseudomonas fluorescens FW300-N1B4 0.51 Pf1N1B4_1624 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.38 Pf1N1B4_3013 Homoserine dehydrogenase (EC 1.1.1.3) — —
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS20320 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.40 HSERO_RS10460 homoserine dehydrogenase 0.59 47
Pseudomonas putida KT2440 0.51 PP_0292 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.38 PP_1470 Homoserine dehydrogenase — —
Pseudomonas sp. S08-1 0.51 OH686_14590 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.38 OH686_17760 Homoserine dehydrogenase low > 80
Pseudomonas stutzeri RCH2 0.51 Psest_0155 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.38 Psest_3126 Homoserine dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_3839 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.38 Pf6N2E2_3143 Homoserine dehydrogenase (EC 1.1.1.3) — —
Pseudomonas fluorescens SBW25 0.51 PFLU_RS01620 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.38 PFLU_RS24550 homoserine dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS01620 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.38 PFLU_RS24550 homoserine dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_09800 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.38 AO356_06375 homoserine dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_359 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.38 PfGW456L13_1723 Homoserine dehydrogenase (EC 1.1.1.3) — —
Variovorax sp. SCN45 0.50 GFF5351 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) 0.38 GFF2801 Homoserine dehydrogenase (EC 1.1.1.3) — —
Pseudomonas syringae pv. syringae B728a 0.50 Psyr_4894 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 0.37 Psyr_1290 homoserine dehydrogenase — —
Pseudomonas simiae WCS417 0.50 PS417_01575 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.38 PS417_22885 homoserine dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS18890 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 0.38 RR42_RS12540 homoserine dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.50 Psyr_4894 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 0.37 Psyr_1290 homoserine dehydrogenase — —
Acidovorax sp. GW101-3H11 0.50 Ac3H11_4732 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) 0.38 Ac3H11_1507 Homoserine dehydrogenase (EC 1.1.1.3) — —
Variovorax sp. OAS795 0.50 ABID97_RS23130 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.38 ABID97_RS10890 homoserine dehydrogenase — —
Castellaniella sp019104865 MT123 0.50 ABCV34_RS11245 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.34 ABCV34_RS02295 homoserine dehydrogenase low > 48
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS17685 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.38 BPHYT_RS08955 homoserine dehydrogenase 0.90 12
Marinobacter adhaerens HP15 0.49 HP15_3010 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 0.36 HP15_764 homoserine dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS27840 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 0.38 QEN71_RS22405 homoserine dehydrogenase 0.91 26
Paraburkholderia graminis OAS925 0.49 ABIE53_003696 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 0.38 ABIE53_002026 homoserine dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_05658 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 0.38 H281DRAFT_00810 homoserine dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF1310 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) 0.38 GFF3935 Homoserine dehydrogenase (EC 1.1.1.3) — —
Pseudomonas sp. RS175 0.49 PFR28_04932 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 0.38 PFR28_00333 Homoserine dehydrogenase — —
Acinetobacter radioresistens SK82 0.48 MPMX26_02849 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 0.33 MPMX26_00167 Homoserine dehydrogenase — —
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_1047 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.41 Ga0059261_2711 homoserine dehydrogenase (EC 1.1.1.3) (from data) 0.95 33
Desulfovibrio vulgaris Hildenborough JW710 0.45 DVU1038 hisA phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (TIGR) 0.34 DVU0890 hom homoserine dehydrogenase (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.44 DvMF_3120 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq) 0.33 DvMF_1412 homoserine dehydrogenase (EC 1.1.1.3) (from data) 0.79 37
Synechococcus elongatus PCC 7942 0.39 Synpcc7942_1829 hisA 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 0.30 Synpcc7942_2090 thrA homoserine dehydrogenase — —
Bifidobacterium breve UCC2003 0.26 BBR_RS17030 bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase PriA 0.31 BBR_RS19540 homoserine dehydrogenase low > 34
Mycobacterium tuberculosis H37Rv 0.24 Rv1603 Probable phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA 0.29 Rv1294 Probable homoserine dehydrogenase ThrA — —

Not shown: 50 genomes with orthologs for Atu0040 only; 0 genomes with orthologs for Atu1588 only