Conservation of cofitness between ABZR87_RS01605 and ABZR87_RS11440 in Ralstonia sp. UNC404CL21Col

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Ralstonia sp. UNC404CL21Col 1.0 ABZR87_RS01605 shikimate dehydrogenase 1.0 ABZR87_RS11440 pyridoxal phosphate-dependent aminotransferase 0.63 20
Ralstonia solanacearum PSI07 0.87 RPSI07_RS11300 shikimate dehydrogenase 0.96 RPSI07_RS17495 pyridoxal phosphate-dependent aminotransferase low > 81
Ralstonia solanacearum GMI1000 0.84 RS_RS13890 shikimate dehydrogenase 0.96 RS_RS06650 pyridoxal phosphate-dependent aminotransferase 0.51 23
Ralstonia solanacearum UW163 0.82 UW163_RS07680 shikimate dehydrogenase 0.96 UW163_RS13315 pyridoxal phosphate-dependent aminotransferase — —
Ralstonia solanacearum IBSBF1503 0.82 RALBFv3_RS05945 shikimate dehydrogenase 0.96 RALBFv3_RS15870 pyridoxal phosphate-dependent aminotransferase low > 76
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS27130 shikimate dehydrogenase 0.75 QEN71_RS22410 pyridoxal phosphate-dependent aminotransferase 0.68 53
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS16975 shikimate 5-dehydrogenase 0.75 BPHYT_RS08950 aminotransferase 0.74 11
Paraburkholderia graminis OAS925 0.50 ABIE53_003560 shikimate dehydrogenase 0.74 ABIE53_002025 alanine-synthesizing transaminase — —
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.74 H281DRAFT_00809 alanine-synthesizing transaminase — —
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS17645 shikimate dehydrogenase 0.84 RR42_RS12545 aminotransferase 0.43 81
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS01990 shikimate 5-dehydrogenase 0.76 HSERO_RS10455 aminotransferase 0.69 29
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.64 Pf1N1B4_261 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.64 PfGW456L13_2252 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Pseudomonas sp. RS175 0.43 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.64 PFR28_00984 Glutamate-pyruvate aminotransferase AlaA — —
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_10670 shikimate dehydrogenase 0.64 AO353_19150 aminotransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_11315 shikimate dehydrogenase 0.64 AO356_03090 aminotransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.64 Pf6N2E2_2446 Aspartate aminotransferase (EC 2.6.1.1) — —
Pseudomonas simiae WCS417 0.42 PS417_00125 shikimate dehydrogenase 0.63 PS417_08560 aminotransferase — —
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0025 shikimate dehydrogenase 0.63 Psyr_3615 Aminotransferase, class I and II 0.49 61
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0025 shikimate dehydrogenase 0.63 Psyr_3615 Aminotransferase, class I and II low > 86
Shewanella sp. ANA-3 0.41 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.62 Shewana3_2145 aminotransferase AlaT (RefSeq) low > 73
Pseudomonas sp. S08-1 0.41 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.63 OH686_22575 Alanine transaminase low > 80
Pseudomonas putida KT2440 0.41 PP_0074 shikimate 5-dehydrogenase 0.64 PP_1872 glutamate-pyruvate aminotransferase — —
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS00120 shikimate dehydrogenase 0.64 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase — —
Pseudomonas fluorescens SBW25 0.41 PFLU_RS00120 shikimate dehydrogenase 0.64 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase — —
Shewanella oneidensis MR-1 0.41 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.62 SO2483 aspartate aminotransferase, putative (NCBI ptt file) low > 76
Pseudomonas stutzeri RCH2 0.40 Psest_0029 shikimate 5-dehydrogenase 0.63 Psest_1772 Aspartate/tyrosine/aromatic aminotransferase — —
Marinobacter adhaerens HP15 0.40 HP15_3750 shikimate dehydrogenase 0.62 HP15_2095 aspartate aminotransferase — —
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_00280 shikimate dehydrogenase 0.67 CSW01_09870 pyridoxal phosphate-dependent aminotransferase low > 62
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.88 Ac3H11_1508 Aspartate aminotransferase (EC 2.6.1.1) low > 79
Shewanella amazonensis SB2B 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) 0.63 Sama_1697 aminotransferase AlaT (RefSeq) low > 62
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.66 BWI76_RS20205 aminotransferase AlaT low > 92
Escherichia fergusonii Becca 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.66 EFB2_01568 Glutamate-pyruvate aminotransferase AlaA low > 86
Rahnella sp. WP5 0.36 EX31_RS15950 shikimate dehydrogenase 0.63 EX31_RS19445 pyridoxal phosphate-dependent aminotransferase — —
Pantoea sp. MT58 0.36 IAI47_02315 shikimate dehydrogenase 0.65 IAI47_06350 pyridoxal phosphate-dependent aminotransferase — —
Escherichia coli ECRC62 0.36 BNILDI_02165 aroE shikimate dehydrogenase 0.66 BNILDI_13365 alaA alanine transaminase AlaA low > 75
Dickeya dadantii 3937 0.36 DDA3937_RS19100 shikimate dehydrogenase 0.65 DDA3937_RS14345 pyridoxal phosphate-dependent aminotransferase — —
Escherichia coli ECOR27 0.36 NOLOHH_09355 aroE shikimate dehydrogenase 0.66 NOLOHH_14445 alaA alanine transaminase AlaA low > 75
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.65 HGI48_RS14320 pyridoxal phosphate-dependent aminotransferase — —
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.65 DZA65_RS14995 pyridoxal phosphate-dependent aminotransferase — —
Escherichia coli ECRC102 0.35 NIAGMN_15325 aroE shikimate dehydrogenase 0.66 NIAGMN_20595 alaA alanine transaminase AlaA — —
Escherichia coli ECRC99 0.35 KEDOAH_10585 aroE shikimate dehydrogenase 0.66 KEDOAH_05370 alaA alanine transaminase AlaA — —
Escherichia coli ECRC101 0.35 MCAODC_08085 aroE shikimate dehydrogenase 0.66 MCAODC_13865 alaA alanine transaminase AlaA low > 87
Shewanella loihica PV-4 0.35 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.61 Shew_1914 aminotransferase AlaT (RefSeq) low > 60
Escherichia coli ECRC98 0.35 JDDGAC_21185 aroE shikimate dehydrogenase 0.66 JDDGAC_26790 alaA alanine transaminase AlaA low > 86
Serratia liquefaciens MT49 0.35 IAI46_23240 shikimate dehydrogenase 0.66 IAI46_17720 pyridoxal phosphate-dependent aminotransferase low > 86
Escherichia coli ECRC100 0.35 OKFHMN_17565 aroE shikimate dehydrogenase 0.66 OKFHMN_22825 alaA alanine transaminase AlaA low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.66 OHPLBJKB_01415 Glutamate-pyruvate aminotransferase AlaA low > 73
Escherichia coli BL21 0.35 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.66 ECD_02215 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase low > 61
Escherichia coli BW25113 0.35 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.66 b2290 yfbQ aspartate aminotransferase (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.66 GFF1894 Aspartate aminotransferase (EC 2.6.1.1) low > 78
Escherichia coli ECOR38 0.35 HEPCGN_16385 aroE shikimate dehydrogenase 0.66 HEPCGN_22030 alaA alanine transaminase AlaA low > 87
Variovorax sp. SCN45 0.34 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.83 GFF2803 Alanine transaminase (EC 2.6.1.2) low > 127
Erwinia tracheiphila SCR3 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.65 LU632_RS07955 pyridoxal phosphate-dependent aminotransferase 0.58 23
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.64 HER17_RS07115 pyridoxal phosphate-dependent aminotransferase low > 75
Variovorax sp. OAS795 0.32 ABID97_RS06300 shikimate dehydrogenase 0.84 ABID97_RS10885 pyridoxal phosphate-dependent aminotransferase — —
Acinetobacter radioresistens SK82 0.31 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.65 MPMX26_01871 Glutamate-pyruvate aminotransferase AlaA low > 36
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.37 Xcc-8004.1010.1 Aspartate aminotransferase (EC 2.6.1.1) 0.90 7
Lysobacter sp. OAE881 0.28 ABIE51_RS01815 shikimate dehydrogenase 0.42 ABIE51_RS18840 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 62
Alteromonas macleodii MIT1002 0.28 MIT1002_00029 Shikimate dehydrogenase 0.62 MIT1002_02306 Glutamate-pyruvate aminotransferase AlaA — —
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS14985 shikimate dehydrogenase 0.38 ABZR86_RS12435 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 74
Methanococcus maripaludis JJ 0.20 MMJJ_RS00280 shikimate dehydrogenase 0.15 MMJJ_RS07170 pyridoxal phosphate-dependent aminotransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_1145 Shikimate 5-dehydrogenase 0.17 Echvi_0032 Aspartate/tyrosine/aromatic aminotransferase — —
Fusobacterium nucleatum SB010 0.13 HUW76_10445 shikimate dehydrogenase 0.18 HUW76_05840 pyridoxal phosphate-dependent aminotransferase 0.79 23
Pedobacter sp. GW460-11-11-14-LB5 0.12 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.16 CA265_RS11675 aspartate aminotransferase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS20055 shikimate dehydrogenase 0.16 ABZR88_RS12100 pyridoxal phosphate-dependent aminotransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_19075 shikimate dehydrogenase 0.58 CA264_06065 aminotransferase — —
Mycobacterium tuberculosis H37Rv 0.11 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.58 Rv0337c Probable aspartate aminotransferase AspC (transaminase A) (ASPAT) — —
Bifidobacterium breve UCC2003 0.10 BBR_RS15520 shikimate 5-dehydrogenase 0.58 BBR_RS15560 aminotransferase class V-fold PLP-dependent enzyme low > 34

Not shown: 23 genomes with orthologs for ABZR87_RS01605 only; 8 genomes with orthologs for ABZR87_RS11440 only