Conservation of cofitness between ABZR87_RS13545 and ABZR87_RS06610 in Ralstonia sp. UNC404CL21Col

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Ralstonia sp. UNC404CL21Col 1.0 ABZR87_RS13545 amino acid permease 1.0 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein 0.45 12
Ralstonia solanacearum PSI07 0.91 RPSI07_RS15760 amino acid permease 0.85 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase low > 81
Ralstonia solanacearum IBSBF1503 0.90 RALBFv3_RS01725 amino acid permease 0.85 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase low > 76
Ralstonia solanacearum UW163 0.90 UW163_RS15035 amino acid permease 0.85 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia solanacearum GMI1000 0.88 RS_RS08000 amino acid permease 0.83 RS_RS01610 D-alanyl-D-alanine carboxypeptidase low > 80
Cupriavidus basilensis FW507-4G11 0.79 RR42_RS01585 amino acid permease 0.66 RR42_RS01680 cytochrome C550 low > 128
Paraburkholderia graminis OAS925 0.73 ABIE53_000447 APA family basic amino acid/polyamine antiporter 0.59 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) low > 113
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS00500 amino acid permease 0.58 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein low > 153
Paraburkholderia bryophila 376MFSha3.1 0.71 H281DRAFT_02180 amino acid/polyamine/organocation transporter, APC superfamily 0.57 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 low > 103
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS01785 amino acid permease 0.59 BPHYT_RS02415 cytochrome C550 low > 109
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_05010 potE amino acid permease 0.37 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase — —
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS06670 amino acid permease 0.40 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Rhodanobacter denitrificans MT42 0.45 LRK55_RS01315 amino acid permease 0.38 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS01525 amino acid permease 0.38 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase low > 59
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.2936.1 Amino acid transporters 0.36 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 74
Lysobacter sp. OAE881 0.43 ABIE51_RS13265 amino acid permease 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.83 45
Rhodopseudomonas palustris CGA009 0.42 TX73_003040 amino acid permease 0.24 TX73_014370 D-alanyl-D-alanine carboxypeptidase low > 86
Sphingomonas koreensis DSMZ 15582 0.41 Ga0059261_1053 amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3) 0.26 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —
Bosea sp. OAE506 0.14 ABIE41_RS20970 APC family permease 0.25 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein — —
Pseudomonas putida KT2440 0.13 PP_0544 Ethanolamine transporter 0.39 PP_4803 D-alanyl-D-alanine carboxypeptidase low > 96
Serratia liquefaciens MT49 0.13 IAI46_17155 APC family permease 0.33 IAI46_08285 serine hydrolase low > 86
Pectobacterium carotovorum WPP14 0.12 HER17_RS12140 APC family permease 0.35 HER17_RS12545 serine hydrolase low > 75
Pseudomonas fluorescens FW300-N1B4 0.12 Pf1N1B4_5855 Putrescine importer 0.38 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas sp. RS175 0.12 PFR28_01269 Putrescine importer PuuP 0.39 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC low > 88
Pseudomonas fluorescens FW300-N2E2 0.12 Pf6N2E2_2179 Putrescine importer 0.38 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 103
Pseudomonas stutzeri RCH2 0.12 Psest_0670 ethanolamine permease 0.41 Psest_0516 D-alanyl-D-alanine carboxypeptidase low > 67
Dickeya dianthicola 67-19 0.12 HGI48_RS09825 APC family permease 0.36 HGI48_RS09435 serine hydrolase low > 71
Rahnella sp. WP5 0.12 EX31_RS20130 ethanolamine permease 0.35 EX31_RS09695 D-alanyl-D-alanine carboxypeptidase low > 89
Pseudomonas fluorescens FW300-N2C3 0.12 AO356_01520 porin 0.38 AO356_15330 D-alanyl-D-alanine carboxypeptidase low > 104
Pseudomonas fluorescens FW300-N2E3 0.12 AO353_27910 porin 0.39 AO353_06455 D-alanyl-D-alanine carboxypeptidase low > 101
Dickeya dadantii 3937 0.12 DDA3937_RS09815 APC family permease 0.35 DDA3937_RS09420 serine hydrolase low > 74
Shewanella sp. ANA-3 0.12 Shewana3_3634 amino acid permease-associated region (RefSeq) 0.36 Shewana3_0991 penicillin-binding protein 6 (RefSeq) low > 73
Dickeya dianthicola ME23 0.12 DZA65_RS10150 APC family permease 0.35 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase low > 75
Klebsiella michiganensis M5al 0.12 BWI76_RS03640 amino acid permease-associated protein 0.35 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Shewanella oneidensis MR-1 0.12 SO4081 amino acid permease (NCBI ptt file) 0.36 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Acinetobacter radioresistens SK82 0.11 MPMX26_01769 putative amino acid permease YhdG 0.35 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli BL21 0.11 ECD_01273 putrescine importer 0.35 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a low > 61
Escherichia coli BW25113 0.11 b1296 ycjJ putative amino acid/amine transport protein (VIMSS) 0.35 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.11 OHPLBJKB_02386 Putrescine importer PuuP 0.35 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC low > 73
Herbaspirillum seropedicae SmR1 0.11 HSERO_RS12590 ethanolamin permease 0.50 HSERO_RS21530 cytochrome C550 low > 78
Escherichia coli ECOR27 0.11 NOLOHH_20135 puuP putrescine/proton symporter PuuP 0.35 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 75
Escherichia coli ECRC62 0.11 BNILDI_18285 puuP putrescine/proton symporter PuuP 0.35 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.11 Psyr_2379 amino acid/polyamine/organocation transporter, APC superfamily 0.39 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas syringae pv. syringae B728a 0.11 Psyr_2379 amino acid/polyamine/organocation transporter, APC superfamily 0.39 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Escherichia coli ECRC98 0.11 JDDGAC_04995 puuP putrescine/proton symporter PuuP 0.35 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 86
Escherichia coli ECRC99 0.11 KEDOAH_26325 puuP putrescine/proton symporter PuuP 0.35 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC101 0.11 MCAODC_15820 puuP putrescine/proton symporter PuuP 0.35 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 87
Escherichia coli ECRC102 0.11 NIAGMN_26620 puuP putrescine/proton symporter PuuP 0.35 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC100 0.11 OKFHMN_02450 puuP putrescine/proton symporter PuuP 0.35 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 80
Enterobacter asburiae PDN3 0.11 EX28DRAFT_1496 Amino acid transporters 0.34 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase low > 76
Pantoea sp. MT58 0.11 IAI47_07130 APC family permease 0.36 IAI47_13090 serine hydrolase low > 76
Escherichia coli Nissle 1917 0.11 ECOLIN_RS11915 putrescine/proton symporter PlaP 0.35 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase — —
Enterobacter sp. TBS_079 0.11 MPMX20_02998 Low-affinity putrescine importer PlaP 0.34 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC low > 85
Escherichia fergusonii Becca 0.10 EFB2_01842 Low-affinity putrescine importer PlaP 0.35 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC low > 86
Escherichia coli ECOR38 0.10 HEPCGN_03255 plaP putrescine/proton symporter PlaP 0.35 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.10 GFF3916 Putrescine importer 0.32 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Variovorax sp. OAS795 0.10 ABID97_RS19505 ethanolamine permease 0.41 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein low > 91
Azospirillum sp. SherDot2 0.10 MPMX19_05701 Putrescine transporter PotE 0.31 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC — —
Rhodospirillum rubrum S1H 0.10 Rru_A1030 Amino acid permease-associated region (NCBI) 0.31 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) — —
Agrobacterium fabrum C58 0.09 Atu2143 ABC transporter, membrane spanning protein (amino acid) 0.21 Atu1499 penicillin binding protein low > 89
Pseudomonas sp. S08-1 0.09 OH686_03555 Lysine/cadaverine antiporter membrane protein CadB 0.39 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Sinorhizobium meliloti 1021 0.08 SMc02616 permease transmembrane protein 0.23 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein — —
Marinobacter adhaerens HP15 0.08 HP15_180 amino acid transporter 0.40 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Dinoroseobacter shibae DFL-12 0.07 Dshi_3942 amino acid permease-associated region (RefSeq) 0.24 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —

Not shown: 11 genomes with orthologs for ABZR87_RS13545 only; 18 genomes with orthologs for ABZR87_RS06610 only